Wall clock time and date at job start Wed Apr 1 2020 04:01:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08994 * 109.47734 * 2 1 4 4 N 1.46500 * 109.47151 * 239.99992 * 2 1 3 5 5 C 1.36931 * 120.00081 * 84.99985 * 4 2 1 6 6 H 1.07997 * 120.00433 * 0.02562 * 5 4 2 7 7 C 1.38817 * 119.99961 * 180.02562 * 5 4 2 8 8 N 1.31616 * 120.00209 * 0.02562 * 7 5 4 9 9 Si 1.86803 * 119.99923 * 180.02562 * 7 5 4 10 10 H 1.48495 * 109.47290 * 59.99926 * 9 7 5 11 11 H 1.48496 * 109.47171 * 180.02562 * 9 7 5 12 12 H 1.48502 * 109.46984 * 299.99957 * 9 7 5 13 13 C 1.53008 * 109.47277 * 120.00037 * 2 1 3 14 14 H 1.08996 * 109.55009 * 300.12373 * 13 2 1 15 15 C 1.53286 * 109.51251 * 179.97438 * 13 2 1 16 16 N 1.47156 * 108.38320 * 187.77591 * 15 13 2 17 17 C 1.34783 * 120.97995 * 230.51334 * 16 15 13 18 18 O 1.21554 * 120.00130 * 355.93319 * 17 16 15 19 19 C 1.47770 * 119.99807 * 175.92723 * 17 16 15 20 20 C 1.39640 * 121.06958 * 51.87929 * 19 17 16 21 21 C 1.38340 * 119.37051 * 179.72691 * 20 19 17 22 22 N 1.31720 * 121.54580 * 0.56125 * 21 20 19 23 23 C 1.32113 * 121.95175 * 359.71314 * 22 21 20 24 24 N 1.37950 * 133.81124 * 179.97438 * 23 22 21 25 25 H 0.97005 * 126.35275 * 0.02562 * 24 23 22 26 26 C 1.35981 * 107.28242 * 180.02562 * 24 23 22 27 27 N 1.30276 * 110.06180 * 359.97438 * 26 24 23 28 28 C 1.34653 * 109.66980 * 0.02562 * 27 26 24 29 29 C 1.47143 * 118.03764 * 50.78543 * 16 15 13 30 30 C 1.53716 * 108.16308 * 309.15885 * 29 16 15 31 31 O 1.42962 * 109.50705 * 60.24903 * 13 2 1 32 32 H 1.08990 * 109.47375 * 180.02562 * 1 2 3 33 33 H 1.09008 * 109.46722 * 300.00399 * 1 2 3 34 34 H 1.09000 * 109.46887 * 59.99217 * 1 2 3 35 35 H 0.97003 * 119.99560 * 265.00221 * 4 2 1 36 36 H 0.97001 * 120.00389 * 179.97438 * 8 7 5 37 37 H 1.09000 * 109.68379 * 68.05399 * 15 13 2 38 38 H 1.08997 * 109.68671 * 307.49532 * 15 13 2 39 39 H 1.07997 * 120.31287 * 359.97263 * 20 19 17 40 40 H 1.08003 * 119.22303 * 180.27365 * 21 20 19 41 41 H 1.08005 * 124.96493 * 180.02562 * 26 24 23 42 42 H 1.08996 * 109.68655 * 68.94030 * 29 16 15 43 43 H 1.09000 * 109.68276 * 189.49340 * 29 16 15 44 44 H 1.09001 * 109.66053 * 292.57544 * 30 29 16 45 45 H 1.08999 * 109.49104 * 172.39620 * 30 29 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0183 -0.6906 -1.1962 5 6 2.1491 -0.0075 -2.3757 6 1 1.8926 1.0404 -2.4242 7 6 2.6113 -0.6621 -3.5092 8 7 2.9234 -1.9393 -3.4504 9 14 2.7904 0.2700 -5.1182 10 1 3.7464 1.3917 -4.9368 11 1 3.2981 -0.6487 -6.1686 12 1 1.4684 0.8078 -5.5285 13 6 2.0400 -0.7213 1.2493 14 1 1.6756 -0.2098 2.1401 15 6 3.5729 -0.7224 1.2499 16 7 4.0359 -1.5780 2.3540 17 6 4.9520 -1.1350 3.2378 18 8 5.4629 -0.0423 3.0874 19 6 5.3352 -1.9775 4.3897 20 6 5.7378 -3.3026 4.2109 21 6 6.0944 -4.0580 5.3137 22 7 6.0532 -3.5603 6.5325 23 6 5.6759 -2.3161 6.7672 24 7 5.5433 -1.5583 7.9122 25 1 5.7255 -1.8501 8.8192 26 6 5.1099 -0.3263 7.5334 27 7 4.9698 -0.2804 6.2390 28 6 5.3010 -1.4712 5.7047 29 6 3.4739 -2.9336 2.4610 30 6 1.9417 -2.8229 2.4046 31 8 1.5687 -2.0710 1.2471 32 1 -0.3633 -1.0275 0.0005 33 1 -0.3633 0.5139 0.8900 34 1 -0.3633 0.5140 -0.8899 35 1 2.2489 -1.6318 -1.1525 36 1 3.2460 -2.3968 -4.2426 37 1 3.9407 0.2936 1.3937 38 1 3.9402 -1.1156 0.3020 39 1 5.7742 -3.7325 3.2208 40 1 6.4097 -5.0813 5.1722 41 1 4.9117 0.4943 8.2070 42 1 3.8312 -3.5457 1.6330 43 1 3.7760 -3.3827 3.4072 44 1 1.5772 -2.3188 3.2996 45 1 1.5069 -3.8207 2.3461 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001485637921.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:01:08 Heat of formation + Delta-G solvation = 14.611755 kcal Electronic energy + Delta-G solvation = -30628.493381 eV Core-core repulsion = 26454.051349 eV Total energy + Delta-G solvation = -4174.442032 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -43.50071 -41.53613 -39.80514 -39.12202 -37.10846 -35.87648 -34.81741 -34.15036 -32.67151 -31.53078 -30.85351 -30.12198 -29.00192 -26.28310 -25.63993 -25.04161 -24.28463 -23.70069 -22.73963 -21.34192 -20.92196 -19.51053 -19.20710 -18.84136 -18.17970 -17.69428 -17.26353 -16.83672 -16.69601 -16.53568 -16.27882 -16.07191 -15.84594 -15.51214 -15.14859 -15.06554 -14.84414 -14.63643 -14.32933 -14.02944 -13.81098 -13.64179 -13.46881 -13.15487 -13.01427 -12.72836 -12.54987 -12.49667 -12.24422 -12.20976 -12.03360 -11.85175 -11.68693 -11.61465 -11.26164 -11.09380 -10.92212 -10.31021 -9.99276 -9.69205 -9.61319 -8.93464 -7.87626 -5.14753 -0.63568 0.04539 1.36653 1.49215 1.51713 1.57219 1.57847 1.67226 1.80781 2.59495 2.63198 2.77082 2.98156 3.21197 3.45607 3.47099 3.66602 3.68125 3.91621 3.92453 3.94330 4.01644 4.14094 4.18350 4.22774 4.29682 4.34250 4.50545 4.60462 4.62649 4.74378 4.77863 4.80229 4.84292 4.96662 5.00335 5.09214 5.19654 5.26075 5.44701 5.55538 5.60501 6.15800 6.16612 6.23410 6.34380 6.66902 6.76681 6.88527 7.41328 8.16367 8.43125 9.35332 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.018500 B = 0.002675 C = 0.002630 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1513.185848 B =10465.471258 C =10645.380663 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.174 3.826 3 H 0.057 0.943 4 N -0.725 5.725 5 C -0.237 4.237 6 H 0.074 0.926 7 C -0.073 4.073 8 N -0.965 5.965 9 Si 0.967 3.033 10 H -0.282 1.282 11 H -0.297 1.297 12 H -0.279 1.279 13 C 0.094 3.906 14 H 0.071 0.929 15 C 0.097 3.903 16 N -0.602 5.602 17 C 0.560 3.440 18 O -0.567 6.567 19 C -0.054 4.054 20 C -0.141 4.141 21 C 0.144 3.856 22 N -0.475 5.475 23 C 0.225 3.775 24 N -0.572 5.572 25 H 0.449 0.551 26 C 0.306 3.694 27 N -0.542 5.542 28 C 0.018 3.982 29 C 0.063 3.937 30 C 0.043 3.957 31 O -0.379 6.379 32 H 0.047 0.953 33 H 0.065 0.935 34 H 0.039 0.961 35 H 0.379 0.621 36 H 0.249 0.751 37 H 0.078 0.922 38 H 0.067 0.933 39 H 0.173 0.827 40 H 0.219 0.781 41 H 0.278 0.722 42 H 0.090 0.910 43 H 0.122 0.878 44 H 0.057 0.943 45 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.230 -6.100 28.342 29.171 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.065 3.935 3 H 0.075 0.925 4 N -0.366 5.366 5 C -0.369 4.369 6 H 0.091 0.909 7 C -0.266 4.266 8 N -0.616 5.616 9 Si 0.797 3.203 10 H -0.208 1.208 11 H -0.223 1.223 12 H -0.206 1.206 13 C 0.035 3.965 14 H 0.089 0.911 15 C -0.025 4.025 16 N -0.334 5.334 17 C 0.349 3.651 18 O -0.446 6.446 19 C -0.067 4.067 20 C -0.164 4.164 21 C -0.022 4.022 22 N -0.188 5.188 23 C -0.013 4.013 24 N -0.188 5.188 25 H 0.293 0.707 26 C 0.019 3.981 27 N -0.262 5.262 28 C -0.105 4.105 29 C -0.059 4.059 30 C -0.034 4.034 31 O -0.298 6.298 32 H 0.066 0.934 33 H 0.084 0.916 34 H 0.059 0.941 35 H 0.212 0.788 36 H 0.058 0.942 37 H 0.096 0.904 38 H 0.086 0.914 39 H 0.190 0.810 40 H 0.235 0.765 41 H 0.293 0.707 42 H 0.108 0.892 43 H 0.139 0.861 44 H 0.075 0.925 45 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 3.333 -5.220 28.234 28.905 hybrid contribution 0.541 0.218 -0.983 1.143 sum 3.874 -5.001 27.251 27.975 Atomic orbital electron populations 1.22167 0.96885 1.01215 1.00518 1.20471 0.93751 0.94525 0.84730 0.92466 1.42458 1.78016 1.10521 1.05604 1.19569 1.34827 0.94073 0.88401 0.90850 1.25452 1.03197 0.96834 1.01069 1.69811 1.52619 1.09981 1.29201 0.85309 0.77811 0.77318 0.79898 1.20818 1.22312 1.20575 1.22596 0.91247 0.84108 0.98567 0.91144 1.22107 0.95570 0.95818 0.89047 1.48173 1.41059 1.16487 1.27691 1.18525 0.78958 0.85619 0.81976 1.90774 1.54726 1.23256 1.75847 1.19485 1.01987 0.95000 0.90196 1.22539 0.99436 0.90991 1.03399 1.23243 0.93676 1.01314 0.83961 1.66367 1.15502 1.10398 1.26560 1.19147 1.02951 0.91364 0.87790 1.42927 1.56142 1.11010 1.08701 0.70699 1.26639 0.91756 0.87774 0.91960 1.70218 1.24571 1.22581 1.08843 1.19440 1.04731 0.92730 0.93619 1.23053 0.95330 0.82202 1.05276 1.23272 0.93263 0.98486 0.88350 1.88067 1.75559 1.23222 1.42920 0.93420 0.91611 0.94139 0.78824 0.94223 0.90403 0.91435 0.80978 0.76514 0.70676 0.89152 0.86068 0.92494 0.84872 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.48 9.35 71.98 0.67 -4.80 16 2 C 0.17 7.13 2.73 44.99 0.12 7.25 16 3 H 0.06 2.36 8.08 -2.39 -0.02 2.34 16 4 N -0.72 -36.92 4.29 -322.94 -1.38 -38.31 16 5 C -0.24 -13.28 9.93 84.04 0.83 -12.45 16 6 H 0.07 3.97 7.83 -2.91 -0.02 3.95 16 7 C -0.07 -4.25 5.50 84.86 0.47 -3.78 16 8 N -0.97 -59.51 13.06 21.65 0.28 -59.23 16 9 Si 0.97 47.13 29.55 68.60 2.03 49.16 16 10 H -0.28 -13.38 7.11 99.48 0.71 -12.67 16 11 H -0.30 -14.57 7.11 99.48 0.71 -13.86 16 12 H -0.28 -13.14 7.11 99.48 0.71 -12.44 16 13 C 0.09 3.33 2.53 30.69 0.08 3.41 16 14 H 0.07 2.28 8.14 -2.39 -0.02 2.26 16 15 C 0.10 3.70 5.85 86.35 0.50 4.21 16 16 N -0.60 -19.10 3.01 -820.06 -2.47 -21.57 16 17 C 0.56 19.35 7.29 86.76 0.63 19.98 16 18 O -0.57 -24.82 16.57 -3.88 -0.06 -24.88 16 19 C -0.05 -1.44 4.99 -19.75 -0.10 -1.54 16 20 C -0.14 -2.48 7.53 22.63 0.17 -2.31 16 21 C 0.14 1.95 11.14 84.73 0.94 2.90 16 22 N -0.48 -8.50 10.35 -192.83 -2.00 -10.50 16 23 C 0.23 4.50 8.46 133.92 1.13 5.64 16 24 N -0.57 -6.59 6.23 -195.71 -1.22 -7.81 16 25 H 0.45 1.53 8.96 -92.70 -0.83 0.70 16 26 C 0.31 3.94 12.97 180.03 2.34 6.27 16 27 N -0.54 -14.12 11.23 -191.52 -2.15 -16.27 16 28 C 0.02 0.47 6.99 40.01 0.28 0.75 16 29 C 0.06 1.45 5.65 86.50 0.49 1.94 16 30 C 0.04 1.03 7.00 72.22 0.51 1.53 16 31 O -0.38 -12.83 9.22 -148.98 -1.37 -14.21 16 32 H 0.05 1.83 7.69 -2.39 -0.02 1.82 16 33 H 0.07 1.99 8.14 -2.38 -0.02 1.97 16 34 H 0.04 1.58 8.14 -2.39 -0.02 1.56 16 35 H 0.38 20.88 7.20 -92.71 -0.67 20.21 16 36 H 0.25 14.97 8.31 -92.71 -0.77 14.19 16 37 H 0.08 3.21 7.11 -2.39 -0.02 3.19 16 38 H 0.07 3.00 7.27 -2.39 -0.02 2.98 16 39 H 0.17 2.27 7.24 -2.91 -0.02 2.25 16 40 H 0.22 0.93 8.06 -2.91 -0.02 0.91 16 41 H 0.28 0.15 8.06 -2.91 -0.02 0.12 16 42 H 0.09 2.05 8.14 -2.39 -0.02 2.03 16 43 H 0.12 2.06 4.84 -2.39 -0.01 2.05 16 44 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 45 H 0.13 2.36 8.14 -2.39 -0.02 2.34 16 Total: -1.00 -87.77 372.25 0.28 -87.49 By element: Atomic # 1 Polarization: 27.58 SS G_CDS: -0.44 Total: 27.14 kcal Atomic # 6 Polarization: 19.91 SS G_CDS: 9.07 Total: 28.98 kcal Atomic # 7 Polarization: -144.75 SS G_CDS: -8.94 Total: -153.69 kcal Atomic # 8 Polarization: -37.65 SS G_CDS: -1.44 Total: -39.09 kcal Atomic # 14 Polarization: 47.13 SS G_CDS: 2.03 Total: 49.16 kcal Total: -87.77 0.28 -87.49 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001485637921.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.100 kcal (2) G-P(sol) polarization free energy of solvation -87.770 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.331 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.281 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.489 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.612 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds