Wall clock time and date at job start Wed Apr 1 2020 04:02:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08998 * 109.46790 * 2 1 4 4 N 1.46501 * 109.47058 * 240.00088 * 2 1 3 5 5 C 1.36942 * 119.99868 * 84.99831 * 4 2 1 6 6 H 1.07997 * 120.00002 * 0.02562 * 5 4 2 7 7 C 1.38808 * 119.99560 * 179.97438 * 5 4 2 8 8 N 1.31620 * 120.00376 * 0.02562 * 7 5 4 9 9 Si 1.86807 * 119.99661 * 180.02562 * 7 5 4 10 10 H 1.48496 * 109.47287 * 90.00148 * 9 7 5 11 11 H 1.48506 * 109.46970 * 210.00573 * 9 7 5 12 12 H 1.48501 * 109.46712 * 330.00035 * 9 7 5 13 13 C 1.52997 * 109.47035 * 120.00372 * 2 1 3 14 14 H 1.08995 * 109.51569 * 174.89588 * 13 2 1 15 15 C 1.53302 * 109.51147 * 294.99801 * 13 2 1 16 16 N 1.47152 * 108.38446 * 172.22442 * 15 13 2 17 17 C 1.34772 * 120.98191 * 129.44283 * 16 15 13 18 18 O 1.21759 * 120.00160 * 352.72056 * 17 16 15 19 19 C 1.46191 * 120.00148 * 172.71668 * 17 16 15 20 20 C 1.38724 * 126.76135 * 153.20810 * 19 17 16 21 21 N 1.32282 * 108.17463 * 179.97438 * 20 19 17 22 22 C 1.33128 * 109.71651 * 359.97438 * 21 20 19 23 23 C 1.40626 * 132.28774 * 180.02562 * 22 21 20 24 24 C 1.36312 * 119.22193 * 179.97438 * 23 22 21 25 25 C 1.39873 * 120.11819 * 0.02562 * 24 23 22 26 26 N 1.30795 * 120.78265 * 359.97438 * 25 24 23 27 27 N 1.36647 * 108.62938 * 359.76604 * 22 21 20 28 28 C 1.47154 * 118.03933 * 309.46666 * 16 15 13 29 29 C 1.53299 * 108.38147 * 50.53328 * 28 16 15 30 30 O 1.42964 * 109.51215 * 54.74355 * 13 2 1 31 31 H 1.09005 * 109.46723 * 59.99813 * 1 2 3 32 32 H 1.08991 * 109.47029 * 179.97438 * 1 2 3 33 33 H 1.08994 * 109.46785 * 299.99998 * 1 2 3 34 34 H 0.96997 * 120.00042 * 265.00642 * 4 2 1 35 35 H 0.97000 * 119.99523 * 179.97438 * 8 7 5 36 36 H 1.08998 * 109.67891 * 52.50293 * 15 13 2 37 37 H 1.08994 * 109.68219 * 291.94962 * 15 13 2 38 38 H 1.08001 * 125.91634 * 359.95872 * 20 19 17 39 39 H 1.08000 * 120.39435 * 359.96655 * 23 22 21 40 40 H 1.08000 * 119.93830 * 179.97438 * 24 23 22 41 41 H 1.08007 * 119.60461 * 179.97438 * 25 24 23 42 42 H 1.09003 * 109.67878 * 290.81385 * 28 16 15 43 43 H 1.08989 * 109.71435 * 170.27134 * 28 16 15 44 44 H 1.08995 * 109.51428 * 67.62379 * 29 28 16 45 45 H 1.09003 * 109.51338 * 187.77688 * 29 28 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0184 -0.6906 -1.1962 5 6 2.1491 -0.0074 -2.3758 6 1 1.8926 1.0406 -2.4242 7 6 2.6123 -0.6617 -3.5090 8 7 2.9254 -1.9387 -3.4499 9 14 2.7913 0.2704 -5.1180 10 1 4.1536 0.8555 -5.2022 11 1 2.5813 -0.6608 -6.2555 12 1 1.7812 1.3575 -5.1752 13 6 2.0400 -0.7213 1.2492 14 1 3.1261 -0.8016 1.2054 15 6 1.6350 0.0696 2.4984 16 7 1.9697 -0.7336 3.6850 17 6 2.6771 -0.2054 4.7033 18 8 3.1623 0.9062 4.5955 19 6 2.8619 -0.9669 5.9375 20 6 3.9147 -0.8531 6.8336 21 7 3.7132 -1.7130 7.8183 22 6 2.5808 -2.3803 7.6072 23 6 1.9245 -3.3858 8.3391 24 6 0.7507 -3.8936 7.8676 25 6 0.2107 -3.4164 6.6687 26 7 0.8191 -2.4812 5.9860 27 7 2.0215 -1.9338 6.4431 28 6 1.5098 -2.1308 3.7268 29 6 1.9210 -2.8144 2.4178 30 8 1.4658 -2.0290 1.3133 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3633 -1.0276 -0.0005 33 1 -0.3633 0.5138 0.8900 34 1 2.2490 -1.6317 -1.1527 35 1 3.2487 -2.3959 -4.2420 36 1 0.5628 0.2647 2.4776 37 1 2.1798 1.0132 2.5281 38 1 4.7538 -0.1792 6.7428 39 1 2.3455 -3.7516 9.2640 40 1 0.2371 -4.6665 8.4202 41 1 -0.7196 -3.8249 6.3025 42 1 0.4250 -2.1572 3.8298 43 1 1.9712 -2.6446 4.5700 44 1 3.0066 -2.9030 2.3787 45 1 1.4720 -3.8065 2.3685 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001485642651.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:02:24 Heat of formation + Delta-G solvation = 99.575590 kcal Electronic energy + Delta-G solvation = -30732.190840 eV Core-core repulsion = 26561.433117 eV Total energy + Delta-G solvation = -4170.757723 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -43.12083 -40.19957 -38.77448 -38.10223 -35.61058 -34.75771 -34.03973 -32.46269 -31.75044 -30.45880 -30.05566 -28.42537 -27.26156 -25.53012 -24.73406 -24.17159 -23.46408 -22.79290 -21.88400 -20.13172 -19.58630 -18.48045 -18.07141 -17.26442 -17.20606 -16.82199 -16.31803 -16.25288 -15.77973 -15.36616 -15.02049 -14.58156 -14.43403 -14.30635 -14.20142 -13.98268 -13.51417 -13.48268 -13.27192 -13.06385 -12.91357 -12.49107 -12.23147 -12.01066 -11.72354 -11.32887 -11.27050 -11.11614 -10.83075 -10.71391 -10.52218 -10.47002 -10.33939 -10.16353 -9.96162 -9.86746 -9.82231 -9.63362 -8.87778 -8.75524 -8.44349 -6.91449 -5.71615 -3.00336 -0.19762 0.38839 1.20286 1.85620 2.67328 2.76371 2.93402 3.46620 3.49232 3.51671 3.53220 3.53405 3.94521 3.98435 4.25771 4.34315 4.59924 4.67628 4.75157 4.81748 4.95076 5.03164 5.14523 5.17014 5.20385 5.22263 5.35448 5.47139 5.61335 5.66284 5.67748 5.79707 5.80821 5.97119 5.99864 6.01056 6.20930 6.34695 6.47785 6.66677 6.83681 6.88280 7.08101 7.17585 7.24122 7.47829 7.73749 7.89749 8.46577 9.58438 10.16001 10.52659 11.50875 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.022289 B = 0.002521 C = 0.002420 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1255.911201 B =11104.057599 C =11569.295360 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.185 3.815 3 H 0.060 0.940 4 N -0.719 5.719 5 C -0.238 4.238 6 H 0.071 0.929 7 C -0.014 4.014 8 N -0.931 5.931 9 Si 0.906 3.094 10 H -0.290 1.290 11 H -0.292 1.292 12 H -0.282 1.282 13 C 0.076 3.924 14 H 0.064 0.936 15 C 0.084 3.916 16 N -0.600 5.600 17 C 0.597 3.403 18 O -0.525 6.525 19 C -0.055 4.055 20 C 0.104 3.896 21 N -0.463 5.463 22 C 0.180 3.820 23 C -0.005 4.005 24 C -0.171 4.171 25 C 0.127 3.873 26 N -0.251 5.251 27 N -0.257 5.257 28 C 0.084 3.916 29 C 0.043 3.957 30 O -0.357 6.357 31 H 0.052 0.948 32 H 0.056 0.944 33 H 0.034 0.966 34 H 0.389 0.611 35 H 0.254 0.746 36 H 0.083 0.917 37 H 0.103 0.897 38 H 0.203 0.797 39 H 0.165 0.835 40 H 0.160 0.840 41 H 0.205 0.795 42 H 0.087 0.913 43 H 0.087 0.913 44 H 0.050 0.950 45 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.154 -6.604 27.353 28.804 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.075 3.925 3 H 0.078 0.922 4 N -0.361 5.361 5 C -0.369 4.369 6 H 0.089 0.911 7 C -0.210 4.210 8 N -0.580 5.580 9 Si 0.737 3.263 10 H -0.218 1.218 11 H -0.218 1.218 12 H -0.208 1.208 13 C 0.017 3.983 14 H 0.082 0.918 15 C -0.038 4.038 16 N -0.333 5.333 17 C 0.384 3.616 18 O -0.401 6.401 19 C -0.174 4.174 20 C -0.057 4.057 21 N -0.183 5.183 22 C -0.065 4.065 23 C -0.033 4.033 24 C -0.197 4.197 25 C -0.064 4.064 26 N -0.062 5.062 27 N -0.029 5.029 28 C -0.039 4.039 29 C -0.035 4.035 30 O -0.274 6.274 31 H 0.071 0.929 32 H 0.075 0.925 33 H 0.053 0.947 34 H 0.223 0.777 35 H 0.064 0.936 36 H 0.101 0.899 37 H 0.121 0.879 38 H 0.220 0.780 39 H 0.183 0.817 40 H 0.178 0.822 41 H 0.221 0.779 42 H 0.106 0.894 43 H 0.105 0.895 44 H 0.068 0.932 45 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -5.718 -5.530 26.737 27.895 hybrid contribution -0.106 -0.315 -0.574 0.663 sum -5.824 -5.845 26.164 27.434 Atomic orbital electron populations 1.22412 0.98653 1.01603 0.99534 1.20194 0.92820 0.94628 0.84894 0.92208 1.42356 1.77864 1.10954 1.04889 1.19251 1.36490 0.93850 0.87333 0.91147 1.24739 1.02232 0.95964 0.98030 1.69682 1.50844 1.08640 1.28790 0.86203 0.77774 0.78578 0.83713 1.21768 1.21840 1.20773 1.22986 0.97703 0.83014 0.94628 0.91755 1.22568 1.02045 0.95828 0.83394 1.48027 1.53512 1.13205 1.18545 1.16575 0.78697 0.85028 0.81255 1.90885 1.48980 1.18885 1.81362 1.21362 0.95691 0.98828 1.01541 1.23223 0.97306 0.97180 0.87986 1.70496 1.13116 1.09063 1.25655 1.21286 0.94149 1.01507 0.89541 1.20671 0.92959 0.90682 0.98951 1.21577 0.97067 1.03290 0.97775 1.24382 0.98607 0.91555 0.91891 1.76429 0.94253 1.13550 1.22000 1.47025 1.14427 1.24666 1.16739 1.22999 1.01219 0.81145 0.98531 1.22999 0.99339 0.95249 0.85930 1.88097 1.67466 1.25862 1.46024 0.92868 0.92459 0.94686 0.77693 0.93594 0.89856 0.87920 0.78048 0.81749 0.82216 0.77905 0.89441 0.89496 0.93183 0.88073 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.01 9.06 37.16 0.34 -2.68 16 2 C 0.19 3.77 2.77 -67.93 -0.19 3.58 16 3 H 0.06 1.21 8.08 -51.93 -0.42 0.79 16 4 N -0.72 -18.48 5.10 -53.42 -0.27 -18.75 16 5 C -0.24 -6.69 9.93 -15.06 -0.15 -6.84 16 6 H 0.07 1.91 7.83 -52.49 -0.41 1.50 16 7 C -0.01 -0.40 5.50 -17.43 -0.10 -0.49 16 8 N -0.93 -28.60 13.06 55.49 0.72 -27.87 16 9 Si 0.91 22.70 29.55 -169.99 -5.02 17.67 16 10 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 11 H -0.29 -7.37 7.11 56.52 0.40 -6.97 16 12 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 13 C 0.08 1.35 2.61 -26.58 -0.07 1.28 16 14 H 0.06 1.25 8.14 -51.93 -0.42 0.82 16 15 C 0.08 1.28 5.84 -3.53 -0.02 1.26 16 16 N -0.60 -8.65 3.02 -173.99 -0.53 -9.18 16 17 C 0.60 9.06 7.62 -13.07 -0.10 8.96 16 18 O -0.52 -9.27 16.48 5.14 0.08 -9.19 16 19 C -0.05 -0.71 6.28 -81.85 -0.51 -1.23 16 20 C 0.10 1.23 11.79 -17.18 -0.20 1.03 16 21 N -0.46 -5.38 11.25 -12.24 -0.14 -5.52 16 22 C 0.18 1.80 7.85 -156.08 -1.23 0.57 16 23 C 0.00 -0.03 10.11 -39.37 -0.40 -0.42 16 24 C -0.17 -0.52 10.03 -39.66 -0.40 -0.92 16 25 C 0.13 0.54 11.30 -17.38 -0.20 0.35 16 26 N -0.25 -2.20 7.14 30.62 0.22 -1.98 16 27 N -0.26 -2.84 3.22 -8.68 -0.03 -2.86 16 28 C 0.08 1.03 4.62 -3.53 -0.02 1.01 16 29 C 0.04 0.59 6.98 37.31 0.26 0.85 16 30 O -0.36 -6.24 9.24 -35.23 -0.33 -6.56 16 31 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 32 H 0.06 1.12 7.55 -51.93 -0.39 0.73 16 33 H 0.03 0.54 6.42 -51.93 -0.33 0.21 16 34 H 0.39 10.79 7.59 -40.82 -0.31 10.48 16 35 H 0.25 7.55 8.31 -40.82 -0.34 7.21 16 36 H 0.08 1.21 6.27 -51.93 -0.33 0.88 16 37 H 0.10 1.63 7.06 -51.93 -0.37 1.26 16 38 H 0.20 1.93 8.06 -52.49 -0.42 1.50 16 39 H 0.16 0.47 8.06 -52.49 -0.42 0.05 16 40 H 0.16 -0.10 8.06 -52.49 -0.42 -0.53 16 41 H 0.20 0.05 8.06 -52.48 -0.42 -0.37 16 42 H 0.09 1.00 7.34 -51.93 -0.38 0.62 16 43 H 0.09 1.00 4.20 -51.94 -0.22 0.79 16 44 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 45 H 0.10 1.14 8.14 -51.93 -0.42 0.71 16 LS Contribution 367.14 15.07 5.53 5.53 Total: -1.00 -36.70 367.14 -8.40 -45.10 By element: Atomic # 1 Polarization: 12.97 SS G_CDS: -5.68 Total: 7.30 kcal Atomic # 6 Polarization: 9.28 SS G_CDS: -2.98 Total: 6.30 kcal Atomic # 7 Polarization: -66.14 SS G_CDS: -0.02 Total: -66.16 kcal Atomic # 8 Polarization: -15.51 SS G_CDS: -0.24 Total: -15.75 kcal Atomic # 14 Polarization: 22.70 SS G_CDS: -5.02 Total: 17.67 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -36.70 -8.40 -45.10 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001485642651.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 144.678 kcal (2) G-P(sol) polarization free energy of solvation -36.698 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 107.980 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.405 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.102 kcal (6) G-S(sol) free energy of system = (1) + (5) 99.576 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds