Wall clock time and date at job start Wed Apr 1 2020 03:54:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09004 * 109.47278 * 2 1 4 4 N 1.46503 * 109.47045 * 119.99822 * 2 1 3 5 5 C 1.36937 * 120.00068 * 274.72553 * 4 2 1 6 6 H 1.07997 * 120.00009 * 0.02562 * 5 4 2 7 7 C 1.38814 * 120.00054 * 180.02562 * 5 4 2 8 8 N 1.31616 * 119.99866 * 180.02562 * 7 5 4 9 9 Si 1.86805 * 119.99794 * 359.97438 * 7 5 4 10 10 H 1.48499 * 109.47074 * 90.00485 * 9 7 5 11 11 H 1.48504 * 109.46907 * 210.00418 * 9 7 5 12 12 H 1.48499 * 109.47065 * 329.99988 * 9 7 5 13 13 C 1.52996 * 109.47242 * 239.99827 * 2 1 3 14 14 H 1.08997 * 110.88785 * 308.58850 * 13 2 1 15 15 C 1.55155 * 111.00617 * 184.70419 * 13 2 1 16 16 C 1.54320 * 102.94573 * 206.42431 * 15 13 2 17 17 N 1.47023 * 107.26887 * 22.19487 * 16 15 13 18 18 C 1.34773 * 125.64921 * 181.10069 * 17 16 15 19 19 O 1.21598 * 120.00533 * 185.10700 * 18 17 16 20 20 C 1.47548 * 120.00183 * 5.10643 * 18 17 16 21 21 C 1.46405 * 120.24793 * 352.01557 * 20 18 17 22 22 C 1.35597 * 119.10126 * 179.70831 * 21 20 18 23 23 C 1.41165 * 119.48507 * 0.56184 * 22 21 20 24 24 N 1.32061 * 132.79365 * 179.73228 * 23 22 21 25 25 N 1.28594 * 109.72496 * 179.97438 * 24 23 22 26 26 C 1.31101 * 110.34606 * 359.97438 * 25 24 23 27 27 O 1.35687 * 126.33431 * 180.02562 * 26 25 24 28 28 N 1.36529 * 107.33185 * 0.02562 * 26 25 24 29 29 C 1.36021 * 133.10226 * 180.02562 * 28 26 25 30 30 C 1.47467 * 108.72418 * 1.02195 * 17 16 15 31 31 H 1.09001 * 109.47123 * 175.00469 * 1 2 3 32 32 H 1.09007 * 109.47343 * 295.00046 * 1 2 3 33 33 H 1.09004 * 109.47274 * 55.00210 * 1 2 3 34 34 H 0.96999 * 119.99907 * 95.00252 * 4 2 1 35 35 H 0.97001 * 119.99475 * 179.97438 * 8 7 5 36 36 H 1.09003 * 110.71910 * 324.79260 * 15 13 2 37 37 H 1.09003 * 110.71921 * 88.05624 * 15 13 2 38 38 H 1.09000 * 109.88335 * 141.60692 * 16 15 13 39 39 H 1.08994 * 109.88368 * 262.62522 * 16 15 13 40 40 H 1.07994 * 120.44988 * 359.97438 * 21 20 18 41 41 H 1.08005 * 120.25904 * 180.26120 * 22 21 20 42 42 H 0.96700 * 114.00161 * 270.00132 * 27 26 25 43 43 H 1.08001 * 119.79764 * 359.95898 * 29 28 26 44 44 H 1.08997 * 110.40990 * 217.08433 * 30 17 16 45 45 H 1.08999 * 110.34750 * 94.74623 * 30 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 2.1544 -0.0061 2.3744 6 1 1.9014 1.0428 2.4219 7 6 2.6176 -0.6603 3.5077 8 7 2.7480 -0.0025 4.6402 9 14 3.0546 -2.4747 3.4257 10 1 4.4858 -2.6230 3.0584 11 1 2.8160 -3.1016 4.7506 12 1 2.2093 -3.1417 2.4031 13 6 2.0400 -0.7213 -1.2492 14 1 1.5707 -1.6997 -1.3518 15 6 3.5864 -0.8457 -1.2272 16 6 3.9482 -0.9253 -2.7252 17 7 2.8339 -0.3279 -3.4757 18 6 2.7562 -0.2250 -4.8172 19 8 1.8285 0.3721 -5.3285 20 6 3.7968 -0.8369 -5.6656 21 6 5.0030 -1.4038 -5.0599 22 6 5.9417 -1.9658 -5.8610 23 6 5.7430 -1.9819 -7.2585 24 7 6.4665 -2.4432 -8.2623 25 7 5.8579 -2.2226 -9.3734 26 6 4.7178 -1.6131 -9.1554 27 8 3.8191 -1.2283 -10.0964 28 7 4.6020 -1.4373 -7.8065 29 6 3.6445 -0.8743 -7.0213 30 6 1.8143 0.1386 -2.5178 31 1 -0.3633 -1.0238 -0.0895 32 1 -0.3634 0.4343 0.9314 33 1 -0.3634 0.5894 -0.8419 34 1 2.2490 -1.6317 1.1527 35 1 3.0713 -0.4598 5.4322 36 1 4.0375 0.0337 -0.7676 37 1 3.8928 -1.7536 -0.7076 38 1 4.8647 -0.3668 -2.9154 39 1 4.0806 -1.9663 -3.0198 40 1 5.1414 -1.3788 -3.9891 41 1 6.8367 -2.3934 -5.4336 42 1 3.9639 -0.3347 -10.4363 43 1 2.7585 -0.4538 -7.4736 44 1 0.8137 -0.0286 -2.9164 45 1 1.9619 1.1946 -2.2915 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001484349480.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:54:48 Heat of formation + Delta-G solvation = 86.216962 kcal Electronic energy + Delta-G solvation = -29628.428468 eV Core-core repulsion = 25457.091471 eV Total energy + Delta-G solvation = -4171.336997 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -44.08123 -40.76038 -38.63565 -38.28670 -37.75784 -35.70877 -34.32702 -32.63862 -31.83413 -30.80788 -29.98673 -29.46086 -28.11207 -25.77173 -24.47274 -24.12765 -23.07921 -22.94909 -21.60639 -20.48006 -20.01421 -19.71685 -18.96738 -17.83816 -17.67450 -17.19422 -16.86569 -16.35149 -15.92001 -15.47586 -15.44250 -15.08441 -14.45097 -14.39685 -13.98497 -13.87759 -13.41373 -13.20956 -13.10850 -12.90904 -12.86546 -12.59532 -12.48957 -12.39659 -12.25684 -11.87000 -11.70303 -11.45300 -11.10366 -11.00020 -10.93706 -10.73042 -10.58513 -10.46984 -10.34003 -10.10426 -10.04450 -9.66534 -9.03760 -9.03208 -8.66267 -7.37363 -5.84818 -3.21140 -0.13726 0.24743 1.24356 1.75304 2.35426 2.52295 2.92435 3.11196 3.28950 3.30791 3.38754 3.52552 3.74810 3.90856 4.04944 4.26537 4.40017 4.42594 4.50636 4.75759 4.75978 4.91611 4.96929 5.08594 5.19725 5.24769 5.32383 5.38559 5.42604 5.51393 5.58864 5.62630 5.67674 5.78944 5.85497 5.96049 5.96477 6.07752 6.19175 6.31882 6.38021 6.64321 6.67263 6.91219 7.09814 7.66539 7.87055 7.90655 8.33816 9.11867 9.84047 10.03264 11.33387 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.021422 B = 0.002239 C = 0.002073 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1306.762933 B =12504.796222 C =13505.852852 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.190 3.810 3 H 0.060 0.940 4 N -0.746 5.746 5 C -0.243 4.243 6 H 0.090 0.910 7 C 0.005 3.995 8 N -0.933 5.933 9 Si 0.883 3.117 10 H -0.284 1.284 11 H -0.292 1.292 12 H -0.277 1.277 13 C -0.108 4.108 14 H 0.082 0.918 15 C -0.121 4.121 16 C 0.081 3.919 17 N -0.603 5.603 18 C 0.585 3.415 19 O -0.536 6.536 20 C -0.146 4.146 21 C -0.099 4.099 22 C -0.081 4.081 23 C 0.215 3.785 24 N -0.271 5.271 25 N -0.236 5.236 26 C 0.321 3.679 27 O -0.426 6.426 28 N -0.406 5.406 29 C 0.139 3.861 30 C 0.116 3.884 31 H 0.044 0.956 32 H 0.061 0.939 33 H 0.040 0.960 34 H 0.360 0.640 35 H 0.260 0.740 36 H 0.090 0.910 37 H 0.086 0.914 38 H 0.081 0.919 39 H 0.079 0.921 40 H 0.187 0.813 41 H 0.169 0.831 42 H 0.408 0.592 43 H 0.186 0.814 44 H 0.081 0.919 45 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.981 -1.542 -23.813 24.193 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.080 3.920 3 H 0.078 0.922 4 N -0.389 5.389 5 C -0.373 4.373 6 H 0.108 0.892 7 C -0.191 4.191 8 N -0.580 5.580 9 Si 0.713 3.287 10 H -0.211 1.211 11 H -0.218 1.218 12 H -0.204 1.204 13 C -0.128 4.128 14 H 0.100 0.900 15 C -0.159 4.159 16 C -0.041 4.041 17 N -0.335 5.335 18 C 0.373 3.627 19 O -0.414 6.414 20 C -0.153 4.153 21 C -0.122 4.122 22 C -0.101 4.101 23 C -0.035 4.035 24 N -0.118 5.118 25 N -0.085 5.085 26 C 0.021 3.979 27 O -0.225 6.225 28 N -0.098 5.098 29 C 0.015 3.985 30 C -0.006 4.006 31 H 0.063 0.937 32 H 0.080 0.920 33 H 0.059 0.941 34 H 0.193 0.807 35 H 0.070 0.930 36 H 0.108 0.892 37 H 0.104 0.896 38 H 0.099 0.901 39 H 0.097 0.903 40 H 0.203 0.797 41 H 0.186 0.814 42 H 0.265 0.735 43 H 0.203 0.797 44 H 0.100 0.900 45 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 4.331 -2.231 -24.967 25.438 hybrid contribution -0.717 -0.275 0.548 0.943 sum 3.614 -2.506 -24.419 24.812 Atomic orbital electron populations 1.22468 0.98655 1.00671 1.01079 1.20099 0.92046 0.95490 0.84332 0.92247 1.42725 1.79827 1.09244 1.07069 1.19033 1.37058 0.95409 0.85753 0.89204 1.24674 1.01460 0.97379 0.95565 1.69695 1.52419 1.35553 1.00353 0.86585 0.78326 0.86847 0.76926 1.21053 1.21839 1.20356 1.22770 0.95733 0.99715 0.94582 0.89967 1.22689 0.96133 1.04715 0.92397 1.22770 0.89678 0.98164 0.93497 1.48311 1.21908 1.58951 1.04376 1.17143 0.84712 0.80113 0.80776 1.90838 1.34817 1.42905 1.72863 1.20516 0.97619 1.05075 0.92066 1.23813 0.90820 0.94099 1.03516 1.20334 1.01810 1.01653 0.86352 1.22245 0.84491 0.99863 0.96887 1.74984 1.22750 1.21255 0.92764 1.74561 1.01218 1.13730 1.19034 1.21876 0.92844 1.05356 0.77831 1.85025 1.48211 1.38426 1.50871 1.44017 1.17172 1.40185 1.08462 1.21729 0.92666 0.93781 0.90343 1.22407 0.91695 0.98891 0.87598 0.93668 0.92003 0.94056 0.80696 0.93022 0.89158 0.89551 0.90088 0.90263 0.79651 0.81366 0.73457 0.79748 0.90026 0.90437 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.59 9.34 37.16 0.35 -2.25 16 2 C 0.19 3.03 2.46 -67.93 -0.17 2.87 16 3 H 0.06 0.99 7.91 -51.93 -0.41 0.58 16 4 N -0.75 -15.29 4.46 -53.42 -0.24 -15.53 16 5 C -0.24 -6.24 10.41 -15.06 -0.16 -6.39 16 6 H 0.09 2.51 8.06 -52.49 -0.42 2.09 16 7 C 0.01 0.14 5.50 -17.43 -0.10 0.05 16 8 N -0.93 -27.89 13.97 55.49 0.78 -27.11 16 9 Si 0.88 20.53 27.73 -169.99 -4.71 15.81 16 10 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 11 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 12 H -0.28 -6.02 6.52 56.52 0.37 -5.66 16 13 C -0.11 -1.30 2.61 -88.47 -0.23 -1.54 16 14 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 15 C -0.12 -1.29 5.94 -24.90 -0.15 -1.44 16 16 C 0.08 0.63 4.85 -3.07 -0.01 0.61 16 17 N -0.60 -6.05 3.33 -172.17 -0.57 -6.62 16 18 C 0.58 6.35 7.80 -12.47 -0.10 6.25 16 19 O -0.54 -7.42 16.62 5.28 0.09 -7.33 16 20 C -0.15 -1.25 5.98 -103.45 -0.62 -1.87 16 21 C -0.10 -0.65 8.68 -37.24 -0.32 -0.97 16 22 C -0.08 -0.56 10.09 -39.42 -0.40 -0.96 16 23 C 0.21 2.16 7.91 -155.70 -1.23 0.93 16 24 N -0.27 -3.33 12.28 31.26 0.38 -2.94 16 25 N -0.24 -2.91 12.19 29.73 0.36 -2.55 16 26 C 0.32 3.19 9.38 -88.50 -0.83 2.36 16 27 O -0.43 -2.98 13.65 -18.76 -0.26 -3.24 16 28 N -0.41 -3.85 2.95 -63.68 -0.19 -4.04 16 29 C 0.14 1.18 10.54 -16.33 -0.17 1.01 16 30 C 0.12 1.29 5.91 -2.50 -0.01 1.27 16 31 H 0.04 0.68 8.14 -51.93 -0.42 0.25 16 32 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 33 H 0.04 0.53 7.87 -51.93 -0.41 0.12 16 34 H 0.36 7.27 5.62 -40.82 -0.23 7.04 16 35 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 36 H 0.09 1.07 8.04 -51.93 -0.42 0.65 16 37 H 0.09 0.93 8.14 -51.93 -0.42 0.50 16 38 H 0.08 0.47 6.73 -51.93 -0.35 0.12 16 39 H 0.08 0.48 6.62 -51.93 -0.34 0.13 16 40 H 0.19 0.86 3.00 -53.09 -0.16 0.70 16 41 H 0.17 0.73 8.06 -52.48 -0.42 0.31 16 42 H 0.41 0.60 9.06 45.56 0.41 1.02 16 43 H 0.19 1.35 7.60 -52.49 -0.40 0.96 16 44 H 0.08 0.94 8.09 -51.93 -0.42 0.52 16 45 H 0.08 0.87 7.91 -51.93 -0.41 0.46 16 LS Contribution 370.77 15.07 5.59 5.59 Total: -1.00 -34.86 370.77 -7.76 -42.62 By element: Atomic # 1 Polarization: 10.25 SS G_CDS: -4.84 Total: 5.41 kcal Atomic # 6 Polarization: 4.07 SS G_CDS: -4.15 Total: -0.08 kcal Atomic # 7 Polarization: -59.31 SS G_CDS: 0.52 Total: -58.79 kcal Atomic # 8 Polarization: -10.40 SS G_CDS: -0.17 Total: -10.57 kcal Atomic # 14 Polarization: 20.53 SS G_CDS: -4.71 Total: 15.81 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -34.86 -7.76 -42.62 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001484349480.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.839 kcal (2) G-P(sol) polarization free energy of solvation -34.857 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 93.982 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.765 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.622 kcal (6) G-S(sol) free energy of system = (1) + (5) 86.217 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds