Wall clock time and date at job start Wed Apr 1 2020 03:54:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08995 * 109.47178 * 2 1 4 4 N 1.46499 * 109.47117 * 119.99934 * 2 1 3 5 5 C 1.36943 * 120.00015 * 275.27443 * 4 2 1 6 6 H 1.08000 * 119.99732 * 359.72537 * 5 4 2 7 7 C 1.38810 * 120.00306 * 179.72705 * 5 4 2 8 8 N 1.31617 * 119.99982 * 180.02562 * 7 5 4 9 9 Si 1.86797 * 119.99861 * 359.97438 * 7 5 4 10 10 H 1.48502 * 109.47307 * 90.00030 * 9 7 5 11 11 H 1.48496 * 109.47268 * 209.99884 * 9 7 5 12 12 H 1.48504 * 109.47155 * 330.00180 * 9 7 5 13 13 C 1.53002 * 109.47031 * 239.99826 * 2 1 3 14 14 H 1.09005 * 110.88310 * 299.29277 * 13 2 1 15 15 C 1.55150 * 111.00573 * 63.17641 * 13 2 1 16 16 C 1.54328 * 102.94226 * 153.57429 * 15 13 2 17 17 N 1.47015 * 107.26955 * 337.81023 * 16 15 13 18 18 C 1.34779 * 125.64861 * 178.97433 * 17 16 15 19 19 O 1.21591 * 120.00372 * 174.92378 * 18 17 16 20 20 C 1.47545 * 119.99758 * 354.92024 * 18 17 16 21 21 C 1.46400 * 120.25593 * 7.67944 * 20 18 17 22 22 C 1.35585 * 119.11081 * 179.97438 * 21 20 18 23 23 C 1.41172 * 119.48388 * 359.97438 * 22 21 20 24 24 N 1.32062 * 132.79345 * 180.02562 * 23 22 21 25 25 N 1.28589 * 109.71653 * 179.97438 * 24 23 22 26 26 C 1.31090 * 110.35527 * 0.02562 * 25 24 23 27 27 O 1.35695 * 126.33111 * 179.97438 * 26 25 24 28 28 N 1.36532 * 107.33301 * 359.97438 * 26 25 24 29 29 C 1.36022 * 133.10762 * 180.32445 * 28 26 25 30 30 C 1.47470 * 108.72666 * 358.97388 * 17 16 15 31 31 H 1.09003 * 109.46795 * 180.02562 * 1 2 3 32 32 H 1.09003 * 109.47198 * 300.00154 * 1 2 3 33 33 H 1.08997 * 109.47383 * 60.00488 * 1 2 3 34 34 H 0.97001 * 120.00416 * 95.00083 * 4 2 1 35 35 H 0.97006 * 119.99876 * 180.02562 * 8 7 5 36 36 H 1.08997 * 110.72324 * 271.93923 * 15 13 2 37 37 H 1.09001 * 110.72000 * 35.04007 * 15 13 2 38 38 H 1.09004 * 109.87988 * 97.22739 * 16 15 13 39 39 H 1.08998 * 109.88415 * 218.23594 * 16 15 13 40 40 H 1.08003 * 120.44221 * 359.95780 * 21 20 18 41 41 H 1.07995 * 120.26228 * 180.02562 * 22 21 20 42 42 H 0.96700 * 114.00253 * 270.02128 * 27 26 25 43 43 H 1.08000 * 119.79429 * 359.89816 * 29 28 26 44 44 H 1.09001 * 110.34564 * 265.25260 * 30 17 16 45 45 H 1.09003 * 110.40479 * 142.91670 * 30 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 2.1438 -0.0088 2.3772 6 1 1.8869 1.0391 2.4256 7 6 2.6011 -0.6645 3.5120 8 7 2.7212 -0.0093 4.6471 9 14 3.0447 -2.4771 3.4283 10 1 4.4789 -2.6197 3.0707 11 1 2.7990 -3.1084 4.7497 12 1 2.2089 -3.1442 2.3979 13 6 2.0400 -0.7213 -1.2492 14 1 1.6997 -1.7567 -1.2662 15 6 1.6091 0.0269 -2.5383 16 6 2.7009 -0.3748 -3.5524 17 7 3.8814 -0.7905 -2.7811 18 6 5.0434 -1.2333 -3.3009 19 8 5.9877 -1.4634 -2.5704 20 6 5.1695 -1.4389 -4.7565 21 6 4.0995 -1.0075 -5.6578 22 6 4.2399 -1.2074 -6.9915 23 6 5.4109 -1.8246 -7.4821 24 7 5.8160 -2.1410 -8.6986 25 7 6.9739 -2.6972 -8.6393 26 6 7.3803 -2.7727 -7.3952 27 8 8.5535 -3.3004 -6.9634 28 7 6.4049 -2.2221 -6.6146 29 6 6.2872 -2.0270 -5.2735 30 6 3.5841 -0.6428 -1.3442 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3634 0.5139 0.8900 33 1 -0.3634 0.5137 -0.8900 34 1 2.2490 -1.6318 1.1527 35 1 3.0411 -0.4674 5.4401 36 1 0.6288 -0.3129 -2.8722 37 1 1.6075 1.1048 -2.3763 38 1 2.3490 -1.2035 -4.1670 39 1 2.9499 0.4766 -4.1858 40 1 3.2102 -0.5366 -5.2656 41 1 3.4623 -0.8961 -7.6733 42 1 8.5090 -4.2449 -6.7608 43 1 7.0813 -2.3435 -4.6135 44 1 3.9380 0.3222 -0.9812 45 1 4.0409 -1.4534 -0.7763 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001484349481.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:54:54 Heat of formation + Delta-G solvation = 86.784060 kcal Electronic energy + Delta-G solvation = -29723.185907 eV Core-core repulsion = 25551.873501 eV Total energy + Delta-G solvation = -4171.312406 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -44.06626 -40.70956 -38.62284 -38.25910 -37.71830 -35.69164 -34.31160 -32.67675 -31.82513 -30.89432 -29.69010 -29.13397 -28.65141 -25.58823 -24.59886 -23.75013 -23.32760 -23.04044 -21.54977 -20.43983 -20.00860 -19.67316 -18.95032 -17.79532 -17.63496 -17.23481 -16.79233 -16.23150 -16.01009 -15.44513 -15.24952 -15.04069 -14.71020 -14.37393 -14.05331 -13.79117 -13.31959 -13.20929 -13.03939 -12.92722 -12.81084 -12.66528 -12.43300 -12.32922 -12.28035 -11.84858 -11.70059 -11.41390 -11.08854 -10.99689 -10.97309 -10.75448 -10.69196 -10.40232 -10.29359 -10.08122 -10.04254 -9.63557 -9.00447 -8.95767 -8.64016 -7.34724 -5.81997 -3.18431 -0.10786 0.25513 1.27215 1.77085 2.39786 2.58208 2.96918 3.13691 3.33445 3.36693 3.42786 3.53904 3.77501 3.91909 4.07345 4.27948 4.32877 4.41333 4.54601 4.65407 4.79491 4.91945 4.97187 5.06391 5.17132 5.25511 5.31349 5.38205 5.45440 5.53224 5.59753 5.62988 5.67728 5.78162 5.90337 5.94495 5.97901 6.06267 6.17554 6.26078 6.35504 6.66937 6.67236 6.89156 7.18209 7.76141 7.88128 7.92657 8.36597 9.14355 9.86978 10.05300 11.36169 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.018254 B = 0.002408 C = 0.002184 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1533.565863 B =11625.707467 C =12814.815732 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.190 3.810 3 H 0.059 0.941 4 N -0.749 5.749 5 C -0.244 4.244 6 H 0.091 0.909 7 C 0.007 3.993 8 N -0.932 5.932 9 Si 0.881 3.119 10 H -0.283 1.283 11 H -0.291 1.291 12 H -0.278 1.278 13 C -0.107 4.107 14 H 0.082 0.918 15 C -0.126 4.126 16 C 0.084 3.916 17 N -0.606 5.606 18 C 0.582 3.418 19 O -0.529 6.529 20 C -0.145 4.145 21 C -0.099 4.099 22 C -0.082 4.082 23 C 0.214 3.786 24 N -0.271 5.271 25 N -0.237 5.237 26 C 0.322 3.678 27 O -0.426 6.426 28 N -0.406 5.406 29 C 0.139 3.861 30 C 0.118 3.882 31 H 0.045 0.955 32 H 0.059 0.941 33 H 0.041 0.959 34 H 0.360 0.640 35 H 0.260 0.740 36 H 0.086 0.914 37 H 0.084 0.916 38 H 0.079 0.921 39 H 0.080 0.920 40 H 0.186 0.814 41 H 0.168 0.832 42 H 0.408 0.592 43 H 0.186 0.814 44 H 0.081 0.919 45 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.452 -3.720 -24.889 25.169 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.080 3.920 3 H 0.077 0.923 4 N -0.392 5.392 5 C -0.374 4.374 6 H 0.108 0.892 7 C -0.189 4.189 8 N -0.580 5.580 9 Si 0.712 3.288 10 H -0.210 1.210 11 H -0.218 1.218 12 H -0.204 1.204 13 C -0.127 4.127 14 H 0.100 0.900 15 C -0.164 4.164 16 C -0.038 4.038 17 N -0.339 5.339 18 C 0.369 3.631 19 O -0.407 6.407 20 C -0.152 4.152 21 C -0.122 4.122 22 C -0.102 4.102 23 C -0.036 4.036 24 N -0.118 5.118 25 N -0.086 5.086 26 C 0.022 3.978 27 O -0.225 6.225 28 N -0.098 5.098 29 C 0.015 3.985 30 C -0.003 4.003 31 H 0.064 0.936 32 H 0.078 0.922 33 H 0.060 0.940 34 H 0.193 0.807 35 H 0.070 0.930 36 H 0.105 0.895 37 H 0.103 0.897 38 H 0.097 0.903 39 H 0.098 0.902 40 H 0.203 0.797 41 H 0.186 0.814 42 H 0.266 0.734 43 H 0.203 0.797 44 H 0.099 0.901 45 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 1.555 -3.425 -26.001 26.271 hybrid contribution 0.388 -1.805 1.637 2.468 sum 1.944 -5.231 -24.364 24.995 Atomic orbital electron populations 1.22420 0.98492 1.00957 1.00639 1.20129 0.92153 0.95477 0.84235 0.92282 1.42797 1.79868 1.09424 1.07076 1.19019 1.37336 0.95486 0.85513 0.89168 1.24660 1.01334 0.97385 0.95554 1.69694 1.52530 1.35618 1.00150 0.86605 0.78570 0.86832 0.76812 1.20975 1.21789 1.20393 1.22741 0.93633 1.00730 0.95559 0.89953 1.22752 0.97645 1.01831 0.94212 1.22666 0.86284 0.99432 0.95425 1.48352 1.12627 1.63712 1.09203 1.17158 0.82072 0.77985 0.85878 1.90873 1.37159 1.51838 1.60780 1.20546 0.95144 1.04721 0.94803 1.23775 0.99383 0.96944 0.92099 1.20304 0.94337 0.99726 0.95879 1.22239 0.91685 1.02629 0.87077 1.74971 1.04620 1.16359 1.15876 1.74550 1.05833 1.15081 1.13154 1.21884 0.86337 1.04248 0.85309 1.85030 1.21573 1.30376 1.85540 1.44023 1.16541 1.41608 1.07617 1.21760 0.99141 0.96075 0.81532 1.22407 0.95684 1.03516 0.78701 0.93607 0.92214 0.93993 0.80697 0.93024 0.89498 0.89712 0.90287 0.90186 0.79743 0.81446 0.73412 0.79702 0.90084 0.89891 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.41 9.30 37.16 0.35 -2.06 16 2 C 0.19 3.03 2.40 -67.93 -0.16 2.87 16 3 H 0.06 0.99 8.07 -51.93 -0.42 0.57 16 4 N -0.75 -15.96 4.70 -53.43 -0.25 -16.22 16 5 C -0.24 -6.45 10.41 -15.06 -0.16 -6.60 16 6 H 0.09 2.56 8.06 -52.49 -0.42 2.14 16 7 C 0.01 0.19 5.50 -17.43 -0.10 0.09 16 8 N -0.93 -28.55 13.97 55.49 0.78 -27.78 16 9 Si 0.88 21.53 27.73 -169.99 -4.71 16.81 16 10 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 11 H -0.29 -7.29 7.11 56.52 0.40 -6.88 16 12 H -0.28 -6.32 6.52 56.52 0.37 -5.95 16 13 C -0.11 -1.28 2.63 -88.47 -0.23 -1.52 16 14 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 15 C -0.13 -0.97 5.44 -24.90 -0.14 -1.11 16 16 C 0.08 0.56 4.85 -3.07 -0.01 0.55 16 17 N -0.61 -6.60 3.33 -172.25 -0.57 -7.17 16 18 C 0.58 7.04 7.80 -12.46 -0.10 6.94 16 19 O -0.53 -8.48 16.62 5.29 0.09 -8.39 16 20 C -0.15 -1.32 5.98 -103.46 -0.62 -1.94 16 21 C -0.10 -0.62 8.68 -37.25 -0.32 -0.94 16 22 C -0.08 -0.54 10.09 -39.42 -0.40 -0.93 16 23 C 0.21 2.14 7.91 -155.70 -1.23 0.91 16 24 N -0.27 -3.32 12.28 31.26 0.38 -2.93 16 25 N -0.24 -2.95 12.19 29.73 0.36 -2.59 16 26 C 0.32 3.32 9.39 -88.51 -0.83 2.49 16 27 O -0.43 -3.23 13.65 -18.79 -0.26 -3.48 16 28 N -0.41 -3.98 2.95 -63.68 -0.19 -4.17 16 29 C 0.14 1.27 10.54 -16.33 -0.17 1.10 16 30 C 0.12 1.60 6.15 -2.50 -0.02 1.59 16 31 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 32 H 0.06 1.02 8.14 -51.93 -0.42 0.59 16 33 H 0.04 0.47 7.38 -51.93 -0.38 0.09 16 34 H 0.36 7.70 5.66 -40.82 -0.23 7.47 16 35 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 36 H 0.09 0.52 8.12 -51.93 -0.42 0.10 16 37 H 0.08 0.64 8.04 -51.93 -0.42 0.22 16 38 H 0.08 0.37 6.61 -51.93 -0.34 0.03 16 39 H 0.08 0.37 6.74 -51.93 -0.35 0.02 16 40 H 0.19 0.70 2.99 -53.20 -0.16 0.54 16 41 H 0.17 0.61 8.06 -52.49 -0.42 0.18 16 42 H 0.41 0.85 9.06 45.56 0.41 1.26 16 43 H 0.19 1.56 7.60 -52.49 -0.40 1.16 16 44 H 0.08 1.20 8.03 -51.93 -0.42 0.79 16 45 H 0.08 1.33 8.09 -51.93 -0.42 0.91 16 LS Contribution 370.45 15.07 5.58 5.58 Total: -1.00 -36.40 370.45 -7.76 -44.16 By element: Atomic # 1 Polarization: 9.57 SS G_CDS: -4.83 Total: 4.75 kcal Atomic # 6 Polarization: 5.57 SS G_CDS: -4.14 Total: 1.43 kcal Atomic # 7 Polarization: -61.37 SS G_CDS: 0.51 Total: -60.86 kcal Atomic # 8 Polarization: -11.71 SS G_CDS: -0.17 Total: -11.88 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -4.71 Total: 16.81 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -36.40 -7.76 -44.16 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001484349481.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.945 kcal (2) G-P(sol) polarization free energy of solvation -36.401 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 94.544 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.760 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.161 kcal (6) G-S(sol) free energy of system = (1) + (5) 86.784 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds