Wall clock time and date at job start Wed Apr 1 2020 03:54:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08995 * 109.47178 * 2 1 4 4 N 1.46499 * 109.47117 * 119.99934 * 2 1 3 5 5 C 1.36943 * 120.00015 * 275.27443 * 4 2 1 6 6 H 1.08000 * 119.99732 * 359.72537 * 5 4 2 7 7 C 1.38810 * 120.00306 * 179.72705 * 5 4 2 8 8 N 1.31617 * 119.99982 * 180.02562 * 7 5 4 9 9 Si 1.86797 * 119.99861 * 359.97438 * 7 5 4 10 10 H 1.48502 * 109.47307 * 90.00030 * 9 7 5 11 11 H 1.48496 * 109.47268 * 209.99884 * 9 7 5 12 12 H 1.48504 * 109.47155 * 330.00180 * 9 7 5 13 13 C 1.53002 * 109.47031 * 239.99826 * 2 1 3 14 14 H 1.09005 * 110.88310 * 299.29277 * 13 2 1 15 15 C 1.55150 * 111.00573 * 63.17641 * 13 2 1 16 16 C 1.54328 * 102.94226 * 153.57429 * 15 13 2 17 17 N 1.47015 * 107.26955 * 337.81023 * 16 15 13 18 18 C 1.34779 * 125.64861 * 178.97433 * 17 16 15 19 19 O 1.21591 * 120.00372 * 174.92378 * 18 17 16 20 20 C 1.47545 * 119.99758 * 354.92024 * 18 17 16 21 21 C 1.46400 * 120.25593 * 7.67944 * 20 18 17 22 22 C 1.35585 * 119.11081 * 179.97438 * 21 20 18 23 23 C 1.41172 * 119.48388 * 359.97438 * 22 21 20 24 24 N 1.32062 * 132.79345 * 180.02562 * 23 22 21 25 25 N 1.28589 * 109.71653 * 179.97438 * 24 23 22 26 26 C 1.31090 * 110.35527 * 0.02562 * 25 24 23 27 27 O 1.35695 * 126.33111 * 179.97438 * 26 25 24 28 28 N 1.36532 * 107.33301 * 359.97438 * 26 25 24 29 29 C 1.36022 * 133.10762 * 180.32445 * 28 26 25 30 30 C 1.47470 * 108.72666 * 358.97388 * 17 16 15 31 31 H 1.09003 * 109.46795 * 180.02562 * 1 2 3 32 32 H 1.09003 * 109.47198 * 300.00154 * 1 2 3 33 33 H 1.08997 * 109.47383 * 60.00488 * 1 2 3 34 34 H 0.97001 * 120.00416 * 95.00083 * 4 2 1 35 35 H 0.97006 * 119.99876 * 180.02562 * 8 7 5 36 36 H 1.08997 * 110.72324 * 271.93923 * 15 13 2 37 37 H 1.09001 * 110.72000 * 35.04007 * 15 13 2 38 38 H 1.09004 * 109.87988 * 97.22739 * 16 15 13 39 39 H 1.08998 * 109.88415 * 218.23594 * 16 15 13 40 40 H 1.08003 * 120.44221 * 359.95780 * 21 20 18 41 41 H 1.07995 * 120.26228 * 180.02562 * 22 21 20 42 42 H 0.96700 * 114.00253 * 270.02128 * 27 26 25 43 43 H 1.08000 * 119.79429 * 359.89816 * 29 28 26 44 44 H 1.09001 * 110.34564 * 265.25260 * 30 17 16 45 45 H 1.09003 * 110.40479 * 142.91670 * 30 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 2.1438 -0.0088 2.3772 6 1 1.8869 1.0391 2.4256 7 6 2.6011 -0.6645 3.5120 8 7 2.7212 -0.0093 4.6471 9 14 3.0447 -2.4771 3.4283 10 1 4.4789 -2.6197 3.0707 11 1 2.7990 -3.1084 4.7497 12 1 2.2089 -3.1442 2.3979 13 6 2.0400 -0.7213 -1.2492 14 1 1.6997 -1.7567 -1.2662 15 6 1.6091 0.0269 -2.5383 16 6 2.7009 -0.3748 -3.5524 17 7 3.8814 -0.7905 -2.7811 18 6 5.0434 -1.2333 -3.3009 19 8 5.9877 -1.4634 -2.5704 20 6 5.1695 -1.4389 -4.7565 21 6 4.0995 -1.0075 -5.6578 22 6 4.2399 -1.2074 -6.9915 23 6 5.4109 -1.8246 -7.4821 24 7 5.8160 -2.1410 -8.6986 25 7 6.9739 -2.6972 -8.6393 26 6 7.3803 -2.7727 -7.3952 27 8 8.5535 -3.3004 -6.9634 28 7 6.4049 -2.2221 -6.6146 29 6 6.2872 -2.0270 -5.2735 30 6 3.5841 -0.6428 -1.3442 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3634 0.5139 0.8900 33 1 -0.3634 0.5137 -0.8900 34 1 2.2490 -1.6318 1.1527 35 1 3.0411 -0.4674 5.4401 36 1 0.6288 -0.3129 -2.8722 37 1 1.6075 1.1048 -2.3763 38 1 2.3490 -1.2035 -4.1670 39 1 2.9499 0.4766 -4.1858 40 1 3.2102 -0.5366 -5.2656 41 1 3.4623 -0.8961 -7.6733 42 1 8.5090 -4.2449 -6.7608 43 1 7.0813 -2.3435 -4.6135 44 1 3.9380 0.3222 -0.9812 45 1 4.0409 -1.4534 -0.7763 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001484349481.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:54:51 Heat of formation + Delta-G solvation = 57.790213 kcal Electronic energy + Delta-G solvation = -29724.443174 eV Core-core repulsion = 25551.873501 eV Total energy + Delta-G solvation = -4172.569673 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 2.71 seconds Orbital eigenvalues (eV) -44.78947 -41.57166 -39.48423 -38.93956 -38.56688 -37.04266 -35.07011 -34.25296 -32.81247 -32.11649 -30.58463 -30.09956 -29.76266 -26.44350 -25.71212 -25.01326 -24.14284 -23.74093 -22.75143 -21.27751 -21.16842 -20.43070 -19.73816 -19.42453 -18.47248 -17.99460 -17.61631 -17.21868 -16.83927 -16.58909 -16.05355 -15.93259 -15.87026 -15.56208 -15.00670 -14.88524 -14.54233 -14.28095 -14.09399 -13.84249 -13.72520 -13.64932 -13.57024 -13.44003 -13.22028 -13.08624 -12.88664 -12.38953 -12.30155 -12.18700 -12.06171 -11.86624 -11.72205 -11.65754 -11.58505 -11.33750 -11.28220 -10.96626 -10.83504 -9.82554 -9.31544 -9.27421 -8.00045 -5.31205 -0.80301 -0.34101 0.57451 1.02110 1.35863 1.39926 1.45855 1.63577 1.74277 2.24198 2.49017 2.49041 2.91186 3.08037 3.31512 3.33325 3.40400 3.49472 3.61987 3.63964 3.82832 3.99020 4.14843 4.29936 4.33682 4.42960 4.52787 4.59738 4.63513 4.66957 4.73823 4.83289 4.87342 4.88249 5.00697 5.08149 5.11493 5.13538 5.26963 5.32469 5.36613 5.46624 5.67750 5.82687 6.19418 6.24898 6.34800 6.86125 7.12265 7.12682 7.90528 8.05817 9.21817 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.018254 B = 0.002408 C = 0.002184 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1533.565863 B =11625.707467 C =12814.815732 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.181 3.819 3 H 0.047 0.953 4 N -0.754 5.754 5 C -0.215 4.215 6 H 0.060 0.940 7 C -0.067 4.067 8 N -0.986 5.986 9 Si 0.946 3.054 10 H -0.288 1.288 11 H -0.300 1.300 12 H -0.248 1.248 13 C -0.097 4.097 14 H 0.089 0.911 15 C -0.116 4.116 16 C 0.073 3.927 17 N -0.602 5.602 18 C 0.577 3.423 19 O -0.582 6.582 20 C -0.143 4.143 21 C -0.081 4.081 22 C -0.075 4.075 23 C 0.209 3.791 24 N -0.303 5.303 25 N -0.270 5.270 26 C 0.324 3.676 27 O -0.430 6.430 28 N -0.408 5.408 29 C 0.134 3.866 30 C 0.118 3.882 31 H 0.050 0.950 32 H 0.026 0.974 33 H 0.086 0.914 34 H 0.362 0.638 35 H 0.255 0.745 36 H 0.121 0.879 37 H 0.090 0.910 38 H 0.114 0.886 39 H 0.114 0.886 40 H 0.219 0.781 41 H 0.205 0.795 42 H 0.430 0.570 43 H 0.184 0.816 44 H 0.059 0.941 45 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.885 -4.246 -28.241 28.621 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.073 3.927 3 H 0.065 0.935 4 N -0.397 5.397 5 C -0.347 4.347 6 H 0.078 0.922 7 C -0.258 4.258 8 N -0.638 5.638 9 Si 0.775 3.225 10 H -0.215 1.215 11 H -0.227 1.227 12 H -0.173 1.173 13 C -0.117 4.117 14 H 0.108 0.892 15 C -0.154 4.154 16 C -0.047 4.047 17 N -0.333 5.333 18 C 0.367 3.633 19 O -0.463 6.463 20 C -0.150 4.150 21 C -0.104 4.104 22 C -0.095 4.095 23 C -0.041 4.041 24 N -0.149 5.149 25 N -0.119 5.119 26 C 0.023 3.977 27 O -0.233 6.233 28 N -0.100 5.100 29 C 0.009 3.991 30 C -0.005 4.005 31 H 0.069 0.931 32 H 0.045 0.955 33 H 0.105 0.895 34 H 0.195 0.805 35 H 0.064 0.936 36 H 0.139 0.861 37 H 0.108 0.892 38 H 0.132 0.868 39 H 0.131 0.869 40 H 0.235 0.765 41 H 0.222 0.778 42 H 0.292 0.708 43 H 0.201 0.799 44 H 0.077 0.923 45 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -0.840 -3.966 -29.462 29.740 hybrid contribution 1.124 -1.533 2.671 3.278 sum 0.283 -5.499 -26.791 27.351 Atomic orbital electron populations 1.22272 0.96557 1.01432 1.01233 1.20429 0.93344 0.94967 0.83947 0.93471 1.42883 1.80116 1.09524 1.07195 1.19009 1.34113 0.94351 0.87185 0.92230 1.25418 1.03010 1.01927 0.95443 1.69872 1.55363 1.37502 1.01031 0.85533 0.78229 0.81798 0.76954 1.21490 1.22714 1.17268 1.22562 0.92074 1.01317 0.95767 0.89225 1.22814 0.99537 1.01656 0.91380 1.23125 0.84118 1.02042 0.95377 1.48367 1.13585 1.62950 1.08425 1.17575 0.81651 0.77263 0.86842 1.90848 1.39070 1.54149 1.62253 1.20381 0.96210 1.05089 0.93340 1.24029 0.99092 0.96006 0.91230 1.20786 0.93686 0.98570 0.96489 1.22872 0.92538 1.02157 0.86566 1.74873 1.04983 1.17832 1.17231 1.74457 1.06596 1.16451 1.14356 1.21952 0.86686 1.03911 0.85144 1.84986 1.20622 1.32382 1.85319 1.44057 1.16580 1.41695 1.07678 1.21776 0.99529 0.96430 0.81315 1.22175 0.96900 1.01028 0.80397 0.93132 0.95509 0.89519 0.80528 0.93650 0.86115 0.89185 0.86821 0.86853 0.76512 0.77845 0.70760 0.79899 0.92262 0.93246 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.09 9.30 71.98 0.67 -3.42 16 2 C 0.18 5.47 2.40 44.99 0.11 5.58 16 3 H 0.05 1.55 8.07 -2.39 -0.02 1.53 16 4 N -0.75 -31.88 4.70 -322.94 -1.52 -33.40 16 5 C -0.22 -11.66 10.41 84.03 0.87 -10.79 16 6 H 0.06 3.54 8.06 -2.91 -0.02 3.52 16 7 C -0.07 -3.88 5.50 84.86 0.47 -3.42 16 8 N -0.99 -62.88 13.97 21.65 0.30 -62.58 16 9 Si 0.95 45.36 27.73 68.60 1.90 47.26 16 10 H -0.29 -13.91 7.11 99.48 0.71 -13.20 16 11 H -0.30 -14.72 7.11 99.48 0.71 -14.02 16 12 H -0.25 -10.52 6.52 99.48 0.65 -9.87 16 13 C -0.10 -2.04 2.63 -9.40 -0.02 -2.06 16 14 H 0.09 1.82 8.14 -2.38 -0.02 1.80 16 15 C -0.12 -1.12 5.44 31.78 0.17 -0.95 16 16 C 0.07 0.55 4.85 86.73 0.42 0.97 16 17 N -0.60 -11.47 3.33 -817.14 -2.72 -14.19 16 18 C 0.58 13.12 7.80 86.70 0.68 13.79 16 19 O -0.58 -19.00 16.62 -4.00 -0.07 -19.06 16 20 C -0.14 -2.23 5.98 -19.11 -0.11 -2.35 16 21 C -0.08 -0.60 8.68 23.78 0.21 -0.40 16 22 C -0.07 -0.65 10.09 22.38 0.23 -0.42 16 23 C 0.21 3.71 7.91 134.08 1.06 4.77 16 24 N -0.30 -7.09 12.28 -55.01 -0.68 -7.77 16 25 N -0.27 -6.65 12.19 -173.29 -2.11 -8.77 16 26 C 0.32 6.52 9.39 179.61 1.69 8.20 16 27 O -0.43 -6.29 13.65 -90.14 -1.23 -7.52 16 28 N -0.41 -7.48 2.95 -465.97 -1.38 -8.85 16 29 C 0.13 2.28 10.54 83.63 0.88 3.17 16 30 C 0.12 3.09 6.15 86.85 0.53 3.62 16 31 H 0.05 1.29 8.14 -2.39 -0.02 1.27 16 32 H 0.03 0.87 8.14 -2.39 -0.02 0.85 16 33 H 0.09 1.51 7.38 -2.39 -0.02 1.50 16 34 H 0.36 15.06 5.66 -92.71 -0.52 14.53 16 35 H 0.25 15.62 8.31 -92.70 -0.77 14.85 16 36 H 0.12 0.49 8.12 -2.39 -0.02 0.47 16 37 H 0.09 0.85 8.04 -2.39 -0.02 0.83 16 38 H 0.11 0.19 6.61 -2.38 -0.02 0.18 16 39 H 0.11 0.22 6.74 -2.39 -0.02 0.20 16 40 H 0.22 0.08 2.99 -3.58 -0.01 0.06 16 41 H 0.20 0.27 8.06 -2.91 -0.02 0.25 16 42 H 0.43 1.46 9.06 -74.06 -0.67 0.79 16 43 H 0.18 3.10 7.60 -2.91 -0.02 3.08 16 44 H 0.06 1.79 8.03 -2.39 -0.02 1.77 16 45 H 0.05 1.61 8.09 -2.39 -0.02 1.59 16 Total: -1.00 -86.76 370.45 0.16 -86.60 By element: Atomic # 1 Polarization: 12.17 SS G_CDS: -0.19 Total: 11.98 kcal Atomic # 6 Polarization: 8.46 SS G_CDS: 7.84 Total: 16.31 kcal Atomic # 7 Polarization: -127.46 SS G_CDS: -8.10 Total: -135.56 kcal Atomic # 8 Polarization: -25.28 SS G_CDS: -1.30 Total: -26.58 kcal Atomic # 14 Polarization: 45.36 SS G_CDS: 1.90 Total: 47.26 kcal Total: -86.76 0.16 -86.60 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001484349481.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 144.386 kcal (2) G-P(sol) polarization free energy of solvation -86.756 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.630 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.160 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.596 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.790 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.71 seconds