Wall clock time and date at job start Wed Apr 1 2020 02:53:36
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52995 * 1
3 3 H 1.09001 * 110.78155 * 2 1
4 4 C 1.54326 * 110.72370 * 123.24317 * 2 1 3
5 5 N 1.47014 * 107.27319 * 140.55376 * 4 2 1
6 6 C 1.34782 * 125.64708 * 181.02282 * 5 4 2
7 7 O 1.21611 * 120.00045 * 180.02562 * 6 5 4
8 8 C 1.47377 * 119.99931 * 0.02718 * 6 5 4
9 9 C 1.38122 * 126.46708 * 0.03767 * 8 6 5
10 10 N 1.34432 * 108.38704 * 179.73417 * 9 8 6
11 11 H 0.96999 * 125.39016 * 180.22318 * 10 9 8
12 12 C 1.37713 * 109.21621 * 0.38062 * 10 9 8
13 13 C 1.43205 * 125.83949 * 179.88436 * 12 10 9
14 14 N 8.96006 * 108.39883 * 122.38674 * 2 1 3
15 15 C 1.36351 * 108.31528 * 359.61885 * 12 10 9
16 16 C 1.47424 * 108.70383 * 1.28994 * 5 4 2
17 17 C 1.55124 * 104.72159 * 335.55043 * 16 5 4
18 18 H 1.09000 * 111.22767 * 279.18095 * 17 16 5
19 19 N 1.46905 * 110.90677 * 155.27595 * 17 16 5
20 20 C 1.46905 * 110.99835 * 92.97544 * 19 17 16
21 21 C 1.50692 * 109.46712 * 179.97438 * 20 19 17
22 22 O 1.21291 * 120.00589 * 0.02562 * 21 20 19
23 23 N 1.34782 * 119.99905 * 180.02562 * 21 20 19
24 24 C 1.37091 * 120.00514 * 180.02562 * 23 21 20
25 25 H 1.08006 * 119.99825 * 359.97438 * 24 23 21
26 26 C 1.38953 * 120.00517 * 179.97438 * 24 23 21
27 27 N 1.31409 * 119.99760 * 359.97438 * 26 24 23
28 28 Si 1.86800 * 119.99937 * 179.97438 * 26 24 23
29 29 H 1.48494 * 109.47001 * 60.00204 * 28 26 24
30 30 H 1.48505 * 109.46769 * 179.97438 * 28 26 24
31 31 H 1.48490 * 109.47438 * 299.99892 * 28 26 24
32 32 H 1.09005 * 109.47087 * 298.21083 * 1 2 3
33 33 H 1.08999 * 109.47195 * 58.21232 * 1 2 3
34 34 H 1.08996 * 109.47185 * 178.21378 * 1 2 3
35 35 H 1.09001 * 109.87926 * 21.13312 * 4 2 1
36 36 H 1.09000 * 109.87869 * 259.97591 * 4 2 1
37 37 H 1.07999 * 125.81110 * 359.97282 * 9 8 6
38 38 H 1.08001 * 126.49078 * 180.18709 * 15 12 10
39 39 H 1.08994 * 110.37138 * 94.48167 * 16 5 4
40 40 H 1.09005 * 110.36275 * 216.80492 * 16 5 4
41 41 H 1.00897 * 111.00054 * 216.92874 * 19 17 16
42 42 H 1.08999 * 109.47183 * 300.00232 * 20 19 17
43 43 H 1.09000 * 109.47023 * 60.00338 * 20 19 17
44 44 H 0.97008 * 119.99416 * 359.97438 * 23 21 20
45 45 H 0.96995 * 120.00156 * 179.97438 * 27 26 24
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5299 0.0000 0.0000
3 1 1.9167 1.0191 0.0000
4 6 2.0760 -0.7913 1.2072
5 7 3.2444 -1.5508 0.7389
6 6 3.9923 -2.3837 1.4896
7 8 4.9409 -2.9619 0.9949
8 6 3.6604 -2.5938 2.9101
9 6 2.6190 -2.0101 3.6048
10 7 2.6494 -2.4600 4.8713
11 1 2.0261 -2.2102 5.5712
12 6 3.7078 -3.3287 5.0184
13 6 4.0703 -4.0120 6.2236
14 7 4.3580 -4.5540 7.1796
15 6 4.3477 -3.4315 3.8188
16 6 3.4665 -1.2455 -0.6862
17 6 2.0789 -0.7954 -1.2138
18 1 1.4447 -1.6531 -1.4379
19 7 2.2218 0.0721 -2.3907
20 6 2.1558 -0.7102 -3.6324
21 6 2.3051 0.2116 -4.8152
22 8 2.4525 1.4028 -4.6411
23 7 2.2749 -0.2878 -6.0668
24 6 2.4112 0.5506 -7.1429
25 1 2.5424 1.6113 -6.9877
26 6 2.3806 0.0357 -8.4331
27 7 2.2215 -1.2550 -8.6218
28 14 2.5657 1.1783 -9.8993
29 1 3.8749 1.8747 -9.8219
30 1 2.4996 0.3874 -11.1545
31 1 1.4703 2.1807 -9.8871
32 1 -0.3633 0.4858 0.9056
33 1 -0.3633 0.5413 -0.8735
34 1 -0.3633 -1.0271 -0.0320
35 1 1.3129 -1.4759 1.5775
36 1 2.3741 -0.1025 1.9977
37 1 1.9001 -1.3141 3.1987
38 1 5.2155 -4.0375 3.6036
39 1 4.1946 -0.4415 -0.7930
40 1 3.8031 -2.1362 -1.2169
41 1 1.5271 0.8038 -2.3870
42 1 2.9596 -1.4463 -3.6412
43 1 1.1946 -1.2210 -3.6894
44 1 2.1574 -1.2406 -6.2060
45 1 2.1997 -1.6144 -9.5225
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001502712400.mol2 45
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 02:53:36
Heat of formation + Delta-G solvation = 21.562744 kcal
Electronic energy + Delta-G solvation = -28627.191347 eV
Core-core repulsion = 24453.050732 eV
Total energy + Delta-G solvation = -4174.140614 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 345.159 amu
Computer time = 0.95 seconds
Orbital eigenvalues (eV)
-42.09374 -40.09962 -38.41058 -37.75346 -36.96028 -34.83822 -33.83065 -32.63600
-32.03056 -31.22497 -30.74138 -28.76672 -26.90989 -26.38494 -24.37377 -23.30419
-23.07442 -21.52858 -20.71125 -20.48694 -19.31040 -18.97475 -17.88147 -17.13857
-16.75211 -16.22188 -15.74015 -15.68285 -15.22983 -15.13656 -14.80108 -14.65042
-14.48378 -14.27951 -13.80584 -13.75573 -13.54782 -13.51134 -13.44591 -13.26683
-13.09803 -13.05747 -12.76698 -12.42027 -12.26047 -12.20650 -11.62032 -11.53656
-11.28132 -11.23564 -11.01100 -10.69611 -10.44301 -10.21566 -10.14162 -9.71645
-9.50462 -8.96331 -8.81781 -8.49882 -8.16231 -7.96888 -6.41856 -3.82852
0.80801 1.37071 1.72367 2.59357 2.71522 2.85880 3.20168 3.24282
3.26245 3.30385 3.47539 3.89265 3.99690 4.09666 4.22038 4.25968
4.31326 4.49381 4.61818 4.69809 4.96184 4.99533 5.07065 5.12557
5.15249 5.20978 5.25776 5.38457 5.48340 5.51426 5.71537 5.77685
5.81475 5.86729 5.92543 5.94598 6.01092 6.04265 6.14561 6.27102
6.53097 6.90431 7.13376 7.32733 7.54758 7.56240 8.05299 8.05946
8.60393 9.17281 9.53574 10.04648 10.75672
Molecular weight = 345.16amu
Principal moments of inertia in cm(-1)
A = 0.027747 B = 0.001718 C = 0.001652
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1008.858411 B =16298.450584 C =16948.151772
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.146 4.146
2 C -0.109 4.109
3 H 0.100 0.900
4 C 0.099 3.901
5 N -0.615 5.615
6 C 0.602 3.398
7 O -0.536 6.536
8 C -0.217 4.217
9 C 0.070 3.930
10 N -0.520 5.520
11 H 0.427 0.573
12 C 0.043 3.957
13 C 0.279 3.721
14 N -0.403 5.403
15 C -0.047 4.047
16 C 0.117 3.883
17 C 0.077 3.923
18 H 0.064 0.936
19 N -0.655 5.655
20 C 0.050 3.950
21 C 0.440 3.560
22 O -0.584 6.584
23 N -0.562 5.562
24 C -0.301 4.301
25 H 0.103 0.897
26 C 0.023 3.977
27 N -0.901 5.901
28 Si 0.931 3.069
29 H -0.273 1.273
30 H -0.284 1.284
31 H -0.274 1.274
32 H 0.061 0.939
33 H 0.065 0.935
34 H 0.058 0.942
35 H 0.073 0.927
36 H 0.074 0.926
37 H 0.197 0.803
38 H 0.162 0.838
39 H 0.084 0.916
40 H 0.079 0.921
41 H 0.355 0.645
42 H 0.087 0.913
43 H 0.045 0.955
44 H 0.392 0.608
45 H 0.272 0.728
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -5.869 -2.454 26.174 26.936
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.204 4.204
2 C -0.129 4.129
3 H 0.118 0.882
4 C -0.025 4.025
5 N -0.349 5.349
6 C 0.392 3.608
7 O -0.413 6.413
8 C -0.227 4.227
9 C -0.072 4.072
10 N -0.114 5.114
11 H 0.265 0.735
12 C -0.068 4.068
13 C -0.037 4.037
14 N -0.080 5.080
15 C -0.075 4.075
16 C -0.006 4.006
17 C -0.034 4.034
18 H 0.082 0.918
19 N -0.289 5.289
20 C -0.083 4.083
21 C 0.226 3.774
22 O -0.468 6.468
23 N -0.199 5.199
24 C -0.431 4.431
25 H 0.120 0.880
26 C -0.179 4.179
27 N -0.542 5.542
28 Si 0.758 3.242
29 H -0.199 1.199
30 H -0.210 1.210
31 H -0.199 1.199
32 H 0.080 0.920
33 H 0.084 0.916
34 H 0.077 0.923
35 H 0.091 0.909
36 H 0.092 0.908
37 H 0.214 0.786
38 H 0.180 0.820
39 H 0.102 0.898
40 H 0.097 0.903
41 H 0.176 0.824
42 H 0.106 0.894
43 H 0.063 0.937
44 H 0.226 0.774
45 H 0.082 0.918
Dipole moment (debyes) X Y Z Total
from point charges -4.176 -2.950 27.514 27.985
hybrid contribution -1.403 0.042 -0.984 1.715
sum -5.579 -2.909 26.530 27.266
Atomic orbital electron populations
1.21813 0.93567 1.02333 1.02675 1.22460 0.96309 1.00541 0.93551
0.88192 1.22408 0.87978 0.94533 0.97543 1.48190 1.30120 1.44628
1.11933 1.16926 0.81598 0.78096 0.84199 1.90825 1.28629 1.48681
1.73199 1.19573 1.01337 1.07192 0.94606 1.23341 1.00442 1.00230
0.83165 1.41650 1.23938 1.34382 1.11451 0.73480 1.15185 0.97033
1.04028 0.90549 1.24274 0.94490 0.93384 0.91537 1.81344 1.07469
1.09625 1.09551 1.21117 0.99344 0.98230 0.88801 1.22339 0.97542
1.01563 0.79137 1.22795 0.95062 0.95253 0.90321 0.91820 1.59931
1.56768 1.12731 0.99428 1.21760 1.00848 0.95991 0.89694 1.19762
0.84745 0.89044 0.83896 1.90523 1.54978 1.16092 1.85244 1.41856
1.63275 1.10463 1.04271 1.19654 1.46840 0.92803 0.83763 0.87950
1.25261 0.97252 0.96353 0.98989 1.69600 1.49848 1.11480 1.23272
0.85916 0.79109 0.79460 0.79723 1.19866 1.20990 1.19939 0.92019
0.91645 0.92284 0.90851 0.90803 0.78629 0.82045 0.89814 0.90257
0.82444 0.89432 0.93670 0.77437 0.91798
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -0.82 9.13 37.15 0.34 -0.48 16
2 C -0.11 -0.77 2.95 -88.79 -0.26 -1.04 16
3 H 0.10 0.77 8.14 -51.93 -0.42 0.35 16
4 C 0.10 0.56 4.58 -3.07 -0.01 0.54 16
5 N -0.61 -5.93 3.32 -171.67 -0.57 -6.50 16
6 C 0.60 6.85 7.84 -12.54 -0.10 6.75 16
7 O -0.54 -8.42 17.17 5.27 0.09 -8.33 16
8 C -0.22 -1.72 6.11 -105.01 -0.64 -2.36 16
9 C 0.07 0.27 10.42 -16.46 -0.17 0.10 16
10 N -0.52 -1.58 6.02 -10.29 -0.06 -1.64 16
11 H 0.43 -0.08 8.96 -40.82 -0.37 -0.45 16
12 C 0.04 0.26 6.90 -83.98 -0.58 -0.32 16
13 C 0.28 2.10 15.88 -22.47 -0.36 1.75 16
14 N -0.40 -3.99 18.54 41.83 0.78 -3.22 16
15 C -0.05 -0.36 10.59 -39.05 -0.41 -0.77 16
16 C 0.12 1.36 6.61 -2.41 -0.02 1.35 16
17 C 0.08 0.80 2.84 -65.44 -0.19 0.61 16
18 H 0.06 0.65 7.72 -51.93 -0.40 0.25 16
19 N -0.66 -9.26 6.03 -105.60 -0.64 -9.90 16
20 C 0.05 0.81 6.03 -4.98 -0.03 0.78 16
21 C 0.44 9.98 7.82 -10.99 -0.09 9.90 16
22 O -0.58 -15.27 15.78 5.55 0.09 -15.18 16
23 N -0.56 -13.93 5.29 -10.96 -0.06 -13.98 16
24 C -0.30 -8.27 9.68 -14.93 -0.14 -8.42 16
25 H 0.10 2.94 7.16 -52.48 -0.38 2.57 16
26 C 0.02 0.62 5.50 -17.47 -0.10 0.52 16
27 N -0.90 -24.24 13.05 55.50 0.72 -23.52 16
28 Si 0.93 20.82 29.55 -169.99 -5.02 15.79 16
29 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16
30 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16
31 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16
32 H 0.06 0.23 8.14 -51.93 -0.42 -0.19 16
33 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16
34 H 0.06 0.32 8.13 -51.93 -0.42 -0.10 16
35 H 0.07 0.26 6.52 -51.93 -0.34 -0.08 16
36 H 0.07 0.27 7.01 -51.93 -0.36 -0.10 16
37 H 0.20 0.19 4.38 -52.49 -0.23 -0.04 16
38 H 0.16 1.23 8.06 -52.49 -0.42 0.81 16
39 H 0.08 1.10 8.14 -51.93 -0.42 0.67 16
40 H 0.08 1.04 8.03 -51.93 -0.42 0.62 16
41 H 0.35 5.06 8.14 -39.29 -0.32 4.74 16
42 H 0.09 1.37 8.14 -51.93 -0.42 0.95 16
43 H 0.05 0.66 8.09 -51.93 -0.42 0.24 16
44 H 0.39 9.31 7.90 -40.82 -0.32 8.99 16
45 H 0.27 6.96 8.31 -40.82 -0.34 6.62 16
LS Contribution 388.08 15.07 5.85 5.85
Total: -1.00 -35.79 388.08 -7.23 -43.02
By element:
Atomic # 1 Polarization: 14.34 SS G_CDS: -5.65 Total: 8.69 kcal
Atomic # 6 Polarization: 11.68 SS G_CDS: -2.76 Total: 8.92 kcal
Atomic # 7 Polarization: -58.93 SS G_CDS: 0.17 Total: -58.76 kcal
Atomic # 8 Polarization: -23.69 SS G_CDS: 0.18 Total: -23.51 kcal
Atomic # 14 Polarization: 20.82 SS G_CDS: -5.02 Total: 15.79 kcal
Total LS contribution 5.85 Total: 5.85 kcal
Total: -35.79 -7.23 -43.02 kcal
The number of atoms in the molecule is 45
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001502712400.mol2 45
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 64.583 kcal
(2) G-P(sol) polarization free energy of solvation -35.791 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.792 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.230 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.020 kcal
(6) G-S(sol) free energy of system = (1) + (5) 21.563 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.95 seconds