Wall clock time and date at job start Wed Apr 1 2020 04:02:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08995 * 109.47528 * 2 1 4 4 N 1.46503 * 109.46892 * 120.00257 * 2 1 3 5 5 C 1.36933 * 119.99681 * 274.99546 * 4 2 1 6 6 H 1.07999 * 120.00354 * 359.97438 * 5 4 2 7 7 C 1.38812 * 119.99787 * 180.27811 * 5 4 2 8 8 N 1.31621 * 120.00243 * 359.72542 * 7 5 4 9 9 Si 1.86803 * 120.00106 * 179.72705 * 7 5 4 10 10 H 1.48497 * 109.47471 * 89.99958 * 9 7 5 11 11 H 1.48501 * 109.47071 * 209.99919 * 9 7 5 12 12 H 1.48502 * 109.47000 * 329.99493 * 9 7 5 13 13 C 1.52998 * 109.46908 * 239.99957 * 2 1 3 14 14 H 1.08999 * 109.51644 * 64.90380 * 13 2 1 15 15 C 1.53297 * 109.51329 * 185.00225 * 13 2 1 16 16 N 1.47149 * 108.38847 * 172.22803 * 15 13 2 17 17 C 1.34771 * 120.98684 * 129.44040 * 16 15 13 18 18 O 1.21761 * 120.00032 * 352.69917 * 17 16 15 19 19 C 1.46199 * 120.00395 * 172.69685 * 17 16 15 20 20 C 1.38722 * 126.76424 * 153.21936 * 19 17 16 21 21 N 1.32273 * 108.17537 * 179.97438 * 20 19 17 22 22 C 1.33137 * 109.71888 * 0.02562 * 21 20 19 23 23 C 1.40625 * 132.29066 * 179.97438 * 22 21 20 24 24 C 1.36304 * 119.22255 * 180.02562 * 23 22 21 25 25 C 1.39871 * 120.12084 * 0.02666 * 24 23 22 26 26 N 1.30797 * 120.78366 * 359.97133 * 25 24 23 27 27 N 1.36651 * 108.62676 * 359.76953 * 22 21 20 28 28 C 1.47159 * 118.03314 * 309.46585 * 16 15 13 29 29 C 1.53288 * 108.38549 * 50.53004 * 28 16 15 30 30 O 1.42959 * 109.22837 * 307.70251 * 29 28 16 31 31 H 1.08999 * 109.46662 * 59.99790 * 1 2 3 32 32 H 1.09001 * 109.47090 * 180.02562 * 1 2 3 33 33 H 1.09001 * 109.46508 * 299.99751 * 1 2 3 34 34 H 0.96996 * 120.00169 * 95.00336 * 4 2 1 35 35 H 0.96998 * 120.00496 * 180.02562 * 8 7 5 36 36 H 1.09009 * 109.68073 * 291.95177 * 15 13 2 37 37 H 1.09003 * 109.68199 * 52.49804 * 15 13 2 38 38 H 1.07998 * 125.91015 * 359.96542 * 20 19 17 39 39 H 1.08002 * 120.38786 * 359.97438 * 23 22 21 40 40 H 1.08002 * 119.93731 * 179.97438 * 24 23 22 41 41 H 1.08007 * 119.61252 * 180.02562 * 25 24 23 42 42 H 1.09004 * 109.68087 * 170.26030 * 28 16 15 43 43 H 1.09000 * 109.67681 * 290.80901 * 28 16 15 44 44 H 1.09002 * 109.51313 * 67.62257 * 29 28 16 45 45 H 1.09008 * 109.51323 * 187.77168 * 29 28 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0183 -0.6907 1.1962 5 6 2.1492 -0.0075 2.3757 6 1 1.8928 1.0405 2.4241 7 6 2.6173 -0.6605 3.5077 8 7 2.9303 -1.9376 3.4486 9 14 2.8030 0.2732 5.1149 10 1 1.5390 0.1827 5.8890 11 1 3.9114 -0.3189 5.9061 12 1 3.1064 1.6982 4.8273 13 6 2.0400 -0.7213 -1.2492 14 1 1.7505 -0.1598 -2.1375 15 6 3.5678 -0.8319 -1.1889 16 7 4.0155 -1.6876 -2.2991 17 6 4.9959 -1.2867 -3.1323 18 8 5.4333 -0.1529 -3.0569 19 6 5.5344 -2.2132 -4.1269 20 6 6.1191 -1.8811 -5.3402 21 7 6.4756 -3.0012 -5.9467 22 6 6.1511 -4.0459 -5.1879 23 6 6.3087 -5.4316 -5.3680 24 6 5.8695 -6.2829 -4.3983 25 6 5.2694 -5.7779 -3.2401 26 7 5.1216 -4.4895 -3.0700 27 7 5.5655 -3.5874 -4.0415 28 6 3.3605 -2.9939 -2.4730 29 6 1.8429 -2.7780 -2.4707 30 8 1.4751 -2.0332 -1.3072 31 1 -0.3632 0.5139 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 -0.3632 0.5138 0.8900 34 1 2.2491 -1.6318 1.1526 35 1 3.2571 -2.3940 4.2397 36 1 4.0118 0.1589 -1.2869 37 1 3.8665 -1.2761 -0.2393 38 1 6.2589 -0.8811 -5.7233 39 1 6.7716 -5.8168 -6.2645 40 1 5.9844 -7.3493 -4.5248 41 1 4.9248 -6.4599 -2.4768 42 1 3.6673 -3.4350 -3.4214 43 1 3.6384 -3.6559 -1.6528 44 1 1.5526 -2.2247 -3.3639 45 1 1.3378 -3.7439 -2.4596 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001485642650.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:02:14 Heat of formation + Delta-G solvation = 99.653600 kcal Electronic energy + Delta-G solvation = -31096.807262 eV Core-core repulsion = 26926.052922 eV Total energy + Delta-G solvation = -4170.754341 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 4.30 seconds Orbital eigenvalues (eV) -43.01030 -40.05720 -38.66894 -38.00416 -35.55878 -34.71940 -33.91226 -32.26627 -31.63598 -30.34890 -29.95310 -28.37274 -27.59318 -25.39730 -24.34745 -23.98625 -23.49187 -22.71335 -21.81026 -20.01756 -19.57714 -18.34289 -17.95850 -17.32220 -17.10490 -16.70448 -16.22654 -16.18814 -15.59120 -15.35700 -14.74759 -14.63243 -14.30061 -14.17992 -14.08044 -13.84537 -13.41354 -13.37315 -13.28098 -13.06142 -12.86191 -12.33792 -12.01853 -11.85862 -11.64340 -11.32985 -11.18395 -11.06261 -10.81697 -10.77746 -10.44695 -10.36825 -10.31690 -10.11618 -9.87113 -9.86116 -9.76785 -9.55897 -8.90595 -8.64439 -8.29522 -6.91359 -5.72725 -3.01027 -0.08293 0.50755 1.32652 1.97155 2.85481 2.87806 3.06326 3.46164 3.51727 3.52879 3.59368 3.65744 4.00292 4.05872 4.37117 4.46989 4.62087 4.78079 4.85720 4.91831 5.07337 5.13486 5.17820 5.27276 5.32338 5.34681 5.44825 5.51616 5.62914 5.70935 5.76231 5.88072 5.96806 6.02092 6.06577 6.24194 6.38473 6.42552 6.57238 6.69474 6.81014 7.01071 7.16514 7.20883 7.39930 7.48707 7.73949 8.06226 8.45409 9.57742 10.14284 10.51408 11.49568 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.014922 B = 0.003033 C = 0.002929 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1876.031235 B = 9230.643532 C = 9558.184728 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.183 3.817 3 H 0.061 0.939 4 N -0.718 5.718 5 C -0.238 4.238 6 H 0.070 0.930 7 C -0.012 4.012 8 N -0.931 5.931 9 Si 0.905 3.095 10 H -0.291 1.291 11 H -0.293 1.293 12 H -0.282 1.282 13 C 0.078 3.922 14 H 0.056 0.944 15 C 0.087 3.913 16 N -0.599 5.599 17 C 0.595 3.405 18 O -0.527 6.527 19 C -0.052 4.052 20 C 0.101 3.899 21 N -0.465 5.465 22 C 0.178 3.822 23 C -0.007 4.007 24 C -0.170 4.170 25 C 0.126 3.874 26 N -0.247 5.247 27 N -0.256 5.256 28 C 0.083 3.917 29 C 0.045 3.955 30 O -0.358 6.358 31 H 0.032 0.968 32 H 0.056 0.944 33 H 0.053 0.947 34 H 0.389 0.611 35 H 0.254 0.746 36 H 0.099 0.901 37 H 0.101 0.899 38 H 0.202 0.798 39 H 0.164 0.836 40 H 0.160 0.840 41 H 0.205 0.795 42 H 0.086 0.914 43 H 0.091 0.909 44 H 0.045 0.955 45 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.511 -11.162 -20.515 23.617 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.072 3.928 3 H 0.079 0.921 4 N -0.360 5.360 5 C -0.369 4.369 6 H 0.088 0.912 7 C -0.208 4.208 8 N -0.579 5.579 9 Si 0.736 3.264 10 H -0.218 1.218 11 H -0.219 1.219 12 H -0.208 1.208 13 C 0.019 3.981 14 H 0.073 0.927 15 C -0.034 4.034 16 N -0.331 5.331 17 C 0.382 3.618 18 O -0.404 6.404 19 C -0.172 4.172 20 C -0.060 4.060 21 N -0.185 5.185 22 C -0.067 4.067 23 C -0.035 4.035 24 C -0.196 4.196 25 C -0.065 4.065 26 N -0.058 5.058 27 N -0.028 5.028 28 C -0.040 4.040 29 C -0.033 4.033 30 O -0.276 6.276 31 H 0.051 0.949 32 H 0.075 0.925 33 H 0.072 0.928 34 H 0.224 0.776 35 H 0.064 0.936 36 H 0.117 0.883 37 H 0.119 0.881 38 H 0.218 0.782 39 H 0.182 0.818 40 H 0.177 0.823 41 H 0.222 0.778 42 H 0.104 0.896 43 H 0.109 0.891 44 H 0.064 0.936 45 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 3.621 -9.923 -20.137 22.739 hybrid contribution 0.279 -0.479 0.886 1.045 sum 3.900 -10.402 -19.251 22.227 Atomic orbital electron populations 1.22323 0.98430 1.01585 0.99581 1.20264 0.92850 0.94638 0.85042 0.92136 1.42413 1.77690 1.10963 1.04967 1.19244 1.36322 0.93878 0.87453 0.91177 1.24710 1.02189 0.95947 0.97954 1.69670 1.50804 1.08660 1.28777 0.86225 0.77204 0.78882 0.84091 1.21834 1.21903 1.20771 1.22927 0.91479 0.84112 0.99613 0.92651 1.22526 0.95160 0.96597 0.89155 1.48087 1.35936 1.19093 1.29983 1.16580 0.79741 0.85819 0.79668 1.90876 1.60776 1.18605 1.70134 1.21423 1.15036 0.78600 1.02150 1.23180 0.95330 0.98292 0.89232 1.70475 1.22266 0.96733 1.29015 1.21277 1.03115 0.96104 0.86167 1.20644 0.95246 0.87274 1.00323 1.21577 1.01549 1.02442 0.94009 1.24421 0.92713 0.91613 0.97803 1.76525 1.16255 1.02133 1.10846 1.47057 1.36729 1.06033 1.12972 1.22980 0.92955 0.84720 1.03375 1.22980 0.93760 0.97261 0.89313 1.88099 1.70878 1.27159 1.41470 0.94860 0.92502 0.92791 0.77619 0.93645 0.88296 0.88058 0.78157 0.81835 0.82252 0.77832 0.89650 0.89064 0.93648 0.88182 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.98 9.30 37.16 0.35 -2.64 16 2 C 0.18 3.68 2.80 -67.93 -0.19 3.49 16 3 H 0.06 1.21 8.08 -51.93 -0.42 0.79 16 4 N -0.72 -17.80 4.24 -53.42 -0.23 -18.03 16 5 C -0.24 -6.53 9.93 -15.06 -0.15 -6.68 16 6 H 0.07 1.87 7.83 -52.49 -0.41 1.46 16 7 C -0.01 -0.34 5.50 -17.43 -0.10 -0.44 16 8 N -0.93 -27.95 13.06 55.49 0.72 -27.22 16 9 Si 0.90 22.50 29.55 -169.99 -5.02 17.47 16 10 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 11 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16 12 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 13 C 0.08 1.38 2.57 -26.58 -0.07 1.31 16 14 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 15 C 0.09 1.60 5.84 -3.53 -0.02 1.58 16 16 N -0.60 -9.82 3.02 -173.98 -0.53 -10.35 16 17 C 0.59 10.02 7.62 -13.07 -0.10 9.92 16 18 O -0.53 -10.20 16.48 5.13 0.08 -10.12 16 19 C -0.05 -0.75 6.29 -81.84 -0.51 -1.26 16 20 C 0.10 1.28 11.79 -17.18 -0.20 1.07 16 21 N -0.46 -5.80 11.25 -12.24 -0.14 -5.94 16 22 C 0.18 1.97 7.85 -156.06 -1.23 0.75 16 23 C -0.01 -0.05 10.11 -39.38 -0.40 -0.45 16 24 C -0.17 -0.74 10.03 -39.67 -0.40 -1.14 16 25 C 0.13 0.77 11.30 -17.38 -0.20 0.57 16 26 N -0.25 -2.65 7.13 30.62 0.22 -2.43 16 27 N -0.26 -3.21 3.22 -8.68 -0.03 -3.23 16 28 C 0.08 1.15 4.62 -3.53 -0.02 1.13 16 29 C 0.05 0.61 6.98 37.31 0.26 0.87 16 30 O -0.36 -6.24 9.24 -35.23 -0.33 -6.57 16 31 H 0.03 0.53 8.14 -51.93 -0.42 0.10 16 32 H 0.06 1.12 7.57 -51.93 -0.39 0.72 16 33 H 0.05 1.06 8.14 -51.93 -0.42 0.64 16 34 H 0.39 10.40 7.08 -40.82 -0.29 10.11 16 35 H 0.25 7.41 8.31 -40.82 -0.34 7.07 16 36 H 0.10 1.89 7.06 -51.92 -0.37 1.52 16 37 H 0.10 2.18 6.94 -51.93 -0.36 1.82 16 38 H 0.20 2.05 8.06 -52.49 -0.42 1.63 16 39 H 0.16 0.62 8.06 -52.49 -0.42 0.20 16 40 H 0.16 0.09 8.06 -52.49 -0.42 -0.33 16 41 H 0.21 0.48 8.06 -52.48 -0.42 0.06 16 42 H 0.09 1.08 4.20 -51.93 -0.22 0.86 16 43 H 0.09 1.32 7.34 -51.93 -0.38 0.94 16 44 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 45 H 0.10 1.11 8.14 -51.92 -0.42 0.69 16 LS Contribution 368.38 15.07 5.55 5.55 Total: -1.00 -35.63 368.38 -8.44 -44.07 By element: Atomic # 1 Polarization: 14.48 SS G_CDS: -5.78 Total: 8.70 kcal Atomic # 6 Polarization: 11.05 SS G_CDS: -2.97 Total: 8.08 kcal Atomic # 7 Polarization: -67.22 SS G_CDS: 0.03 Total: -67.19 kcal Atomic # 8 Polarization: -16.44 SS G_CDS: -0.24 Total: -16.68 kcal Atomic # 14 Polarization: 22.50 SS G_CDS: -5.02 Total: 17.47 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -35.63 -8.44 -44.07 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001485642650.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 143.720 kcal (2) G-P(sol) polarization free energy of solvation -35.630 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 108.090 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.436 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.066 kcal (6) G-S(sol) free energy of system = (1) + (5) 99.654 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.30 seconds