Wall clock time and date at job start Wed Apr 1 2020 04:02:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08998 * 109.47086 * 2 1 4 4 N 1.46496 * 109.46985 * 120.00339 * 2 1 3 5 5 C 1.36932 * 119.99861 * 274.99362 * 4 2 1 6 6 H 1.07999 * 120.00438 * 0.02562 * 5 4 2 7 7 C 1.38819 * 120.00059 * 180.02562 * 5 4 2 8 8 N 1.31619 * 119.99750 * 0.02562 * 7 5 4 9 9 Si 1.86797 * 120.00191 * 180.02562 * 7 5 4 10 10 H 1.48507 * 109.46999 * 359.97438 * 9 7 5 11 11 H 1.48497 * 109.47515 * 119.99858 * 9 7 5 12 12 H 1.48502 * 109.47122 * 240.00108 * 9 7 5 13 13 C 1.53005 * 109.47118 * 240.00205 * 2 1 3 14 14 H 1.08997 * 109.51036 * 185.09683 * 13 2 1 15 15 C 1.53299 * 109.50967 * 64.99696 * 13 2 1 16 16 N 1.47159 * 108.38484 * 187.77311 * 15 13 2 17 17 C 1.34775 * 120.98441 * 230.51635 * 16 15 13 18 18 O 1.21761 * 119.99542 * 353.82214 * 17 16 15 19 19 C 1.46187 * 120.00016 * 173.82291 * 17 16 15 20 20 C 1.38728 * 126.75863 * 220.00750 * 19 17 16 21 21 N 1.32288 * 108.17095 * 179.97438 * 20 19 17 22 22 C 1.33124 * 109.71757 * 0.02562 * 21 20 19 23 23 C 1.40634 * 132.29246 * 180.02562 * 22 21 20 24 24 C 1.36312 * 119.22300 * 179.17718 * 23 22 21 25 25 C 1.39883 * 120.12039 * 0.69848 * 24 23 22 26 26 N 1.30798 * 120.77597 * 359.53471 * 25 24 23 27 27 N 1.36654 * 108.62945 * 359.72889 * 22 21 20 28 28 C 1.47155 * 118.03279 * 50.53317 * 16 15 13 29 29 C 1.53290 * 108.38691 * 309.47115 * 28 16 15 30 30 O 1.42959 * 109.51271 * 305.25699 * 13 2 1 31 31 H 1.09005 * 109.47473 * 60.00210 * 1 2 3 32 32 H 1.09004 * 109.46775 * 179.97438 * 1 2 3 33 33 H 1.08992 * 109.47237 * 299.99594 * 1 2 3 34 34 H 0.97005 * 119.99970 * 95.00650 * 4 2 1 35 35 H 0.97005 * 119.99696 * 180.02562 * 8 7 5 36 36 H 1.08993 * 109.68584 * 307.49815 * 15 13 2 37 37 H 1.09000 * 109.68302 * 68.05275 * 15 13 2 38 38 H 1.07993 * 125.91634 * 0.02562 * 20 19 17 39 39 H 1.07997 * 120.37974 * 359.96941 * 23 22 21 40 40 H 1.07997 * 119.93968 * 180.25866 * 24 23 22 41 41 H 1.07996 * 119.61070 * 179.55717 * 25 24 23 42 42 H 1.09003 * 109.67574 * 69.18941 * 28 16 15 43 43 H 1.08996 * 109.68159 * 189.73989 * 28 16 15 44 44 H 1.09001 * 109.51033 * 172.22847 * 29 28 16 45 45 H 1.09007 * 109.51110 * 292.32473 * 29 28 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0183 -0.6907 1.1961 5 6 2.1492 -0.0076 2.3756 6 1 1.8920 1.0402 2.4243 7 6 2.6124 -0.6619 3.5090 8 7 2.9262 -1.9387 3.4496 9 14 2.7902 0.2698 5.1182 10 1 2.3755 1.6820 4.9210 11 1 1.9300 -0.3595 6.1523 12 1 4.2072 0.2277 5.5605 13 6 2.0400 -0.7212 -1.2493 14 1 3.1261 -0.8013 -1.2055 15 6 1.6349 0.0698 -2.4984 16 7 1.9697 -0.7333 -3.6852 17 6 2.6763 -0.2047 -4.7039 18 8 2.9508 0.9816 -4.7032 19 6 3.1131 -1.0555 -5.8095 20 6 4.3374 -1.0079 -6.4602 21 7 4.3419 -1.9394 -7.3994 22 6 3.1806 -2.5902 -7.3921 23 6 2.6842 -3.6491 -8.1733 24 6 1.4349 -4.1328 -7.9218 25 6 0.6548 -3.5686 -6.9070 26 7 1.1122 -2.5806 -6.1821 27 7 2.3925 -2.0659 -6.4064 28 6 1.5098 -2.1305 -3.7270 29 6 1.9209 -2.8142 -2.4181 30 8 1.4658 -2.0289 -1.3136 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 -0.3633 0.5137 0.8899 34 1 2.2491 -1.6319 1.1525 35 1 3.2495 -2.3960 4.2416 36 1 0.5627 0.2649 -2.4777 37 1 2.1796 1.0134 -2.5281 38 1 5.1469 -0.3286 -6.2378 39 1 3.2908 -4.0823 -8.9547 40 1 1.0438 -4.9484 -8.5119 41 1 -0.3367 -3.9535 -6.7196 42 1 0.4250 -2.1569 -3.8300 43 1 1.9717 -2.6439 -4.5703 44 1 1.4720 -3.8063 -2.3690 45 1 3.0066 -2.9036 -2.3794 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001485642654.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:02:31 Heat of formation + Delta-G solvation = 94.440877 kcal Electronic energy + Delta-G solvation = -30701.045253 eV Core-core repulsion = 26530.064872 eV Total energy + Delta-G solvation = -4170.980381 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 2.64 seconds Orbital eigenvalues (eV) -43.11819 -40.21698 -38.76045 -38.12595 -35.60495 -34.73952 -34.08025 -32.47650 -31.74456 -30.48100 -30.04857 -28.43803 -27.27311 -25.50973 -24.75518 -24.17168 -23.47069 -22.81976 -21.87066 -20.15018 -19.59528 -18.48150 -18.07271 -17.33068 -17.23238 -16.81873 -16.29740 -16.24290 -15.79006 -15.31683 -15.06797 -14.56678 -14.52159 -14.34279 -14.21071 -13.94868 -13.52173 -13.46871 -13.28454 -13.06557 -12.89630 -12.49289 -12.25712 -12.01676 -11.74429 -11.38024 -11.23820 -11.13216 -10.84295 -10.72216 -10.54732 -10.54014 -10.34762 -10.14462 -9.96243 -9.87406 -9.83810 -9.64596 -8.89003 -8.74726 -8.47665 -6.92205 -5.72418 -3.01101 -0.19675 0.42085 1.17805 1.88844 2.61378 2.76097 2.86018 3.45775 3.49643 3.51489 3.53323 3.53669 3.93991 3.97271 4.24807 4.33946 4.59145 4.67886 4.74396 4.78853 4.94702 5.05372 5.13444 5.16119 5.18115 5.21983 5.34430 5.46295 5.60679 5.64783 5.67631 5.76770 5.79119 5.96844 5.98976 5.99202 6.19841 6.32957 6.46849 6.66193 6.83045 6.88203 7.07888 7.17014 7.22182 7.46284 7.73669 7.87311 8.45673 9.57673 10.15128 10.51771 11.50107 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.021158 B = 0.002522 C = 0.002450 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1323.040953 B =11101.776263 C =11423.983294 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.185 3.815 3 H 0.060 0.940 4 N -0.719 5.719 5 C -0.237 4.237 6 H 0.071 0.929 7 C -0.014 4.014 8 N -0.931 5.931 9 Si 0.906 3.094 10 H -0.280 1.280 11 H -0.292 1.292 12 H -0.292 1.292 13 C 0.076 3.924 14 H 0.064 0.936 15 C 0.084 3.916 16 N -0.598 5.598 17 C 0.598 3.402 18 O -0.523 6.523 19 C -0.050 4.050 20 C 0.099 3.901 21 N -0.461 5.461 22 C 0.177 3.823 23 C -0.002 4.002 24 C -0.174 4.174 25 C 0.131 3.869 26 N -0.255 5.255 27 N -0.257 5.257 28 C 0.076 3.924 29 C 0.044 3.956 30 O -0.356 6.356 31 H 0.035 0.965 32 H 0.056 0.944 33 H 0.052 0.948 34 H 0.389 0.611 35 H 0.254 0.746 36 H 0.084 0.916 37 H 0.102 0.898 38 H 0.202 0.798 39 H 0.165 0.835 40 H 0.160 0.840 41 H 0.205 0.795 42 H 0.083 0.917 43 H 0.093 0.907 44 H 0.101 0.899 45 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.549 -7.106 -27.240 28.517 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.075 3.925 3 H 0.078 0.922 4 N -0.361 5.361 5 C -0.369 4.369 6 H 0.089 0.911 7 C -0.210 4.210 8 N -0.579 5.579 9 Si 0.737 3.263 10 H -0.205 1.205 11 H -0.219 1.219 12 H -0.219 1.219 13 C 0.016 3.984 14 H 0.082 0.918 15 C -0.038 4.038 16 N -0.331 5.331 17 C 0.385 3.615 18 O -0.399 6.399 19 C -0.170 4.170 20 C -0.061 4.061 21 N -0.181 5.181 22 C -0.068 4.068 23 C -0.030 4.030 24 C -0.200 4.200 25 C -0.060 4.060 26 N -0.066 5.066 27 N -0.029 5.029 28 C -0.047 4.047 29 C -0.034 4.034 30 O -0.274 6.274 31 H 0.053 0.947 32 H 0.075 0.925 33 H 0.072 0.928 34 H 0.223 0.777 35 H 0.064 0.936 36 H 0.102 0.898 37 H 0.120 0.880 38 H 0.219 0.781 39 H 0.183 0.817 40 H 0.178 0.822 41 H 0.221 0.779 42 H 0.102 0.898 43 H 0.110 0.890 44 H 0.119 0.881 45 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -4.270 -5.966 -26.654 27.645 hybrid contribution -0.092 -0.327 0.529 0.628 sum -4.362 -6.293 -26.125 27.224 Atomic orbital electron populations 1.22414 0.98627 1.01617 0.99574 1.20192 0.92847 0.94623 0.84862 0.92180 1.42362 1.77851 1.10967 1.04893 1.19296 1.36371 0.93893 0.87307 0.91084 1.24744 1.02239 0.95979 0.98038 1.69693 1.50889 1.08670 1.28666 0.86131 0.77258 0.78809 0.84085 1.20543 1.21929 1.21938 1.23002 0.97686 0.83039 0.94634 0.91764 1.22581 1.02303 0.95712 0.83229 1.48061 1.53128 1.13286 1.18590 1.16585 0.78180 0.86113 0.80633 1.90888 1.56715 1.13971 1.78351 1.21338 0.95162 0.96245 1.04234 1.23185 0.94936 0.96897 0.91131 1.70480 1.17458 1.08649 1.21467 1.21273 0.89706 1.00741 0.95035 1.20676 0.95315 0.90557 0.96468 1.21575 0.94713 1.03292 1.00390 1.24330 1.00662 0.90628 0.90373 1.76104 0.93352 1.14505 1.22672 1.46994 1.09766 1.22605 1.23507 1.22960 1.01118 0.81379 0.99258 1.22956 0.99341 0.95242 0.85852 1.88099 1.67445 1.25856 1.46018 0.94654 0.92462 0.92842 0.77694 0.93642 0.89804 0.87958 0.78121 0.81725 0.82189 0.77898 0.89833 0.88978 0.88095 0.93138 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.02 9.06 37.16 0.34 -2.68 16 2 C 0.19 3.76 2.77 -67.93 -0.19 3.57 16 3 H 0.06 1.21 8.08 -51.93 -0.42 0.79 16 4 N -0.72 -18.41 5.10 -53.43 -0.27 -18.68 16 5 C -0.24 -6.66 9.93 -15.06 -0.15 -6.81 16 6 H 0.07 1.93 7.83 -52.49 -0.41 1.52 16 7 C -0.01 -0.41 5.50 -17.43 -0.10 -0.50 16 8 N -0.93 -28.52 13.06 55.49 0.72 -27.79 16 9 Si 0.91 22.65 29.55 -169.99 -5.02 17.63 16 10 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 11 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 12 H -0.29 -7.35 7.11 56.52 0.40 -6.94 16 13 C 0.08 1.33 2.61 -26.57 -0.07 1.26 16 14 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 15 C 0.08 1.28 5.80 -3.53 -0.02 1.26 16 16 N -0.60 -8.62 3.02 -173.99 -0.53 -9.15 16 17 C 0.60 9.09 7.59 -13.07 -0.10 8.99 16 18 O -0.52 -9.27 16.59 5.13 0.09 -9.19 16 19 C -0.05 -0.66 6.20 -81.85 -0.51 -1.16 16 20 C 0.10 1.18 11.87 -17.17 -0.20 0.98 16 21 N -0.46 -5.42 11.25 -12.23 -0.14 -5.56 16 22 C 0.18 1.79 7.85 -156.07 -1.23 0.56 16 23 C 0.00 -0.01 10.11 -39.37 -0.40 -0.41 16 24 C -0.17 -0.54 10.03 -39.66 -0.40 -0.94 16 25 C 0.13 0.57 11.30 -17.38 -0.20 0.37 16 26 N -0.26 -2.26 8.10 30.62 0.25 -2.02 16 27 N -0.26 -2.87 3.15 -8.68 -0.03 -2.90 16 28 C 0.08 0.93 4.99 -3.53 -0.02 0.92 16 29 C 0.04 0.60 6.98 37.31 0.26 0.86 16 30 O -0.36 -6.22 9.24 -35.23 -0.33 -6.55 16 31 H 0.03 0.55 6.42 -51.93 -0.33 0.21 16 32 H 0.06 1.12 7.55 -51.93 -0.39 0.73 16 33 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 34 H 0.39 10.76 7.59 -40.82 -0.31 10.45 16 35 H 0.25 7.50 8.31 -40.82 -0.34 7.16 16 36 H 0.08 1.22 6.27 -51.93 -0.33 0.90 16 37 H 0.10 1.60 7.13 -51.93 -0.37 1.23 16 38 H 0.20 1.92 8.06 -52.49 -0.42 1.50 16 39 H 0.17 0.49 8.06 -52.49 -0.42 0.07 16 40 H 0.16 -0.10 8.06 -52.49 -0.42 -0.52 16 41 H 0.20 0.04 8.06 -52.49 -0.42 -0.38 16 42 H 0.08 0.98 7.96 -51.93 -0.41 0.56 16 43 H 0.09 1.06 3.67 -51.93 -0.19 0.87 16 44 H 0.10 1.14 8.14 -51.93 -0.42 0.72 16 45 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 LS Contribution 368.60 15.07 5.55 5.55 Total: -1.00 -36.75 368.60 -8.35 -45.11 By element: Atomic # 1 Polarization: 12.94 SS G_CDS: -5.68 Total: 7.26 kcal Atomic # 6 Polarization: 9.25 SS G_CDS: -2.97 Total: 6.28 kcal Atomic # 7 Polarization: -66.10 SS G_CDS: 0.01 Total: -66.09 kcal Atomic # 8 Polarization: -15.50 SS G_CDS: -0.24 Total: -15.74 kcal Atomic # 14 Polarization: 22.65 SS G_CDS: -5.02 Total: 17.63 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -36.75 -8.35 -45.11 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001485642654.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 139.547 kcal (2) G-P(sol) polarization free energy of solvation -36.751 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 102.796 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.355 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.106 kcal (6) G-S(sol) free energy of system = (1) + (5) 94.441 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.65 seconds