Wall clock time and date at job start Wed Apr 1 2020 04:02:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09001 * 109.46553 * 2 1 4 4 N 1.46496 * 109.47207 * 240.00020 * 2 1 3 5 5 C 1.36936 * 120.00028 * 85.00053 * 4 2 1 6 6 H 1.08002 * 120.00064 * 359.97438 * 5 4 2 7 7 C 1.38815 * 120.00061 * 179.97438 * 5 4 2 8 8 N 1.31625 * 119.99752 * 0.02562 * 7 5 4 9 9 Si 1.86795 * 120.00295 * 179.97438 * 7 5 4 10 10 H 1.48497 * 109.47162 * 89.99983 * 9 7 5 11 11 H 1.48498 * 109.47632 * 210.00204 * 9 7 5 12 12 H 1.48501 * 109.46992 * 330.00344 * 9 7 5 13 13 C 1.52998 * 109.46961 * 120.00010 * 2 1 3 14 14 H 1.09005 * 109.51540 * 299.89889 * 13 2 1 15 15 C 1.53295 * 109.55316 * 179.77508 * 13 2 1 16 16 N 1.47151 * 108.38295 * 187.74655 * 15 13 2 17 17 C 1.34780 * 120.98310 * 230.55391 * 16 15 13 18 18 O 1.21754 * 119.99831 * 0.59797 * 17 16 15 19 19 C 1.46188 * 119.99969 * 180.60000 * 17 16 15 20 20 C 1.38728 * 126.76472 * 27.23304 * 19 17 16 21 21 N 1.32277 * 108.17770 * 179.97438 * 20 19 17 22 22 C 1.33132 * 109.71800 * 359.97438 * 21 20 19 23 23 C 1.40630 * 132.29533 * 180.02562 * 22 21 20 24 24 C 1.36311 * 119.22396 * 179.29525 * 23 22 21 25 25 C 1.39869 * 120.11986 * 0.59848 * 24 23 22 26 26 N 1.30807 * 120.77937 * 359.60077 * 25 24 23 27 27 N 1.36653 * 108.62784 * 359.77105 * 22 21 20 28 28 C 1.47150 * 118.03611 * 50.53702 * 16 15 13 29 29 C 1.53298 * 108.38385 * 309.45970 * 28 16 15 30 30 O 1.42958 * 109.51327 * 59.99765 * 13 2 1 31 31 H 1.09005 * 109.47393 * 300.00043 * 1 2 3 32 32 H 1.09000 * 109.46972 * 60.00014 * 1 2 3 33 33 H 1.09005 * 109.47194 * 179.97438 * 1 2 3 34 34 H 0.97002 * 119.99767 * 265.00034 * 4 2 1 35 35 H 0.96994 * 119.99661 * 179.97438 * 8 7 5 36 36 H 1.09002 * 109.68117 * 307.46888 * 15 13 2 37 37 H 1.08997 * 109.68282 * 68.02795 * 15 13 2 38 38 H 1.07994 * 125.91034 * 359.96001 * 20 19 17 39 39 H 1.08000 * 120.37979 * 359.97283 * 23 22 21 40 40 H 1.07997 * 119.93996 * 180.22383 * 24 23 22 41 41 H 1.07997 * 119.61193 * 179.61588 * 25 24 23 42 42 H 1.08994 * 109.68610 * 69.18722 * 28 16 15 43 43 H 1.09005 * 109.68027 * 189.74095 * 28 16 15 44 44 H 1.09003 * 109.51287 * 292.37921 * 29 28 16 45 45 H 1.09000 * 109.51449 * 172.22796 * 29 28 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 7 2.0183 -0.6906 -1.1961 5 6 2.1491 -0.0075 -2.3757 6 1 1.8919 1.0403 -2.4243 7 6 2.6124 -0.6617 -3.5090 8 7 2.9254 -1.9388 -3.4498 9 14 2.7901 0.2699 -5.1182 10 1 4.1519 0.8560 -5.2031 11 1 2.5805 -0.6617 -6.2554 12 1 1.7793 1.3563 -5.1755 13 6 2.0399 -0.7212 1.2492 14 1 1.6785 -0.2069 2.1397 15 6 3.5729 -0.7273 1.2483 16 7 4.0342 -1.5825 2.3534 17 6 4.9520 -1.1407 3.2360 18 8 5.4040 -0.0150 3.1322 19 6 5.4047 -2.0132 4.3181 20 6 5.4336 -3.4002 4.3094 21 7 5.9091 -3.8103 5.4737 22 6 6.1914 -2.7584 6.2393 23 6 6.7107 -2.6478 7.5415 24 6 6.9115 -1.4096 8.0750 25 6 6.5910 -0.2664 7.3356 26 7 6.1042 -0.3665 6.1256 27 7 5.8929 -1.6202 5.5445 28 6 3.4637 -2.9342 2.4665 29 6 1.9361 -2.8206 2.4081 30 8 1.5638 -2.0692 1.2502 31 1 -0.3634 0.5139 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 -0.3634 -1.0277 -0.0005 34 1 2.2490 -1.6318 -1.1525 35 1 3.2487 -2.3960 -4.2418 36 1 3.9379 -1.1232 0.3006 37 1 3.9441 0.2877 1.3901 38 1 5.1217 -4.0351 3.4934 39 1 6.9577 -3.5335 8.1080 40 1 7.3131 -1.3112 9.0727 41 1 6.7477 0.7105 7.7686 42 1 3.8177 -3.5523 1.6415 43 1 3.7626 -3.3806 3.4149 44 1 1.5742 -2.3139 3.3028 45 1 1.4987 -3.8174 2.3513 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001485642645.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:02:07 Heat of formation + Delta-G solvation = 58.986759 kcal Electronic energy + Delta-G solvation = -30504.920760 eV Core-core repulsion = 26332.402973 eV Total energy + Delta-G solvation = -4172.517787 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 2.50 seconds Orbital eigenvalues (eV) -43.79157 -41.40430 -39.60960 -39.04194 -37.13387 -35.90797 -34.72255 -34.18097 -32.50523 -31.95900 -30.85602 -30.10879 -28.86783 -26.37817 -25.72332 -25.05522 -24.88468 -23.79206 -22.87814 -21.33258 -21.02897 -19.40647 -18.98634 -18.55801 -18.41467 -17.62534 -17.49624 -16.91854 -16.78309 -16.56798 -16.24702 -16.17543 -15.78618 -15.31691 -15.19543 -14.99048 -14.69884 -14.66950 -14.30675 -13.98378 -13.86262 -13.82992 -13.48368 -13.09335 -12.84875 -12.75605 -12.55681 -12.52352 -12.45794 -12.21764 -12.16709 -11.81705 -11.68659 -11.55361 -11.25773 -11.13143 -11.03258 -10.93582 -10.62543 -9.77449 -9.38299 -8.93789 -7.88424 -5.15460 -0.62382 -0.31069 0.53588 1.10870 1.48427 1.49656 1.57543 1.65018 1.91806 2.19804 2.58700 2.76125 2.85471 2.98676 3.41334 3.45065 3.61860 3.65375 3.78905 3.91693 3.92161 3.94210 4.06134 4.11930 4.19199 4.26281 4.30838 4.42846 4.51765 4.61214 4.73969 4.78927 4.79919 4.82687 4.84002 4.97952 5.04414 5.08902 5.18059 5.24270 5.30501 5.55293 5.60832 6.10295 6.23569 6.32154 6.33844 6.38122 6.85347 7.40658 8.16011 8.42267 9.34727 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.018878 B = 0.002561 C = 0.002518 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1482.881818 B =10930.067436 C =11115.281106 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.174 3.826 3 H 0.058 0.942 4 N -0.725 5.725 5 C -0.234 4.234 6 H 0.074 0.926 7 C -0.075 4.075 8 N -0.966 5.966 9 Si 0.967 3.033 10 H -0.292 1.292 11 H -0.297 1.297 12 H -0.271 1.271 13 C 0.094 3.906 14 H 0.073 0.927 15 C 0.100 3.900 16 N -0.595 5.595 17 C 0.590 3.410 18 O -0.574 6.574 19 C -0.094 4.094 20 C 0.079 3.921 21 N -0.481 5.481 22 C 0.177 3.823 23 C -0.028 4.028 24 C -0.137 4.137 25 C 0.137 3.863 26 N -0.303 5.303 27 N -0.253 5.253 28 C 0.046 3.954 29 C 0.045 3.955 30 O -0.379 6.379 31 H 0.065 0.935 32 H 0.039 0.961 33 H 0.047 0.953 34 H 0.379 0.621 35 H 0.249 0.751 36 H 0.068 0.932 37 H 0.080 0.920 38 H 0.231 0.769 39 H 0.199 0.801 40 H 0.216 0.784 41 H 0.245 0.755 42 H 0.093 0.907 43 H 0.131 0.869 44 H 0.059 0.941 45 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.494 -3.177 30.486 31.139 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.065 3.935 3 H 0.076 0.924 4 N -0.366 5.366 5 C -0.366 4.366 6 H 0.092 0.908 7 C -0.267 4.267 8 N -0.617 5.617 9 Si 0.797 3.203 10 H -0.219 1.219 11 H -0.224 1.224 12 H -0.196 1.196 13 C 0.035 3.965 14 H 0.091 0.909 15 C -0.023 4.023 16 N -0.328 5.328 17 C 0.379 3.621 18 O -0.454 6.454 19 C -0.214 4.214 20 C -0.082 4.082 21 N -0.201 5.201 22 C -0.069 4.069 23 C -0.055 4.055 24 C -0.162 4.162 25 C -0.054 4.054 26 N -0.115 5.115 27 N -0.021 5.021 28 C -0.076 4.076 29 C -0.032 4.032 30 O -0.297 6.297 31 H 0.084 0.916 32 H 0.058 0.942 33 H 0.066 0.934 34 H 0.212 0.788 35 H 0.057 0.943 36 H 0.087 0.913 37 H 0.099 0.901 38 H 0.247 0.753 39 H 0.216 0.784 40 H 0.233 0.767 41 H 0.261 0.739 42 H 0.111 0.889 43 H 0.148 0.852 44 H 0.078 0.922 45 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 5.399 -2.608 29.631 30.231 hybrid contribution 0.552 0.554 -1.083 1.336 sum 5.951 -2.053 28.548 29.234 Atomic orbital electron populations 1.22169 0.96859 1.01243 1.00518 1.20479 0.93769 0.94552 0.84693 0.92369 1.42473 1.77979 1.10526 1.05632 1.19606 1.34577 0.94083 0.88380 0.90771 1.25459 1.03290 0.96833 1.01103 1.69824 1.52673 1.10009 1.29147 0.85236 0.77647 0.77497 0.79967 1.21910 1.22378 1.19552 1.22608 0.91042 0.84229 0.98670 0.90934 1.22143 0.95698 0.95810 0.88646 1.47879 1.40219 1.16943 1.27724 1.16849 0.79075 0.85272 0.80913 1.90826 1.57989 1.21461 1.75119 1.20631 1.17245 0.95184 0.88295 1.23940 0.98025 0.89212 0.96975 1.70485 1.18661 1.27192 1.03783 1.22172 1.05247 0.81853 0.97620 1.21241 0.93595 1.02392 0.88270 1.22242 1.00111 0.89587 1.04270 1.25305 0.88164 1.04419 0.87465 1.76161 1.20223 0.99634 1.15439 1.46699 1.38489 1.05388 1.11572 1.23416 0.95762 0.82585 1.05812 1.23204 0.92925 0.98675 0.88415 1.88071 1.75318 1.23364 1.42981 0.91573 0.94170 0.93400 0.78833 0.94265 0.91341 0.90107 0.75350 0.78388 0.76712 0.73889 0.88909 0.85195 0.92231 0.84670 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.42 9.35 71.98 0.67 -4.75 16 2 C 0.17 7.05 2.74 44.99 0.12 7.17 16 3 H 0.06 2.37 8.08 -2.39 -0.02 2.35 16 4 N -0.72 -36.79 4.29 -322.95 -1.38 -38.17 16 5 C -0.23 -13.13 9.93 84.03 0.83 -12.29 16 6 H 0.07 4.00 7.83 -2.91 -0.02 3.98 16 7 C -0.07 -4.34 5.50 84.86 0.47 -3.88 16 8 N -0.97 -59.83 13.06 21.65 0.28 -59.54 16 9 Si 0.97 47.30 29.55 68.60 2.03 49.32 16 10 H -0.29 -14.18 7.11 99.48 0.71 -13.47 16 11 H -0.30 -14.64 7.11 99.48 0.71 -13.93 16 12 H -0.27 -12.54 7.11 99.48 0.71 -11.83 16 13 C 0.09 3.28 2.53 30.69 0.08 3.35 16 14 H 0.07 2.28 8.14 -2.38 -0.02 2.26 16 15 C 0.10 3.76 5.87 86.35 0.51 4.26 16 16 N -0.60 -19.13 3.02 -822.58 -2.48 -21.62 16 17 C 0.59 20.93 7.66 86.31 0.66 21.59 16 18 O -0.57 -25.03 16.58 -4.52 -0.07 -25.11 16 19 C -0.09 -2.78 6.73 40.40 0.27 -2.51 16 20 C 0.08 1.87 9.56 84.74 0.81 2.68 16 21 N -0.48 -11.30 11.25 -192.62 -2.17 -13.47 16 22 C 0.18 3.81 7.85 134.00 1.05 4.86 16 23 C -0.03 -0.28 10.11 22.40 0.23 -0.05 16 24 C -0.14 -0.59 10.03 22.22 0.22 -0.37 16 25 C 0.14 1.41 11.30 85.24 0.96 2.37 16 26 N -0.30 -7.40 11.94 -57.04 -0.68 -8.08 16 27 N -0.25 -6.92 4.05 -181.37 -0.74 -7.65 16 28 C 0.05 1.07 5.47 86.36 0.47 1.55 16 29 C 0.04 1.05 6.99 72.08 0.50 1.56 16 30 O -0.38 -12.70 9.22 -148.98 -1.37 -14.07 16 31 H 0.07 1.97 8.14 -2.38 -0.02 1.95 16 32 H 0.04 1.56 8.14 -2.39 -0.02 1.54 16 33 H 0.05 1.83 7.68 -2.38 -0.02 1.81 16 34 H 0.38 20.86 7.20 -92.71 -0.67 20.19 16 35 H 0.25 15.01 8.31 -92.71 -0.77 14.24 16 36 H 0.07 3.03 7.26 -2.39 -0.02 3.01 16 37 H 0.08 3.27 7.07 -2.39 -0.02 3.26 16 38 H 0.23 3.90 5.93 -2.91 -0.02 3.89 16 39 H 0.20 0.59 8.06 -2.91 -0.02 0.57 16 40 H 0.22 -1.42 8.06 -2.91 -0.02 -1.44 16 41 H 0.25 0.08 8.06 -2.91 -0.02 0.05 16 42 H 0.09 2.16 8.14 -2.39 -0.02 2.14 16 43 H 0.13 2.38 3.77 -2.38 -0.01 2.37 16 44 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 45 H 0.14 2.38 8.14 -2.39 -0.02 2.36 16 Total: -1.00 -87.95 372.04 1.65 -86.31 By element: Atomic # 1 Polarization: 26.18 SS G_CDS: 0.37 Total: 26.55 kcal Atomic # 6 Polarization: 17.67 SS G_CDS: 7.86 Total: 25.54 kcal Atomic # 7 Polarization: -141.37 SS G_CDS: -7.17 Total: -148.54 kcal Atomic # 8 Polarization: -37.73 SS G_CDS: -1.45 Total: -39.18 kcal Atomic # 14 Polarization: 47.30 SS G_CDS: 2.03 Total: 49.32 kcal Total: -87.95 1.65 -86.31 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001485642645.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 145.292 kcal (2) G-P(sol) polarization free energy of solvation -87.954 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.338 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.649 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.305 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.987 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.50 seconds