Wall clock time and date at job start Wed Apr 1 2020 04:01:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09003 * 109.47501 * 2 1 4 4 N 1.46500 * 109.47412 * 119.99683 * 2 1 3 5 5 C 1.36941 * 120.00164 * 275.00162 * 4 2 1 6 6 H 1.08002 * 119.99754 * 359.97438 * 5 4 2 7 7 C 1.38814 * 119.99835 * 179.97438 * 5 4 2 8 8 N 1.31623 * 120.00203 * 359.97438 * 7 5 4 9 9 Si 1.86801 * 119.99850 * 179.97438 * 7 5 4 10 10 H 1.48503 * 109.47040 * 60.00207 * 9 7 5 11 11 H 1.48492 * 109.46994 * 179.97438 * 9 7 5 12 12 H 1.48494 * 109.47193 * 300.00021 * 9 7 5 13 13 C 1.52996 * 109.47225 * 240.00025 * 2 1 3 14 14 H 1.09004 * 109.51572 * 185.10520 * 13 2 1 15 15 C 1.53295 * 109.51359 * 65.00087 * 13 2 1 16 16 N 1.47161 * 108.38088 * 187.77746 * 15 13 2 17 17 C 1.34780 * 120.97465 * 230.50782 * 16 15 13 18 18 O 1.21557 * 120.00606 * 5.57523 * 17 16 15 19 19 C 1.47763 * 119.99539 * 185.57828 * 17 16 15 20 20 C 1.39642 * 121.07640 * 44.82435 * 19 17 16 21 21 C 1.38338 * 119.37452 * 180.02562 * 20 19 17 22 22 N 1.31727 * 121.54976 * 0.03640 * 21 20 19 23 23 C 1.32117 * 121.94642 * 0.02562 * 22 21 20 24 24 N 1.37943 * 133.80864 * 180.02562 * 23 22 21 25 25 H 0.97001 * 126.35420 * 0.02562 * 24 23 22 26 26 C 1.35986 * 107.28721 * 179.97438 * 24 23 22 27 27 N 1.30286 * 110.05757 * 359.77782 * 26 24 23 28 28 C 1.34652 * 109.66440 * 0.35942 * 27 26 24 29 29 C 1.47149 * 118.03725 * 50.78849 * 16 15 13 30 30 C 1.53710 * 108.15708 * 309.15383 * 29 16 15 31 31 O 1.42958 * 109.15354 * 52.54316 * 30 29 16 32 32 H 1.08998 * 109.47176 * 180.02562 * 1 2 3 33 33 H 1.09002 * 109.47127 * 299.99994 * 1 2 3 34 34 H 1.09001 * 109.47291 * 59.99806 * 1 2 3 35 35 H 0.97001 * 119.99818 * 94.99660 * 4 2 1 36 36 H 0.96995 * 120.00077 * 179.97438 * 8 7 5 37 37 H 1.08996 * 109.68177 * 68.05186 * 15 13 2 38 38 H 1.08997 * 109.67945 * 307.49714 * 15 13 2 39 39 H 1.07993 * 120.30984 * 0.07650 * 20 19 17 40 40 H 1.07997 * 119.22268 * 180.02562 * 21 20 19 41 41 H 1.07995 * 124.97095 * 180.02562 * 26 24 23 42 42 H 1.08999 * 109.68404 * 68.93515 * 29 16 15 43 43 H 1.08999 * 109.67897 * 189.48872 * 29 16 15 44 44 H 1.09006 * 109.65839 * 292.56813 * 30 29 16 45 45 H 1.09008 * 109.48553 * 172.40563 * 30 29 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6905 1.1962 5 6 2.1491 -0.0073 2.3758 6 1 1.8926 1.0406 2.4241 7 6 2.6114 -0.6618 3.5093 8 7 2.9236 -1.9392 3.4505 9 14 2.7905 0.2702 5.1182 10 1 1.4685 0.8080 5.5285 11 1 3.2982 -0.6484 6.1685 12 1 3.7465 1.3919 4.9367 13 6 2.0400 -0.7212 -1.2492 14 1 3.1262 -0.8015 -1.2054 15 6 1.6349 0.0697 -2.4983 16 7 1.9698 -0.7336 -3.6850 17 6 2.6764 -0.2049 -4.7037 18 8 3.1338 0.9173 -4.6084 19 6 2.8951 -0.9895 -5.9366 20 6 1.8514 -1.6996 -6.5337 21 6 2.0958 -2.4230 -7.6873 22 7 3.2920 -2.4595 -8.2377 23 6 4.3197 -1.8103 -7.7201 24 7 5.6449 -1.6783 -8.0795 25 1 6.0751 -2.0831 -8.8490 26 6 6.2360 -0.8743 -7.1557 27 7 5.3634 -0.5039 -6.2620 28 6 4.1649 -1.0478 -6.5462 29 6 1.5049 -2.1290 -3.7293 30 6 1.9209 -2.8143 -2.4178 31 8 1.4658 -2.0290 -1.3134 32 1 -0.3633 -1.0276 0.0005 33 1 -0.3633 0.5138 0.8900 34 1 -0.3634 0.5139 -0.8900 35 1 2.2490 -1.6317 1.1526 36 1 3.2469 -2.3964 4.2424 37 1 2.1798 1.0133 -2.5280 38 1 0.5628 0.2648 -2.4777 39 1 0.8628 -1.6834 -6.0996 40 1 1.2867 -2.9709 -8.1473 41 1 7.2757 -0.5822 -7.1640 42 1 0.4199 -2.1515 -3.8305 43 1 1.9636 -2.6421 -4.5745 44 1 3.0067 -2.9030 -2.3788 45 1 1.4727 -3.8068 -2.3681 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001485637922.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:01:12 Heat of formation + Delta-G solvation = 13.269732 kcal Electronic energy + Delta-G solvation = -30330.068767 eV Core-core repulsion = 26155.568541 eV Total energy + Delta-G solvation = -4174.500226 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 3.81 seconds Orbital eigenvalues (eV) -43.49366 -41.55363 -39.80731 -39.11255 -37.13229 -35.85271 -34.83506 -34.29326 -32.66878 -31.70329 -30.83785 -29.96887 -28.66327 -26.59654 -25.75358 -24.97710 -24.26850 -23.71540 -22.78872 -21.32827 -20.89967 -19.45306 -19.21340 -18.83580 -18.17619 -17.71917 -17.12919 -16.96846 -16.74325 -16.47905 -16.35357 -16.08468 -15.87992 -15.50244 -15.29989 -15.07317 -14.86581 -14.46868 -14.36125 -14.01193 -13.81572 -13.69830 -13.54301 -13.22105 -13.00692 -12.79789 -12.44584 -12.41499 -12.23276 -12.21700 -12.01394 -11.87108 -11.64877 -11.62344 -11.32326 -11.10195 -10.92132 -10.30761 -9.99491 -9.67940 -9.59744 -9.00141 -7.91383 -5.20206 -0.65111 0.06631 1.38909 1.47377 1.50941 1.56650 1.58065 1.67265 1.82429 2.57404 2.66731 2.76176 2.99187 3.22921 3.41874 3.48057 3.56595 3.67845 3.87568 3.92451 3.97203 4.02359 4.11913 4.18243 4.28062 4.31188 4.39097 4.48126 4.59647 4.62131 4.63936 4.76834 4.80412 4.82007 4.95489 4.98988 5.11520 5.22651 5.29044 5.46759 5.51998 5.65053 6.14096 6.15861 6.22073 6.30147 6.67755 6.77345 6.90204 7.36092 8.11720 8.36653 9.32075 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.019081 B = 0.002458 C = 0.002356 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1467.093961 B =11389.607792 C =11881.456762 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.176 3.824 3 H 0.056 0.944 4 N -0.733 5.733 5 C -0.240 4.240 6 H 0.077 0.923 7 C -0.078 4.078 8 N -0.970 5.970 9 Si 0.973 3.027 10 H -0.276 1.276 11 H -0.296 1.296 12 H -0.279 1.279 13 C 0.091 3.909 14 H 0.031 0.969 15 C 0.094 3.906 16 N -0.605 5.605 17 C 0.561 3.439 18 O -0.563 6.563 19 C -0.060 4.060 20 C -0.132 4.132 21 C 0.141 3.859 22 N -0.476 5.476 23 C 0.222 3.778 24 N -0.572 5.572 25 H 0.448 0.552 26 C 0.302 3.698 27 N -0.543 5.543 28 C 0.015 3.985 29 C 0.071 3.929 30 C 0.038 3.962 31 O -0.377 6.377 32 H 0.049 0.951 33 H 0.037 0.963 34 H 0.073 0.927 35 H 0.375 0.625 36 H 0.250 0.750 37 H 0.084 0.916 38 H 0.106 0.894 39 H 0.183 0.817 40 H 0.220 0.780 41 H 0.275 0.725 42 H 0.116 0.884 43 H 0.114 0.886 44 H 0.034 0.966 45 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.110 -4.465 -30.621 30.965 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.067 3.933 3 H 0.074 0.926 4 N -0.373 5.373 5 C -0.372 4.372 6 H 0.095 0.905 7 C -0.270 4.270 8 N -0.621 5.621 9 Si 0.802 3.198 10 H -0.202 1.202 11 H -0.222 1.222 12 H -0.206 1.206 13 C 0.032 3.968 14 H 0.049 0.951 15 C -0.029 4.029 16 N -0.338 5.338 17 C 0.349 3.651 18 O -0.441 6.441 19 C -0.073 4.073 20 C -0.154 4.154 21 C -0.025 4.025 22 N -0.189 5.189 23 C -0.016 4.016 24 N -0.188 5.188 25 H 0.292 0.708 26 C 0.015 3.985 27 N -0.263 5.263 28 C -0.108 4.108 29 C -0.050 4.050 30 C -0.039 4.039 31 O -0.295 6.295 32 H 0.068 0.932 33 H 0.056 0.944 34 H 0.092 0.908 35 H 0.207 0.793 36 H 0.059 0.941 37 H 0.103 0.897 38 H 0.124 0.876 39 H 0.200 0.800 40 H 0.237 0.763 41 H 0.290 0.710 42 H 0.134 0.866 43 H 0.132 0.868 44 H 0.052 0.948 45 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -0.662 -3.713 -30.348 30.581 hybrid contribution 0.864 0.060 0.920 1.264 sum 0.203 -3.653 -29.427 29.654 Atomic orbital electron populations 1.22201 0.96399 1.01399 1.00653 1.20428 0.94224 0.94321 0.84279 0.92595 1.42528 1.78383 1.10442 1.05991 1.19620 1.35046 0.94204 0.88299 0.90539 1.25570 1.03004 0.96910 1.01493 1.69838 1.52598 1.10244 1.29405 0.85212 0.78004 0.77240 0.79318 1.20238 1.22221 1.20571 1.22540 0.95595 0.84024 0.94688 0.95128 1.22299 1.02752 0.94869 0.82931 1.48143 1.53865 1.14079 1.17699 1.18480 0.77139 0.85913 0.83526 1.90786 1.50024 1.21526 1.81741 1.19567 0.92777 0.99262 0.95693 1.22621 0.99730 0.95668 0.97382 1.23328 0.92470 0.95332 0.91397 1.66364 0.99149 1.20087 1.33334 1.19153 0.88270 0.99794 0.94370 1.42934 1.05796 1.43119 1.26972 0.70783 1.26597 1.01001 0.87939 0.82991 1.70248 1.00398 1.26731 1.28890 1.19559 0.93753 1.00697 0.96762 1.23033 1.02723 0.79720 0.99521 1.23284 0.98862 0.96269 0.85534 1.88051 1.67447 1.25646 1.48369 0.93215 0.94418 0.90810 0.79330 0.94135 0.89739 0.87608 0.79960 0.76326 0.71010 0.86576 0.86801 0.94789 0.84745 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.29 9.06 71.98 0.65 -4.64 16 2 C 0.18 7.30 2.77 44.99 0.12 7.43 16 3 H 0.06 2.34 8.08 -2.39 -0.02 2.32 16 4 N -0.73 -38.90 5.10 -322.95 -1.65 -40.55 16 5 C -0.24 -13.79 9.93 84.03 0.83 -12.95 16 6 H 0.08 4.19 7.83 -2.91 -0.02 4.17 16 7 C -0.08 -4.61 5.50 84.86 0.47 -4.14 16 8 N -0.97 -61.38 13.06 21.65 0.28 -61.10 16 9 Si 0.97 47.53 29.55 68.60 2.03 49.55 16 10 H -0.28 -12.92 7.11 99.48 0.71 -12.21 16 11 H -0.30 -14.53 7.11 99.48 0.71 -13.82 16 12 H -0.28 -13.20 7.11 99.48 0.71 -12.49 16 13 C 0.09 3.29 2.61 30.69 0.08 3.37 16 14 H 0.03 1.29 8.14 -2.38 -0.02 1.27 16 15 C 0.09 2.81 5.84 86.35 0.50 3.32 16 16 N -0.60 -15.94 3.01 -820.04 -2.47 -18.41 16 17 C 0.56 17.17 7.33 86.76 0.64 17.80 16 18 O -0.56 -22.46 16.48 -3.89 -0.06 -22.52 16 19 C -0.06 -1.45 4.99 -19.75 -0.10 -1.55 16 20 C -0.13 -1.79 7.62 22.63 0.17 -1.62 16 21 C 0.14 1.54 11.14 84.73 0.94 2.48 16 22 N -0.48 -7.94 10.35 -192.83 -2.00 -9.94 16 23 C 0.22 4.35 8.46 133.92 1.13 5.48 16 24 N -0.57 -6.92 6.23 -195.71 -1.22 -8.14 16 25 H 0.45 1.82 8.96 -92.71 -0.83 0.99 16 26 C 0.30 4.25 12.97 180.02 2.34 6.58 16 27 N -0.54 -14.61 11.23 -191.50 -2.15 -16.77 16 28 C 0.02 0.40 6.94 40.02 0.28 0.68 16 29 C 0.07 1.30 5.29 86.49 0.46 1.75 16 30 C 0.04 0.92 7.00 72.22 0.51 1.42 16 31 O -0.38 -12.76 9.24 -148.98 -1.38 -14.14 16 32 H 0.05 1.87 7.56 -2.39 -0.02 1.85 16 33 H 0.04 1.45 8.14 -2.39 -0.02 1.43 16 34 H 0.07 2.07 6.42 -2.39 -0.02 2.05 16 35 H 0.37 21.68 7.59 -92.71 -0.70 20.98 16 36 H 0.25 15.33 8.31 -92.71 -0.77 14.56 16 37 H 0.08 2.83 7.06 -2.39 -0.02 2.81 16 38 H 0.11 2.67 6.27 -2.39 -0.01 2.66 16 39 H 0.18 1.25 7.10 -2.91 -0.02 1.23 16 40 H 0.22 0.27 8.06 -2.91 -0.02 0.25 16 41 H 0.27 0.63 8.06 -2.91 -0.02 0.61 16 42 H 0.12 1.42 8.14 -2.39 -0.02 1.40 16 43 H 0.11 1.60 5.20 -2.39 -0.01 1.58 16 44 H 0.03 0.94 8.14 -2.38 -0.02 0.93 16 45 H 0.13 2.43 8.14 -2.38 -0.02 2.41 16 Total: -1.00 -91.59 370.23 -0.06 -91.65 By element: Atomic # 1 Polarization: 25.43 SS G_CDS: -0.47 Total: 24.96 kcal Atomic # 6 Polarization: 16.38 SS G_CDS: 9.02 Total: 25.41 kcal Atomic # 7 Polarization: -145.70 SS G_CDS: -9.20 Total: -154.90 kcal Atomic # 8 Polarization: -35.22 SS G_CDS: -1.44 Total: -36.66 kcal Atomic # 14 Polarization: 47.53 SS G_CDS: 2.03 Total: 49.55 kcal Total: -91.59 -0.06 -91.65 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001485637922.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.917 kcal (2) G-P(sol) polarization free energy of solvation -91.587 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.330 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.061 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.647 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.270 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.82 seconds