Wall clock time and date at job start Wed Apr 1 2020 04:01:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08994 * 109.47734 * 2 1 4 4 N 1.46500 * 109.47151 * 239.99992 * 2 1 3 5 5 C 1.36931 * 120.00081 * 84.99985 * 4 2 1 6 6 H 1.07997 * 120.00433 * 0.02562 * 5 4 2 7 7 C 1.38817 * 119.99961 * 180.02562 * 5 4 2 8 8 N 1.31616 * 120.00209 * 0.02562 * 7 5 4 9 9 Si 1.86803 * 119.99923 * 180.02562 * 7 5 4 10 10 H 1.48495 * 109.47290 * 59.99926 * 9 7 5 11 11 H 1.48496 * 109.47171 * 180.02562 * 9 7 5 12 12 H 1.48502 * 109.46984 * 299.99957 * 9 7 5 13 13 C 1.53008 * 109.47277 * 120.00037 * 2 1 3 14 14 H 1.08996 * 109.55009 * 300.12373 * 13 2 1 15 15 C 1.53286 * 109.51251 * 179.97438 * 13 2 1 16 16 N 1.47156 * 108.38320 * 187.77591 * 15 13 2 17 17 C 1.34783 * 120.97995 * 230.51334 * 16 15 13 18 18 O 1.21554 * 120.00130 * 355.93319 * 17 16 15 19 19 C 1.47770 * 119.99807 * 175.92723 * 17 16 15 20 20 C 1.39640 * 121.06958 * 51.87929 * 19 17 16 21 21 C 1.38340 * 119.37051 * 179.72691 * 20 19 17 22 22 N 1.31720 * 121.54580 * 0.56125 * 21 20 19 23 23 C 1.32113 * 121.95175 * 359.71314 * 22 21 20 24 24 N 1.37950 * 133.81124 * 179.97438 * 23 22 21 25 25 H 0.97005 * 126.35275 * 0.02562 * 24 23 22 26 26 C 1.35981 * 107.28242 * 180.02562 * 24 23 22 27 27 N 1.30276 * 110.06180 * 359.97438 * 26 24 23 28 28 C 1.34653 * 109.66980 * 0.02562 * 27 26 24 29 29 C 1.47143 * 118.03764 * 50.78543 * 16 15 13 30 30 C 1.53716 * 108.16308 * 309.15885 * 29 16 15 31 31 O 1.42962 * 109.50705 * 60.24903 * 13 2 1 32 32 H 1.08990 * 109.47375 * 180.02562 * 1 2 3 33 33 H 1.09008 * 109.46722 * 300.00399 * 1 2 3 34 34 H 1.09000 * 109.46887 * 59.99217 * 1 2 3 35 35 H 0.97003 * 119.99560 * 265.00221 * 4 2 1 36 36 H 0.97001 * 120.00389 * 179.97438 * 8 7 5 37 37 H 1.09000 * 109.68379 * 68.05399 * 15 13 2 38 38 H 1.08997 * 109.68671 * 307.49532 * 15 13 2 39 39 H 1.07997 * 120.31287 * 359.97263 * 20 19 17 40 40 H 1.08003 * 119.22303 * 180.27365 * 21 20 19 41 41 H 1.08005 * 124.96493 * 180.02562 * 26 24 23 42 42 H 1.08996 * 109.68655 * 68.94030 * 29 16 15 43 43 H 1.09000 * 109.68276 * 189.49340 * 29 16 15 44 44 H 1.09001 * 109.66053 * 292.57544 * 30 29 16 45 45 H 1.08999 * 109.49104 * 172.39620 * 30 29 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0183 -0.6906 -1.1962 5 6 2.1491 -0.0075 -2.3757 6 1 1.8926 1.0404 -2.4242 7 6 2.6113 -0.6621 -3.5092 8 7 2.9234 -1.9393 -3.4504 9 14 2.7904 0.2700 -5.1182 10 1 3.7464 1.3917 -4.9368 11 1 3.2981 -0.6487 -6.1686 12 1 1.4684 0.8078 -5.5285 13 6 2.0400 -0.7213 1.2493 14 1 1.6756 -0.2098 2.1401 15 6 3.5729 -0.7224 1.2499 16 7 4.0359 -1.5780 2.3540 17 6 4.9520 -1.1350 3.2378 18 8 5.4629 -0.0423 3.0874 19 6 5.3352 -1.9775 4.3897 20 6 5.7378 -3.3026 4.2109 21 6 6.0944 -4.0580 5.3137 22 7 6.0532 -3.5603 6.5325 23 6 5.6759 -2.3161 6.7672 24 7 5.5433 -1.5583 7.9122 25 1 5.7255 -1.8501 8.8192 26 6 5.1099 -0.3263 7.5334 27 7 4.9698 -0.2804 6.2390 28 6 5.3010 -1.4712 5.7047 29 6 3.4739 -2.9336 2.4610 30 6 1.9417 -2.8229 2.4046 31 8 1.5687 -2.0710 1.2471 32 1 -0.3633 -1.0275 0.0005 33 1 -0.3633 0.5139 0.8900 34 1 -0.3633 0.5140 -0.8899 35 1 2.2489 -1.6318 -1.1525 36 1 3.2460 -2.3968 -4.2426 37 1 3.9407 0.2936 1.3937 38 1 3.9402 -1.1156 0.3020 39 1 5.7742 -3.7325 3.2208 40 1 6.4097 -5.0813 5.1722 41 1 4.9117 0.4943 8.2070 42 1 3.8312 -3.5457 1.6330 43 1 3.7760 -3.3827 3.4072 44 1 1.5772 -2.3188 3.2996 45 1 1.5069 -3.8207 2.3461 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001485637921.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:01:10 Heat of formation + Delta-G solvation = 42.531097 kcal Electronic energy + Delta-G solvation = -30627.282707 eV Core-core repulsion = 26454.051349 eV Total energy + Delta-G solvation = -4173.231358 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -42.78098 -40.31968 -38.74100 -38.06624 -35.47259 -34.51831 -34.00405 -32.30645 -31.75296 -30.14638 -30.07495 -28.35348 -27.74462 -25.16370 -24.13120 -23.65976 -23.35580 -22.65087 -21.81008 -20.06906 -19.63799 -18.42629 -18.08961 -17.39266 -17.13547 -16.43771 -16.11588 -15.87998 -15.53955 -15.46174 -15.10208 -14.69811 -14.45843 -14.33322 -14.17009 -13.72065 -13.39118 -13.16402 -13.10953 -13.08022 -12.63242 -12.35540 -11.94231 -11.84309 -11.45635 -11.30965 -11.28854 -11.13292 -10.79306 -10.74682 -10.45450 -10.32212 -10.17237 -9.91822 -9.84741 -9.53089 -9.44437 -9.18279 -8.91008 -8.87496 -8.33994 -6.88417 -5.69789 -2.97932 0.16319 0.78156 2.11546 2.39382 2.65086 2.88231 3.44132 3.48999 3.53465 3.54077 3.68576 3.98963 4.02317 4.20557 4.39249 4.62118 4.64734 4.74725 4.84107 5.00237 5.03635 5.15813 5.30636 5.36478 5.44359 5.47372 5.54321 5.64659 5.66332 5.73939 5.82261 5.90658 6.05419 6.13090 6.25974 6.38109 6.45366 6.59180 6.66154 6.71175 6.82562 7.17580 7.33062 7.38252 7.43436 7.51203 7.76161 8.13136 8.48638 9.60897 10.17921 10.55530 11.52460 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.018500 B = 0.002675 C = 0.002630 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1513.185848 B =10465.471258 C =10645.380663 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.183 3.817 3 H 0.060 0.940 4 N -0.717 5.717 5 C -0.238 4.238 6 H 0.069 0.931 7 C -0.012 4.012 8 N -0.931 5.931 9 Si 0.905 3.095 10 H -0.286 1.286 11 H -0.292 1.292 12 H -0.287 1.287 13 C 0.078 3.922 14 H 0.055 0.945 15 C 0.088 3.912 16 N -0.603 5.603 17 C 0.562 3.438 18 O -0.513 6.513 19 C -0.020 4.020 20 C -0.155 4.155 21 C 0.138 3.862 22 N -0.473 5.473 23 C 0.236 3.764 24 N -0.589 5.589 25 H 0.430 0.570 26 C 0.280 3.720 27 N -0.475 5.475 28 C 0.045 3.955 29 C 0.063 3.937 30 C 0.049 3.951 31 O -0.358 6.358 32 H 0.055 0.945 33 H 0.032 0.968 34 H 0.053 0.947 35 H 0.390 0.610 36 H 0.254 0.746 37 H 0.097 0.903 38 H 0.100 0.900 39 H 0.155 0.845 40 H 0.175 0.825 41 H 0.228 0.772 42 H 0.087 0.913 43 H 0.091 0.909 44 H 0.048 0.952 45 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.527 -4.991 25.704 26.421 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.072 3.928 3 H 0.078 0.922 4 N -0.359 5.359 5 C -0.369 4.369 6 H 0.087 0.913 7 C -0.208 4.208 8 N -0.579 5.579 9 Si 0.736 3.264 10 H -0.213 1.213 11 H -0.218 1.218 12 H -0.214 1.214 13 C 0.019 3.981 14 H 0.073 0.927 15 C -0.034 4.034 16 N -0.337 5.337 17 C 0.348 3.652 18 O -0.388 6.388 19 C -0.033 4.033 20 C -0.178 4.178 21 C -0.028 4.028 22 N -0.186 5.186 23 C -0.001 4.001 24 N -0.204 5.204 25 H 0.270 0.730 26 C -0.008 4.008 27 N -0.194 5.194 28 C -0.078 4.078 29 C -0.060 4.060 30 C -0.030 4.030 31 O -0.276 6.276 32 H 0.074 0.926 33 H 0.051 0.949 34 H 0.073 0.927 35 H 0.225 0.775 36 H 0.064 0.936 37 H 0.115 0.885 38 H 0.118 0.882 39 H 0.172 0.828 40 H 0.192 0.808 41 H 0.244 0.756 42 H 0.105 0.895 43 H 0.109 0.891 44 H 0.066 0.934 45 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 3.660 -4.099 25.517 26.102 hybrid contribution 0.443 -0.122 -0.343 0.573 sum 4.103 -4.221 25.174 25.853 Atomic orbital electron populations 1.22347 0.98524 1.01541 0.99623 1.20256 0.92746 0.94670 0.85133 0.92190 1.42374 1.77673 1.11007 1.04879 1.19200 1.36523 0.93783 0.87431 0.91281 1.24707 1.02272 0.95920 0.97903 1.69658 1.50864 1.08565 1.28826 0.86306 0.77722 0.78625 0.83756 1.21316 1.21816 1.21388 1.22929 0.92159 0.83375 0.99641 0.92700 1.22490 0.94957 0.96484 0.89419 1.48125 1.41284 1.15551 1.28748 1.17940 0.79881 0.85900 0.81473 1.90826 1.52788 1.20715 1.74508 1.19580 0.98641 0.93749 0.91298 1.22273 1.01105 0.92533 1.01893 1.22538 0.95188 0.99968 0.85138 1.66214 1.15773 1.10867 1.25733 1.18938 1.02670 0.91263 0.87197 1.42904 1.57224 1.11658 1.08582 0.72951 1.25674 0.95198 0.87028 0.92851 1.70258 1.21358 1.21634 1.06118 1.19170 1.03855 0.91821 0.92986 1.22828 0.95714 0.83973 1.03534 1.22955 0.92875 0.97554 0.89576 1.88108 1.75327 1.23539 1.40578 0.92559 0.94878 0.92745 0.77507 0.93585 0.88479 0.88155 0.82778 0.80792 0.75568 0.89480 0.89073 0.93394 0.87898 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.01 9.35 37.16 0.35 -2.67 16 2 C 0.18 3.69 2.73 -67.93 -0.19 3.50 16 3 H 0.06 1.21 8.08 -51.93 -0.42 0.79 16 4 N -0.72 -17.78 4.29 -53.43 -0.23 -18.01 16 5 C -0.24 -6.56 9.93 -15.06 -0.15 -6.71 16 6 H 0.07 1.85 7.83 -52.49 -0.41 1.44 16 7 C -0.01 -0.34 5.50 -17.43 -0.10 -0.44 16 8 N -0.93 -27.97 13.06 55.49 0.72 -27.25 16 9 Si 0.90 22.55 29.55 -169.99 -5.02 17.52 16 10 H -0.29 -7.06 7.11 56.52 0.40 -6.65 16 11 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 12 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 13 C 0.08 1.37 2.53 -26.58 -0.07 1.31 16 14 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 15 C 0.09 1.59 5.85 -3.54 -0.02 1.57 16 16 N -0.60 -9.37 3.01 -173.17 -0.52 -9.89 16 17 C 0.56 9.35 7.29 -12.36 -0.09 9.26 16 18 O -0.51 -10.54 16.57 5.32 0.09 -10.45 16 19 C -0.02 -0.27 4.99 -104.45 -0.52 -0.79 16 20 C -0.16 -1.51 7.53 -39.02 -0.29 -1.80 16 21 C 0.14 1.15 11.14 -17.56 -0.20 0.95 16 22 N -0.47 -4.86 10.35 -12.30 -0.13 -4.99 16 23 C 0.24 2.58 8.46 -155.64 -1.32 1.26 16 24 N -0.59 -4.13 6.23 -13.21 -0.08 -4.22 16 25 H 0.43 1.41 8.96 -40.82 -0.37 1.04 16 26 C 0.28 2.11 12.97 -89.70 -1.16 0.94 16 27 N -0.48 -6.27 11.23 -11.89 -0.13 -6.40 16 28 C 0.04 0.60 6.99 -84.62 -0.59 0.01 16 29 C 0.06 0.76 5.65 -3.32 -0.02 0.74 16 30 C 0.05 0.62 7.00 37.53 0.26 0.88 16 31 O -0.36 -6.15 9.22 -35.23 -0.32 -6.47 16 32 H 0.06 1.10 7.69 -51.93 -0.40 0.70 16 33 H 0.03 0.53 8.14 -51.92 -0.42 0.10 16 34 H 0.05 1.08 8.14 -51.93 -0.42 0.65 16 35 H 0.39 10.39 7.20 -40.82 -0.29 10.10 16 36 H 0.25 7.45 8.31 -40.82 -0.34 7.11 16 37 H 0.10 1.85 7.11 -51.93 -0.37 1.49 16 38 H 0.10 2.08 7.27 -51.93 -0.38 1.70 16 39 H 0.15 1.19 7.24 -52.49 -0.38 0.81 16 40 H 0.18 0.78 8.06 -52.48 -0.42 0.36 16 41 H 0.23 0.47 8.06 -52.48 -0.42 0.05 16 42 H 0.09 1.03 8.14 -51.93 -0.42 0.61 16 43 H 0.09 0.88 4.84 -51.93 -0.25 0.62 16 44 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 45 H 0.10 1.06 8.14 -51.93 -0.42 0.64 16 LS Contribution 372.25 15.07 5.61 5.61 Total: -1.00 -38.02 372.25 -9.91 -47.93 By element: Atomic # 1 Polarization: 14.39 SS G_CDS: -5.78 Total: 8.60 kcal Atomic # 6 Polarization: 12.12 SS G_CDS: -4.10 Total: 8.02 kcal Atomic # 7 Polarization: -70.38 SS G_CDS: -0.37 Total: -70.75 kcal Atomic # 8 Polarization: -16.69 SS G_CDS: -0.24 Total: -16.93 kcal Atomic # 14 Polarization: 22.55 SS G_CDS: -5.02 Total: 17.52 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -38.02 -9.91 -47.93 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001485637921.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.460 kcal (2) G-P(sol) polarization free energy of solvation -38.023 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.437 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.906 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.929 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.531 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds