Wall clock time and date at job start Wed Apr 1 2020 03:54:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09004 * 109.47278 * 2 1 4 4 N 1.46503 * 109.47045 * 119.99822 * 2 1 3 5 5 C 1.36937 * 120.00068 * 274.72553 * 4 2 1 6 6 H 1.07997 * 120.00009 * 0.02562 * 5 4 2 7 7 C 1.38814 * 120.00054 * 180.02562 * 5 4 2 8 8 N 1.31616 * 119.99866 * 180.02562 * 7 5 4 9 9 Si 1.86805 * 119.99794 * 359.97438 * 7 5 4 10 10 H 1.48499 * 109.47074 * 90.00485 * 9 7 5 11 11 H 1.48504 * 109.46907 * 210.00418 * 9 7 5 12 12 H 1.48499 * 109.47065 * 329.99988 * 9 7 5 13 13 C 1.52996 * 109.47242 * 239.99827 * 2 1 3 14 14 H 1.08997 * 110.88785 * 308.58850 * 13 2 1 15 15 C 1.55155 * 111.00617 * 184.70419 * 13 2 1 16 16 C 1.54320 * 102.94573 * 206.42431 * 15 13 2 17 17 N 1.47023 * 107.26887 * 22.19487 * 16 15 13 18 18 C 1.34773 * 125.64921 * 181.10069 * 17 16 15 19 19 O 1.21598 * 120.00533 * 185.10700 * 18 17 16 20 20 C 1.47548 * 120.00183 * 5.10643 * 18 17 16 21 21 C 1.46405 * 120.24793 * 352.01557 * 20 18 17 22 22 C 1.35597 * 119.10126 * 179.70831 * 21 20 18 23 23 C 1.41165 * 119.48507 * 0.56184 * 22 21 20 24 24 N 1.32061 * 132.79365 * 179.73228 * 23 22 21 25 25 N 1.28594 * 109.72496 * 179.97438 * 24 23 22 26 26 C 1.31101 * 110.34606 * 359.97438 * 25 24 23 27 27 O 1.35687 * 126.33431 * 180.02562 * 26 25 24 28 28 N 1.36529 * 107.33185 * 0.02562 * 26 25 24 29 29 C 1.36021 * 133.10226 * 180.02562 * 28 26 25 30 30 C 1.47467 * 108.72418 * 1.02195 * 17 16 15 31 31 H 1.09001 * 109.47123 * 175.00469 * 1 2 3 32 32 H 1.09007 * 109.47343 * 295.00046 * 1 2 3 33 33 H 1.09004 * 109.47274 * 55.00210 * 1 2 3 34 34 H 0.96999 * 119.99907 * 95.00252 * 4 2 1 35 35 H 0.97001 * 119.99475 * 179.97438 * 8 7 5 36 36 H 1.09003 * 110.71910 * 324.79260 * 15 13 2 37 37 H 1.09003 * 110.71921 * 88.05624 * 15 13 2 38 38 H 1.09000 * 109.88335 * 141.60692 * 16 15 13 39 39 H 1.08994 * 109.88368 * 262.62522 * 16 15 13 40 40 H 1.07994 * 120.44988 * 359.97438 * 21 20 18 41 41 H 1.08005 * 120.25904 * 180.26120 * 22 21 20 42 42 H 0.96700 * 114.00161 * 270.00132 * 27 26 25 43 43 H 1.08001 * 119.79764 * 359.95898 * 29 28 26 44 44 H 1.08997 * 110.40990 * 217.08433 * 30 17 16 45 45 H 1.08999 * 110.34750 * 94.74623 * 30 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 2.1544 -0.0061 2.3744 6 1 1.9014 1.0428 2.4219 7 6 2.6176 -0.6603 3.5077 8 7 2.7480 -0.0025 4.6402 9 14 3.0546 -2.4747 3.4257 10 1 4.4858 -2.6230 3.0584 11 1 2.8160 -3.1016 4.7506 12 1 2.2093 -3.1417 2.4031 13 6 2.0400 -0.7213 -1.2492 14 1 1.5707 -1.6997 -1.3518 15 6 3.5864 -0.8457 -1.2272 16 6 3.9482 -0.9253 -2.7252 17 7 2.8339 -0.3279 -3.4757 18 6 2.7562 -0.2250 -4.8172 19 8 1.8285 0.3721 -5.3285 20 6 3.7968 -0.8369 -5.6656 21 6 5.0030 -1.4038 -5.0599 22 6 5.9417 -1.9658 -5.8610 23 6 5.7430 -1.9819 -7.2585 24 7 6.4665 -2.4432 -8.2623 25 7 5.8579 -2.2226 -9.3734 26 6 4.7178 -1.6131 -9.1554 27 8 3.8191 -1.2283 -10.0964 28 7 4.6020 -1.4373 -7.8065 29 6 3.6445 -0.8743 -7.0213 30 6 1.8143 0.1386 -2.5178 31 1 -0.3633 -1.0238 -0.0895 32 1 -0.3634 0.4343 0.9314 33 1 -0.3634 0.5894 -0.8419 34 1 2.2490 -1.6317 1.1527 35 1 3.0713 -0.4598 5.4322 36 1 4.0375 0.0337 -0.7676 37 1 3.8928 -1.7536 -0.7076 38 1 4.8647 -0.3668 -2.9154 39 1 4.0806 -1.9663 -3.0198 40 1 5.1414 -1.3788 -3.9891 41 1 6.8367 -2.3934 -5.4336 42 1 3.9639 -0.3347 -10.4363 43 1 2.7585 -0.4538 -7.4736 44 1 0.8137 -0.0286 -2.9164 45 1 1.9619 1.1946 -2.2915 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001484349480.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:54:47 Heat of formation + Delta-G solvation = 59.638517 kcal Electronic energy + Delta-G solvation = -29629.580996 eV Core-core repulsion = 25457.091471 eV Total energy + Delta-G solvation = -4172.489525 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -44.78503 -41.56772 -39.48144 -38.92431 -38.55371 -37.02174 -35.06690 -34.19472 -32.78649 -31.89123 -31.20147 -30.21786 -29.18927 -26.67645 -25.58016 -25.10612 -24.03233 -23.73198 -22.76132 -21.27749 -21.17504 -20.41878 -19.74000 -19.41391 -18.49695 -17.90903 -17.63039 -17.29598 -16.70203 -16.62209 -16.07866 -16.02748 -15.73823 -15.26037 -15.07037 -14.96380 -14.68507 -14.20097 -14.05998 -13.80031 -13.74967 -13.61371 -13.52569 -13.42480 -13.35712 -13.08091 -12.80891 -12.45383 -12.32629 -12.22813 -11.96970 -11.86660 -11.70676 -11.65820 -11.54181 -11.32181 -11.27641 -10.90755 -10.82335 -9.82191 -9.31648 -9.24635 -7.94143 -5.26847 -0.78956 -0.34789 0.57658 1.04446 1.43893 1.48382 1.55656 1.62341 1.75375 2.24695 2.49708 2.56186 2.91621 3.06614 3.31028 3.37828 3.39109 3.47460 3.62048 3.63204 3.84533 4.00321 4.19524 4.27538 4.32029 4.39816 4.46455 4.59658 4.61138 4.65034 4.73391 4.74443 4.84056 4.88843 5.00465 5.05301 5.09154 5.11713 5.20538 5.34497 5.36905 5.41865 5.62720 5.86519 6.21119 6.29236 6.32672 6.85738 7.13439 7.17280 7.93096 8.12867 9.27604 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.021422 B = 0.002239 C = 0.002073 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1306.762933 B =12504.796222 C =13505.852852 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.185 3.815 3 H 0.047 0.953 4 N -0.744 5.744 5 C -0.219 4.219 6 H 0.053 0.947 7 C -0.069 4.069 8 N -0.989 5.989 9 Si 0.954 3.046 10 H -0.271 1.271 11 H -0.308 1.308 12 H -0.249 1.249 13 C -0.099 4.099 14 H 0.092 0.908 15 C -0.123 4.123 16 C 0.081 3.919 17 N -0.602 5.602 18 C 0.586 3.414 19 O -0.572 6.572 20 C -0.147 4.147 21 C -0.083 4.083 22 C -0.079 4.079 23 C 0.210 3.790 24 N -0.305 5.305 25 N -0.271 5.271 26 C 0.327 3.673 27 O -0.428 6.428 28 N -0.408 5.408 29 C 0.139 3.861 30 C 0.120 3.880 31 H 0.052 0.948 32 H 0.029 0.971 33 H 0.067 0.933 34 H 0.367 0.633 35 H 0.255 0.745 36 H 0.074 0.926 37 H 0.091 0.909 38 H 0.109 0.891 39 H 0.109 0.891 40 H 0.211 0.789 41 H 0.198 0.802 42 H 0.431 0.569 43 H 0.192 0.808 44 H 0.079 0.921 45 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.641 -3.239 -25.432 26.054 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.077 3.923 3 H 0.065 0.935 4 N -0.388 5.388 5 C -0.350 4.350 6 H 0.071 0.929 7 C -0.260 4.260 8 N -0.640 5.640 9 Si 0.782 3.218 10 H -0.197 1.197 11 H -0.236 1.236 12 H -0.173 1.173 13 C -0.119 4.119 14 H 0.110 0.890 15 C -0.161 4.161 16 C -0.040 4.040 17 N -0.333 5.333 18 C 0.375 3.625 19 O -0.453 6.453 20 C -0.154 4.154 21 C -0.106 4.106 22 C -0.100 4.100 23 C -0.040 4.040 24 N -0.151 5.151 25 N -0.120 5.120 26 C 0.026 3.974 27 O -0.231 6.231 28 N -0.100 5.100 29 C 0.015 3.985 30 C -0.002 4.002 31 H 0.071 0.929 32 H 0.048 0.952 33 H 0.086 0.914 34 H 0.200 0.800 35 H 0.063 0.937 36 H 0.093 0.907 37 H 0.110 0.890 38 H 0.126 0.874 39 H 0.127 0.873 40 H 0.227 0.773 41 H 0.215 0.785 42 H 0.293 0.707 43 H 0.209 0.791 44 H 0.097 0.903 45 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 4.999 -3.926 -26.670 27.417 hybrid contribution -1.045 0.424 1.000 1.507 sum 3.954 -3.502 -25.670 26.207 Atomic orbital electron populations 1.22367 0.97979 1.01368 1.00555 1.20272 0.92376 0.95138 0.84538 0.93477 1.42665 1.79906 1.09444 1.06762 1.18957 1.34395 0.94094 0.87533 0.92877 1.25504 1.02775 1.02536 0.95182 1.69900 1.55040 1.37728 1.01323 0.85428 0.78990 0.80724 0.76705 1.19693 1.23586 1.17312 1.22551 0.97091 0.99566 0.92654 0.88988 1.22670 0.94547 1.04275 0.94566 1.22985 0.89693 1.00263 0.91060 1.48302 1.22159 1.58656 1.04161 1.17358 0.84614 0.79633 0.80908 1.90825 1.36398 1.44583 1.73500 1.20408 0.97885 1.05372 0.91771 1.23991 0.89419 0.92830 1.04371 1.20717 1.02915 1.01533 0.84823 1.22765 0.84285 0.99202 0.97789 1.74883 1.23921 1.22975 0.93344 1.74462 1.02547 1.15309 1.19686 1.21923 0.92458 1.04546 0.78480 1.84986 1.47437 1.40412 1.50257 1.44062 1.17318 1.40313 1.08354 1.21852 0.92634 0.93519 0.90507 1.22247 0.92105 0.98506 0.87388 0.92896 0.95150 0.91390 0.79982 0.93669 0.90745 0.89031 0.87362 0.87340 0.77292 0.78531 0.70696 0.79109 0.90304 0.90863 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.82 9.34 71.98 0.67 -4.15 16 2 C 0.18 5.67 2.46 44.99 0.11 5.78 16 3 H 0.05 1.57 7.91 -2.38 -0.02 1.55 16 4 N -0.74 -29.57 4.46 -322.94 -1.44 -31.01 16 5 C -0.22 -11.37 10.41 84.03 0.87 -10.49 16 6 H 0.05 3.10 8.06 -2.91 -0.02 3.08 16 7 C -0.07 -3.82 5.50 84.86 0.47 -3.35 16 8 N -0.99 -61.00 13.97 21.65 0.30 -60.69 16 9 Si 0.95 41.86 27.73 68.60 1.90 43.76 16 10 H -0.27 -11.27 7.11 99.48 0.71 -10.56 16 11 H -0.31 -14.32 7.11 99.48 0.71 -13.61 16 12 H -0.25 -9.59 6.52 99.48 0.65 -8.94 16 13 C -0.10 -2.11 2.61 -9.40 -0.02 -2.13 16 14 H 0.09 1.86 8.14 -2.39 -0.02 1.84 16 15 C -0.12 -2.17 5.94 31.78 0.19 -1.98 16 16 C 0.08 0.88 4.85 86.73 0.42 1.30 16 17 N -0.60 -10.04 3.33 -816.89 -2.72 -12.75 16 18 C 0.59 11.12 7.80 86.70 0.68 11.79 16 19 O -0.57 -14.89 16.62 -4.02 -0.07 -14.96 16 20 C -0.15 -2.08 5.98 -19.11 -0.11 -2.20 16 21 C -0.08 -0.73 8.68 23.79 0.21 -0.52 16 22 C -0.08 -0.82 10.09 22.38 0.23 -0.59 16 23 C 0.21 3.81 7.91 134.08 1.06 4.87 16 24 N -0.31 -7.27 12.28 -55.02 -0.68 -7.94 16 25 N -0.27 -6.59 12.19 -173.29 -2.11 -8.71 16 26 C 0.33 6.19 9.38 179.61 1.69 7.88 16 27 O -0.43 -5.44 13.65 -90.06 -1.23 -6.67 16 28 N -0.41 -7.05 2.95 -465.99 -1.38 -8.43 16 29 C 0.14 2.06 10.54 83.63 0.88 2.95 16 30 C 0.12 2.37 5.91 86.85 0.51 2.88 16 31 H 0.05 1.48 8.14 -2.39 -0.02 1.46 16 32 H 0.03 1.07 8.14 -2.38 -0.02 1.05 16 33 H 0.07 1.64 7.87 -2.38 -0.02 1.62 16 34 H 0.37 13.74 5.62 -92.71 -0.52 13.22 16 35 H 0.25 15.09 8.31 -92.71 -0.77 14.32 16 36 H 0.07 1.58 8.04 -2.39 -0.02 1.56 16 37 H 0.09 1.57 8.14 -2.39 -0.02 1.55 16 38 H 0.11 0.67 6.73 -2.39 -0.02 0.66 16 39 H 0.11 0.65 6.62 -2.39 -0.02 0.63 16 40 H 0.21 0.74 3.00 -3.48 -0.01 0.73 16 41 H 0.20 0.85 8.06 -2.91 -0.02 0.82 16 42 H 0.43 0.62 9.06 -74.06 -0.67 -0.05 16 43 H 0.19 2.50 7.60 -2.91 -0.02 2.48 16 44 H 0.08 1.63 8.09 -2.39 -0.02 1.61 16 45 H 0.07 1.52 7.91 -2.39 -0.02 1.50 16 Total: -1.00 -79.13 370.77 0.24 -78.89 By element: Atomic # 1 Polarization: 16.69 SS G_CDS: -0.18 Total: 16.50 kcal Atomic # 6 Polarization: 4.18 SS G_CDS: 7.84 Total: 12.02 kcal Atomic # 7 Polarization: -121.52 SS G_CDS: -8.02 Total: -129.54 kcal Atomic # 8 Polarization: -20.33 SS G_CDS: -1.30 Total: -21.63 kcal Atomic # 14 Polarization: 41.86 SS G_CDS: 1.90 Total: 43.76 kcal Total: -79.13 0.24 -78.89 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001484349480.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 138.525 kcal (2) G-P(sol) polarization free energy of solvation -79.130 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.395 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.243 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.886 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.639 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds