Wall clock time and date at job start Wed Apr 1 2020 04:02:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09001 * 109.46553 * 2 1 4 4 N 1.46496 * 109.47207 * 240.00020 * 2 1 3 5 5 C 1.36936 * 120.00028 * 85.00053 * 4 2 1 6 6 H 1.08002 * 120.00064 * 359.97438 * 5 4 2 7 7 C 1.38815 * 120.00061 * 179.97438 * 5 4 2 8 8 N 1.31625 * 119.99752 * 0.02562 * 7 5 4 9 9 Si 1.86795 * 120.00295 * 179.97438 * 7 5 4 10 10 H 1.48497 * 109.47162 * 89.99983 * 9 7 5 11 11 H 1.48498 * 109.47632 * 210.00204 * 9 7 5 12 12 H 1.48501 * 109.46992 * 330.00344 * 9 7 5 13 13 C 1.52998 * 109.46961 * 120.00010 * 2 1 3 14 14 H 1.09005 * 109.51540 * 299.89889 * 13 2 1 15 15 C 1.53295 * 109.55316 * 179.77508 * 13 2 1 16 16 N 1.47151 * 108.38295 * 187.74655 * 15 13 2 17 17 C 1.34780 * 120.98310 * 230.55391 * 16 15 13 18 18 O 1.21754 * 119.99831 * 0.59797 * 17 16 15 19 19 C 1.46188 * 119.99969 * 180.60000 * 17 16 15 20 20 C 1.38728 * 126.76472 * 27.23304 * 19 17 16 21 21 N 1.32277 * 108.17770 * 179.97438 * 20 19 17 22 22 C 1.33132 * 109.71800 * 359.97438 * 21 20 19 23 23 C 1.40630 * 132.29533 * 180.02562 * 22 21 20 24 24 C 1.36311 * 119.22396 * 179.29525 * 23 22 21 25 25 C 1.39869 * 120.11986 * 0.59848 * 24 23 22 26 26 N 1.30807 * 120.77937 * 359.60077 * 25 24 23 27 27 N 1.36653 * 108.62784 * 359.77105 * 22 21 20 28 28 C 1.47150 * 118.03611 * 50.53702 * 16 15 13 29 29 C 1.53298 * 108.38385 * 309.45970 * 28 16 15 30 30 O 1.42958 * 109.51327 * 59.99765 * 13 2 1 31 31 H 1.09005 * 109.47393 * 300.00043 * 1 2 3 32 32 H 1.09000 * 109.46972 * 60.00014 * 1 2 3 33 33 H 1.09005 * 109.47194 * 179.97438 * 1 2 3 34 34 H 0.97002 * 119.99767 * 265.00034 * 4 2 1 35 35 H 0.96994 * 119.99661 * 179.97438 * 8 7 5 36 36 H 1.09002 * 109.68117 * 307.46888 * 15 13 2 37 37 H 1.08997 * 109.68282 * 68.02795 * 15 13 2 38 38 H 1.07994 * 125.91034 * 359.96001 * 20 19 17 39 39 H 1.08000 * 120.37979 * 359.97283 * 23 22 21 40 40 H 1.07997 * 119.93996 * 180.22383 * 24 23 22 41 41 H 1.07997 * 119.61193 * 179.61588 * 25 24 23 42 42 H 1.08994 * 109.68610 * 69.18722 * 28 16 15 43 43 H 1.09005 * 109.68027 * 189.74095 * 28 16 15 44 44 H 1.09003 * 109.51287 * 292.37921 * 29 28 16 45 45 H 1.09000 * 109.51449 * 172.22796 * 29 28 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 7 2.0183 -0.6906 -1.1961 5 6 2.1491 -0.0075 -2.3757 6 1 1.8919 1.0403 -2.4243 7 6 2.6124 -0.6617 -3.5090 8 7 2.9254 -1.9388 -3.4498 9 14 2.7901 0.2699 -5.1182 10 1 4.1519 0.8560 -5.2031 11 1 2.5805 -0.6617 -6.2554 12 1 1.7793 1.3563 -5.1755 13 6 2.0399 -0.7212 1.2492 14 1 1.6785 -0.2069 2.1397 15 6 3.5729 -0.7273 1.2483 16 7 4.0342 -1.5825 2.3534 17 6 4.9520 -1.1407 3.2360 18 8 5.4040 -0.0150 3.1322 19 6 5.4047 -2.0132 4.3181 20 6 5.4336 -3.4002 4.3094 21 7 5.9091 -3.8103 5.4737 22 6 6.1914 -2.7584 6.2393 23 6 6.7107 -2.6478 7.5415 24 6 6.9115 -1.4096 8.0750 25 6 6.5910 -0.2664 7.3356 26 7 6.1042 -0.3665 6.1256 27 7 5.8929 -1.6202 5.5445 28 6 3.4637 -2.9342 2.4665 29 6 1.9361 -2.8206 2.4081 30 8 1.5638 -2.0692 1.2502 31 1 -0.3634 0.5139 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 -0.3634 -1.0277 -0.0005 34 1 2.2490 -1.6318 -1.1525 35 1 3.2487 -2.3960 -4.2418 36 1 3.9379 -1.1232 0.3006 37 1 3.9441 0.2877 1.3901 38 1 5.1217 -4.0351 3.4934 39 1 6.9577 -3.5335 8.1080 40 1 7.3131 -1.3112 9.0727 41 1 6.7477 0.7105 7.7686 42 1 3.8177 -3.5523 1.6415 43 1 3.7626 -3.3806 3.4149 44 1 1.5742 -2.3139 3.3028 45 1 1.4987 -3.8174 2.3513 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001485642645.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:02:09 Heat of formation + Delta-G solvation = 86.943015 kcal Electronic energy + Delta-G solvation = -30503.708486 eV Core-core repulsion = 26332.402973 eV Total energy + Delta-G solvation = -4171.305513 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -42.97570 -40.18008 -38.52716 -38.08449 -35.52561 -34.56737 -34.03100 -32.32596 -31.67481 -30.69857 -29.74667 -28.38368 -27.65844 -25.45787 -24.30867 -23.89556 -23.53023 -22.79422 -21.82521 -20.09718 -19.67567 -18.10076 -17.91772 -17.45977 -17.26844 -16.63294 -16.23931 -16.06142 -15.63779 -15.32684 -15.10724 -14.61951 -14.31242 -14.09582 -14.07307 -13.94695 -13.40898 -13.35149 -13.16007 -13.09051 -12.90490 -12.31489 -11.89863 -11.72684 -11.63217 -11.56336 -11.35233 -11.16494 -10.82145 -10.75495 -10.51371 -10.43381 -10.25986 -10.05153 -9.92417 -9.86250 -9.70737 -9.54913 -8.89640 -8.67611 -8.34081 -6.89665 -5.71036 -2.99310 -0.06424 0.48418 1.31022 1.94347 2.78548 2.83380 3.06993 3.47453 3.52896 3.54052 3.55045 3.69662 4.00202 4.03282 4.34362 4.37133 4.63449 4.66361 4.74941 4.84147 4.99162 5.08428 5.16195 5.23810 5.27217 5.33456 5.40868 5.50845 5.63944 5.72167 5.74903 5.79846 5.86012 5.94439 6.02592 6.23512 6.34769 6.43175 6.55150 6.69021 6.80628 7.04794 7.16009 7.17780 7.30912 7.48940 7.75368 8.08397 8.47368 9.59706 10.16468 10.53962 11.51220 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.018878 B = 0.002561 C = 0.002518 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1482.881818 B =10930.067436 C =11115.281106 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.183 3.817 3 H 0.060 0.940 4 N -0.717 5.717 5 C -0.238 4.238 6 H 0.070 0.930 7 C -0.012 4.012 8 N -0.930 5.930 9 Si 0.904 3.096 10 H -0.291 1.291 11 H -0.292 1.292 12 H -0.283 1.283 13 C 0.078 3.922 14 H 0.055 0.945 15 C 0.090 3.910 16 N -0.597 5.597 17 C 0.590 3.410 18 O -0.523 6.523 19 C -0.046 4.046 20 C 0.065 3.935 21 N -0.460 5.460 22 C 0.175 3.825 23 C -0.008 4.008 24 C -0.172 4.172 25 C 0.126 3.874 26 N -0.238 5.238 27 N -0.238 5.238 28 C 0.046 3.954 29 C 0.049 3.951 30 O -0.357 6.357 31 H 0.032 0.968 32 H 0.054 0.946 33 H 0.056 0.944 34 H 0.390 0.610 35 H 0.254 0.746 36 H 0.102 0.898 37 H 0.098 0.902 38 H 0.210 0.790 39 H 0.166 0.834 40 H 0.160 0.840 41 H 0.203 0.797 42 H 0.090 0.910 43 H 0.104 0.896 44 H 0.048 0.952 45 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.287 -2.967 26.774 27.452 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.072 3.928 3 H 0.078 0.922 4 N -0.359 5.359 5 C -0.369 4.369 6 H 0.088 0.912 7 C -0.208 4.208 8 N -0.578 5.578 9 Si 0.736 3.264 10 H -0.218 1.218 11 H -0.219 1.219 12 H -0.208 1.208 13 C 0.019 3.981 14 H 0.073 0.927 15 C -0.032 4.032 16 N -0.331 5.331 17 C 0.377 3.623 18 O -0.399 6.399 19 C -0.168 4.168 20 C -0.095 4.095 21 N -0.180 5.180 22 C -0.069 4.069 23 C -0.036 4.036 24 C -0.198 4.198 25 C -0.067 4.067 26 N -0.048 5.048 27 N -0.007 5.007 28 C -0.077 4.077 29 C -0.029 4.029 30 O -0.275 6.275 31 H 0.051 0.949 32 H 0.073 0.927 33 H 0.075 0.925 34 H 0.225 0.775 35 H 0.064 0.936 36 H 0.120 0.880 37 H 0.116 0.884 38 H 0.226 0.774 39 H 0.183 0.817 40 H 0.178 0.822 41 H 0.219 0.781 42 H 0.108 0.892 43 H 0.121 0.879 44 H 0.066 0.934 45 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 5.232 -2.406 25.883 26.516 hybrid contribution 0.519 0.434 -0.271 0.729 sum 5.750 -1.972 25.612 26.324 Atomic orbital electron populations 1.22350 0.98490 1.01584 0.99618 1.20253 0.92780 0.94647 0.85124 0.92208 1.42381 1.77659 1.11012 1.04883 1.19238 1.36462 0.93811 0.87427 0.91235 1.24714 1.02265 0.95924 0.97923 1.69672 1.50810 1.08559 1.28778 0.86230 0.77737 0.78589 0.83865 1.21818 1.21885 1.20849 1.22928 0.92000 0.83502 0.99664 0.92749 1.22520 0.95042 0.96453 0.89148 1.47874 1.40415 1.16037 1.28743 1.16474 0.79754 0.85559 0.80540 1.90882 1.56125 1.19176 1.73752 1.20944 1.13414 0.94793 0.87611 1.23643 0.99288 0.90053 0.96552 1.70449 1.17280 1.26772 1.03498 1.21302 1.06685 0.82575 0.96361 1.20641 0.93174 0.99934 0.89837 1.21596 1.03711 0.91541 1.02927 1.24325 0.91521 1.01581 0.89225 1.76150 1.16751 0.99433 1.12424 1.46586 1.38149 1.04412 1.11592 1.23194 0.95976 0.84291 1.04265 1.22888 0.92756 0.97705 0.89537 1.88112 1.75120 1.23637 1.40634 0.94899 0.92734 0.92508 0.77487 0.93613 0.87976 0.88390 0.77415 0.81680 0.82223 0.78056 0.89158 0.87852 0.93385 0.87659 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.98 9.35 37.16 0.35 -2.64 16 2 C 0.18 3.64 2.74 -67.93 -0.19 3.46 16 3 H 0.06 1.19 8.08 -51.93 -0.42 0.77 16 4 N -0.72 -17.64 4.29 -53.43 -0.23 -17.87 16 5 C -0.24 -6.53 9.93 -15.06 -0.15 -6.68 16 6 H 0.07 1.86 7.83 -52.49 -0.41 1.45 16 7 C -0.01 -0.35 5.50 -17.43 -0.10 -0.44 16 8 N -0.93 -27.93 13.06 55.49 0.72 -27.21 16 9 Si 0.90 22.53 29.55 -169.99 -5.02 17.51 16 10 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 11 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16 12 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 13 C 0.08 1.35 2.53 -26.58 -0.07 1.28 16 14 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 15 C 0.09 1.59 5.87 -3.53 -0.02 1.57 16 16 N -0.60 -9.20 3.02 -173.99 -0.53 -9.73 16 17 C 0.59 9.91 7.66 -13.07 -0.10 9.81 16 18 O -0.52 -10.63 16.58 5.14 0.09 -10.55 16 19 C -0.05 -0.67 6.73 -81.85 -0.55 -1.22 16 20 C 0.07 0.77 9.56 -17.18 -0.16 0.61 16 21 N -0.46 -5.63 11.25 -12.23 -0.14 -5.77 16 22 C 0.18 2.01 7.85 -156.06 -1.23 0.79 16 23 C -0.01 -0.06 10.11 -39.37 -0.40 -0.45 16 24 C -0.17 -0.80 10.03 -39.67 -0.40 -1.19 16 25 C 0.13 0.85 11.30 -17.38 -0.20 0.65 16 26 N -0.24 -2.97 11.94 30.62 0.37 -2.60 16 27 N -0.24 -3.26 4.05 -8.68 -0.04 -3.30 16 28 C 0.05 0.54 5.47 -3.53 -0.02 0.52 16 29 C 0.05 0.61 6.99 37.31 0.26 0.87 16 30 O -0.36 -6.03 9.22 -35.23 -0.32 -6.36 16 31 H 0.03 0.52 8.14 -51.93 -0.42 0.09 16 32 H 0.05 1.07 8.14 -51.93 -0.42 0.65 16 33 H 0.06 1.10 7.68 -51.93 -0.40 0.70 16 34 H 0.39 10.33 7.20 -40.82 -0.29 10.04 16 35 H 0.25 7.43 8.31 -40.82 -0.34 7.09 16 36 H 0.10 2.09 7.26 -51.93 -0.38 1.72 16 37 H 0.10 1.83 7.07 -51.93 -0.37 1.46 16 38 H 0.21 1.84 5.93 -52.49 -0.31 1.53 16 39 H 0.17 0.62 8.06 -52.49 -0.42 0.20 16 40 H 0.16 0.07 8.06 -52.49 -0.42 -0.35 16 41 H 0.20 0.48 8.06 -52.49 -0.42 0.05 16 42 H 0.09 1.05 8.14 -51.93 -0.42 0.63 16 43 H 0.10 0.99 3.77 -51.93 -0.20 0.80 16 44 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 45 H 0.11 1.05 8.14 -51.93 -0.42 0.63 16 LS Contribution 372.04 15.07 5.61 5.61 Total: -1.00 -37.38 372.04 -8.17 -45.56 By element: Atomic # 1 Polarization: 13.49 SS G_CDS: -5.71 Total: 7.77 kcal Atomic # 6 Polarization: 9.90 SS G_CDS: -2.96 Total: 6.94 kcal Atomic # 7 Polarization: -66.64 SS G_CDS: 0.16 Total: -66.47 kcal Atomic # 8 Polarization: -16.67 SS G_CDS: -0.24 Total: -16.91 kcal Atomic # 14 Polarization: 22.53 SS G_CDS: -5.02 Total: 17.51 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -37.38 -8.17 -45.56 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001485642645.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.499 kcal (2) G-P(sol) polarization free energy of solvation -37.384 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 95.115 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.172 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.556 kcal (6) G-S(sol) free energy of system = (1) + (5) 86.943 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds