Wall clock time and date at job start Wed Apr 1 2020 04:01:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09003 * 109.47501 * 2 1 4 4 N 1.46500 * 109.47412 * 119.99683 * 2 1 3 5 5 C 1.36941 * 120.00164 * 275.00162 * 4 2 1 6 6 H 1.08002 * 119.99754 * 359.97438 * 5 4 2 7 7 C 1.38814 * 119.99835 * 179.97438 * 5 4 2 8 8 N 1.31623 * 120.00203 * 359.97438 * 7 5 4 9 9 Si 1.86801 * 119.99850 * 179.97438 * 7 5 4 10 10 H 1.48503 * 109.47040 * 60.00207 * 9 7 5 11 11 H 1.48492 * 109.46994 * 179.97438 * 9 7 5 12 12 H 1.48494 * 109.47193 * 300.00021 * 9 7 5 13 13 C 1.52996 * 109.47225 * 240.00025 * 2 1 3 14 14 H 1.09004 * 109.51572 * 185.10520 * 13 2 1 15 15 C 1.53295 * 109.51359 * 65.00087 * 13 2 1 16 16 N 1.47161 * 108.38088 * 187.77746 * 15 13 2 17 17 C 1.34780 * 120.97465 * 230.50782 * 16 15 13 18 18 O 1.21557 * 120.00606 * 5.57523 * 17 16 15 19 19 C 1.47763 * 119.99539 * 185.57828 * 17 16 15 20 20 C 1.39642 * 121.07640 * 44.82435 * 19 17 16 21 21 C 1.38338 * 119.37452 * 180.02562 * 20 19 17 22 22 N 1.31727 * 121.54976 * 0.03640 * 21 20 19 23 23 C 1.32117 * 121.94642 * 0.02562 * 22 21 20 24 24 N 1.37943 * 133.80864 * 180.02562 * 23 22 21 25 25 H 0.97001 * 126.35420 * 0.02562 * 24 23 22 26 26 C 1.35986 * 107.28721 * 179.97438 * 24 23 22 27 27 N 1.30286 * 110.05757 * 359.77782 * 26 24 23 28 28 C 1.34652 * 109.66440 * 0.35942 * 27 26 24 29 29 C 1.47149 * 118.03725 * 50.78849 * 16 15 13 30 30 C 1.53710 * 108.15708 * 309.15383 * 29 16 15 31 31 O 1.42958 * 109.15354 * 52.54316 * 30 29 16 32 32 H 1.08998 * 109.47176 * 180.02562 * 1 2 3 33 33 H 1.09002 * 109.47127 * 299.99994 * 1 2 3 34 34 H 1.09001 * 109.47291 * 59.99806 * 1 2 3 35 35 H 0.97001 * 119.99818 * 94.99660 * 4 2 1 36 36 H 0.96995 * 120.00077 * 179.97438 * 8 7 5 37 37 H 1.08996 * 109.68177 * 68.05186 * 15 13 2 38 38 H 1.08997 * 109.67945 * 307.49714 * 15 13 2 39 39 H 1.07993 * 120.30984 * 0.07650 * 20 19 17 40 40 H 1.07997 * 119.22268 * 180.02562 * 21 20 19 41 41 H 1.07995 * 124.97095 * 180.02562 * 26 24 23 42 42 H 1.08999 * 109.68404 * 68.93515 * 29 16 15 43 43 H 1.08999 * 109.67897 * 189.48872 * 29 16 15 44 44 H 1.09006 * 109.65839 * 292.56813 * 30 29 16 45 45 H 1.09008 * 109.48553 * 172.40563 * 30 29 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6905 1.1962 5 6 2.1491 -0.0073 2.3758 6 1 1.8926 1.0406 2.4241 7 6 2.6114 -0.6618 3.5093 8 7 2.9236 -1.9392 3.4505 9 14 2.7905 0.2702 5.1182 10 1 1.4685 0.8080 5.5285 11 1 3.2982 -0.6484 6.1685 12 1 3.7465 1.3919 4.9367 13 6 2.0400 -0.7212 -1.2492 14 1 3.1262 -0.8015 -1.2054 15 6 1.6349 0.0697 -2.4983 16 7 1.9698 -0.7336 -3.6850 17 6 2.6764 -0.2049 -4.7037 18 8 3.1338 0.9173 -4.6084 19 6 2.8951 -0.9895 -5.9366 20 6 1.8514 -1.6996 -6.5337 21 6 2.0958 -2.4230 -7.6873 22 7 3.2920 -2.4595 -8.2377 23 6 4.3197 -1.8103 -7.7201 24 7 5.6449 -1.6783 -8.0795 25 1 6.0751 -2.0831 -8.8490 26 6 6.2360 -0.8743 -7.1557 27 7 5.3634 -0.5039 -6.2620 28 6 4.1649 -1.0478 -6.5462 29 6 1.5049 -2.1290 -3.7293 30 6 1.9209 -2.8143 -2.4178 31 8 1.4658 -2.0290 -1.3134 32 1 -0.3633 -1.0276 0.0005 33 1 -0.3633 0.5138 0.8900 34 1 -0.3634 0.5139 -0.8900 35 1 2.2490 -1.6317 1.1526 36 1 3.2469 -2.3964 4.2424 37 1 2.1798 1.0133 -2.5280 38 1 0.5628 0.2648 -2.4777 39 1 0.8628 -1.6834 -6.0996 40 1 1.2867 -2.9709 -8.1473 41 1 7.2757 -0.5822 -7.1640 42 1 0.4199 -2.1515 -3.8305 43 1 1.9636 -2.6421 -4.5745 44 1 3.0067 -2.9030 -2.3788 45 1 1.4727 -3.8068 -2.3681 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001485637922.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:01:17 Heat of formation + Delta-G solvation = 42.922766 kcal Electronic energy + Delta-G solvation = -30328.782915 eV Core-core repulsion = 26155.568541 eV Total energy + Delta-G solvation = -4173.214374 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -42.82578 -40.44858 -38.79793 -38.14736 -35.51768 -34.57664 -34.06650 -32.51838 -31.76925 -30.21323 -30.16795 -28.46339 -27.35754 -25.27936 -24.52452 -23.74438 -23.33000 -22.66496 -21.86556 -20.18912 -19.59893 -18.51358 -18.15147 -17.41800 -17.11642 -16.53861 -16.12180 -15.94017 -15.64855 -15.56743 -15.07617 -14.94246 -14.50305 -14.36358 -14.25724 -13.88889 -13.41066 -13.29678 -13.13859 -12.90612 -12.78492 -12.49109 -12.19232 -11.98053 -11.51544 -11.33309 -11.28385 -11.09730 -10.80322 -10.69422 -10.52355 -10.33532 -10.21270 -9.92647 -9.80301 -9.61979 -9.52899 -9.26583 -8.95726 -8.85045 -8.47523 -6.89213 -5.69361 -2.98002 0.07347 0.71648 2.07880 2.35256 2.54954 2.73951 3.39954 3.48830 3.52932 3.53971 3.63977 3.92788 4.00272 4.12315 4.33148 4.54774 4.61371 4.68573 4.76115 4.89591 4.93017 5.10398 5.18380 5.27853 5.35435 5.40985 5.46278 5.59753 5.63437 5.70559 5.74611 5.84783 6.01780 6.02642 6.06809 6.23644 6.38154 6.50496 6.62550 6.68860 6.86319 7.17772 7.21444 7.32035 7.37857 7.50540 7.75311 7.99286 8.48904 9.60601 10.18436 10.55079 11.53086 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.019081 B = 0.002458 C = 0.002356 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1467.093961 B =11389.607792 C =11881.456762 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.185 3.815 3 H 0.060 0.940 4 N -0.719 5.719 5 C -0.238 4.238 6 H 0.070 0.930 7 C -0.013 4.013 8 N -0.932 5.932 9 Si 0.906 3.094 10 H -0.286 1.286 11 H -0.292 1.292 12 H -0.286 1.286 13 C 0.076 3.924 14 H 0.064 0.936 15 C 0.084 3.916 16 N -0.606 5.606 17 C 0.562 3.438 18 O -0.509 6.509 19 C -0.025 4.025 20 C -0.153 4.153 21 C 0.135 3.865 22 N -0.470 5.470 23 C 0.236 3.764 24 N -0.589 5.589 25 H 0.431 0.569 26 C 0.282 3.718 27 N -0.473 5.473 28 C 0.048 3.952 29 C 0.066 3.934 30 C 0.046 3.954 31 O -0.357 6.357 32 H 0.057 0.943 33 H 0.052 0.948 34 H 0.035 0.965 35 H 0.389 0.611 36 H 0.255 0.745 37 H 0.101 0.899 38 H 0.084 0.916 39 H 0.153 0.847 40 H 0.175 0.825 41 H 0.229 0.771 42 H 0.082 0.918 43 H 0.091 0.909 44 H 0.053 0.947 45 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.368 -3.682 -28.147 28.389 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.074 3.926 3 H 0.077 0.923 4 N -0.361 5.361 5 C -0.370 4.370 6 H 0.088 0.912 7 C -0.209 4.209 8 N -0.580 5.580 9 Si 0.737 3.263 10 H -0.213 1.213 11 H -0.218 1.218 12 H -0.213 1.213 13 C 0.016 3.984 14 H 0.082 0.918 15 C -0.038 4.038 16 N -0.341 5.341 17 C 0.349 3.651 18 O -0.384 6.384 19 C -0.038 4.038 20 C -0.176 4.176 21 C -0.031 4.031 22 N -0.183 5.183 23 C -0.002 4.002 24 N -0.203 5.203 25 H 0.271 0.729 26 C -0.005 4.005 27 N -0.191 5.191 28 C -0.075 4.075 29 C -0.057 4.057 30 C -0.032 4.032 31 O -0.275 6.275 32 H 0.076 0.924 33 H 0.071 0.929 34 H 0.053 0.947 35 H 0.223 0.777 36 H 0.064 0.936 37 H 0.120 0.880 38 H 0.102 0.898 39 H 0.171 0.829 40 H 0.192 0.808 41 H 0.245 0.755 42 H 0.100 0.900 43 H 0.110 0.890 44 H 0.071 0.929 45 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 0.832 -2.919 -27.802 27.967 hybrid contribution 0.381 -0.128 0.289 0.495 sum 1.213 -3.047 -27.513 27.708 Atomic orbital electron populations 1.22413 0.98643 1.01617 0.99535 1.20194 0.92814 0.94634 0.84926 0.92261 1.42348 1.77869 1.10958 1.04877 1.19209 1.36583 0.93821 0.87347 0.91215 1.24735 1.02244 0.95961 0.98002 1.69670 1.50822 1.08624 1.28871 0.86279 0.77755 0.78587 0.83633 1.21309 1.21774 1.21304 1.22981 0.97733 0.83000 0.94637 0.91770 1.22544 1.01955 0.95883 0.83422 1.48068 1.54279 1.13002 1.18706 1.17971 0.78275 0.86318 0.82557 1.90833 1.47940 1.19098 1.80485 1.19559 0.91262 0.97040 0.95898 1.22259 0.99770 0.97754 0.97789 1.22527 0.92229 0.96223 0.92150 1.66214 0.98601 1.20300 1.33191 1.18946 0.86927 0.99626 0.94682 1.42929 1.06913 1.43762 1.26722 0.72900 1.25733 1.00117 0.89973 0.84674 1.70306 0.99064 1.23909 1.25862 1.19209 0.93389 0.99533 0.95396 1.22818 1.00679 0.81823 1.00357 1.22977 0.99559 0.95168 0.85489 1.88099 1.67462 1.25883 1.46061 0.92422 0.92907 0.94656 0.77681 0.93551 0.88022 0.89806 0.82931 0.80840 0.75479 0.89972 0.89043 0.92899 0.87788 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.99 9.06 37.15 0.34 -2.65 16 2 C 0.19 3.77 2.77 -67.94 -0.19 3.58 16 3 H 0.06 1.21 8.08 -51.93 -0.42 0.79 16 4 N -0.72 -18.52 5.10 -53.43 -0.27 -18.79 16 5 C -0.24 -6.73 9.93 -15.06 -0.15 -6.88 16 6 H 0.07 1.90 7.83 -52.49 -0.41 1.49 16 7 C -0.01 -0.39 5.50 -17.43 -0.10 -0.49 16 8 N -0.93 -28.68 13.06 55.49 0.72 -27.95 16 9 Si 0.91 22.77 29.55 -169.99 -5.02 17.75 16 10 H -0.29 -7.07 7.11 56.52 0.40 -6.66 16 11 H -0.29 -7.38 7.11 56.52 0.40 -6.98 16 12 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 13 C 0.08 1.34 2.61 -26.58 -0.07 1.27 16 14 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 15 C 0.08 1.26 5.84 -3.53 -0.02 1.24 16 16 N -0.61 -8.20 3.01 -173.16 -0.52 -8.72 16 17 C 0.56 8.49 7.33 -12.37 -0.09 8.40 16 18 O -0.51 -9.64 16.48 5.32 0.09 -9.55 16 19 C -0.02 -0.31 4.99 -104.44 -0.52 -0.83 16 20 C -0.15 -1.27 7.62 -39.02 -0.30 -1.57 16 21 C 0.13 0.99 11.14 -17.56 -0.20 0.79 16 22 N -0.47 -4.53 10.35 -12.30 -0.13 -4.65 16 23 C 0.24 2.46 8.46 -155.64 -1.32 1.14 16 24 N -0.59 -4.01 6.23 -13.21 -0.08 -4.09 16 25 H 0.43 1.33 8.96 -40.82 -0.37 0.97 16 26 C 0.28 2.12 12.97 -89.68 -1.16 0.96 16 27 N -0.47 -6.20 11.23 -11.88 -0.13 -6.34 16 28 C 0.05 0.62 6.94 -84.61 -0.59 0.04 16 29 C 0.07 0.69 5.29 -3.32 -0.02 0.67 16 30 C 0.05 0.59 7.00 37.53 0.26 0.85 16 31 O -0.36 -6.09 9.24 -35.23 -0.33 -6.42 16 32 H 0.06 1.11 7.56 -51.93 -0.39 0.72 16 33 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 34 H 0.03 0.53 6.42 -51.93 -0.33 0.20 16 35 H 0.39 10.81 7.59 -40.82 -0.31 10.50 16 36 H 0.25 7.60 8.31 -40.82 -0.34 7.26 16 37 H 0.10 1.63 7.06 -51.93 -0.37 1.27 16 38 H 0.08 1.15 6.27 -51.93 -0.33 0.82 16 39 H 0.15 0.88 7.10 -52.49 -0.37 0.51 16 40 H 0.17 0.60 8.06 -52.49 -0.42 0.17 16 41 H 0.23 0.51 8.06 -52.49 -0.42 0.08 16 42 H 0.08 0.70 8.14 -51.93 -0.42 0.27 16 43 H 0.09 0.78 5.20 -51.93 -0.27 0.51 16 44 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 45 H 0.10 1.07 8.14 -51.92 -0.42 0.64 16 LS Contribution 370.23 15.07 5.58 5.58 Total: -1.00 -39.18 370.23 -9.87 -49.05 By element: Atomic # 1 Polarization: 13.29 SS G_CDS: -5.66 Total: 7.63 kcal Atomic # 6 Polarization: 10.62 SS G_CDS: -4.11 Total: 6.51 kcal Atomic # 7 Polarization: -70.14 SS G_CDS: -0.41 Total: -70.55 kcal Atomic # 8 Polarization: -15.73 SS G_CDS: -0.24 Total: -15.97 kcal Atomic # 14 Polarization: 22.77 SS G_CDS: -5.02 Total: 17.75 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -39.18 -9.87 -49.05 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001485637922.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.977 kcal (2) G-P(sol) polarization free energy of solvation -39.185 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.793 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.870 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.055 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.923 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds