Wall clock time and date at job start Wed Apr 1 2020 02:53:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08998 * 110.30451 * 2 1 4 4 C 1.54383 * 110.43339 * 122.23753 * 2 1 3 5 5 N 1.48149 * 104.61788 * 142.78118 * 4 2 1 6 6 C 1.34774 * 127.83685 * 140.39372 * 5 4 2 7 7 O 1.21616 * 119.99988 * 177.39841 * 6 5 4 8 8 C 1.47369 * 119.99980 * 357.40064 * 6 5 4 9 9 C 1.38123 * 126.47130 * 19.87117 * 8 6 5 10 10 N 1.34426 * 108.38945 * 179.83138 * 9 8 6 11 11 H 0.96999 * 125.39078 * 180.13161 * 10 9 8 12 12 C 1.37710 * 109.22469 * 0.44098 * 10 9 8 13 13 C 1.43192 * 125.84876 * 179.72690 * 12 10 9 14 14 N 8.59413 * 133.26678 * 85.89499 * 2 1 3 15 15 C 1.36358 * 108.30824 * 359.72659 * 12 10 9 16 16 C 1.48144 * 104.32327 * 320.41084 * 5 4 2 17 17 C 1.54291 * 110.33835 * 237.82701 * 2 1 3 18 18 H 1.09004 * 110.34021 * 122.15466 * 17 2 1 19 19 N 1.46896 * 110.34400 * 359.89500 * 17 2 1 20 20 C 1.46899 * 111.00130 * 155.00251 * 19 17 2 21 21 C 1.50691 * 109.47301 * 179.97438 * 20 19 17 22 22 O 1.21293 * 120.00120 * 359.97438 * 21 20 19 23 23 N 1.34778 * 120.00030 * 179.97438 * 21 20 19 24 24 C 1.37106 * 120.00115 * 179.97438 * 23 21 20 25 25 H 1.08003 * 119.99672 * 0.02562 * 24 23 21 26 26 C 1.38946 * 119.99984 * 179.97438 * 24 23 21 27 27 N 1.31414 * 120.00239 * 0.02562 * 26 24 23 28 28 Si 1.86804 * 119.99793 * 179.97438 * 26 24 23 29 29 H 1.48497 * 109.47111 * 0.02562 * 28 26 24 30 30 H 1.48499 * 109.46607 * 120.00989 * 28 26 24 31 31 H 1.48504 * 109.46827 * 240.00201 * 28 26 24 32 32 H 1.09001 * 109.47352 * 182.17520 * 1 2 3 33 33 H 1.09007 * 109.47028 * 302.17141 * 1 2 3 34 34 H 1.09002 * 109.47447 * 62.17529 * 1 2 3 35 35 H 1.09000 * 110.40675 * 261.56915 * 4 2 1 36 36 H 1.09009 * 110.40610 * 23.87765 * 4 2 1 37 37 H 1.08000 * 125.80932 * 359.97438 * 9 8 6 38 38 H 1.08005 * 126.49287 * 179.97438 * 15 12 10 39 39 H 1.08990 * 110.41224 * 280.80509 * 16 5 4 40 40 H 1.08997 * 110.40485 * 158.36588 * 16 5 4 41 41 H 1.00905 * 110.99676 * 278.95396 * 19 17 2 42 42 H 1.09001 * 109.46605 * 299.99875 * 20 19 17 43 43 H 1.09001 * 109.47261 * 59.99639 * 20 19 17 44 44 H 0.96997 * 120.00199 * 359.97438 * 23 21 20 45 45 H 0.96994 * 120.00041 * 179.97438 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9082 1.0222 0.0000 4 6 2.0690 -0.7717 1.2237 5 7 3.2693 -1.4794 0.7204 6 6 4.4463 -1.6623 1.3510 7 8 5.3266 -2.3113 0.8191 8 6 4.6664 -1.0760 2.6850 9 6 3.6911 -0.6599 3.5700 10 7 4.2943 -0.1885 4.6750 11 1 3.8400 0.1657 5.4554 12 6 5.6596 -0.2816 4.5210 13 6 6.6415 0.1252 5.4806 14 7 7.4204 0.4480 6.2419 15 6 5.9165 -0.8275 3.2981 16 6 2.8823 -1.9401 -0.6334 17 6 2.0663 -0.7703 -1.2246 18 1 2.7080 -0.1264 -1.8260 19 7 0.9523 -1.2824 -2.0337 20 6 1.3623 -1.4767 -3.4309 21 6 0.1964 -2.0021 -4.2281 22 8 -0.8710 -2.1960 -3.6857 23 7 0.3397 -2.2565 -5.5439 24 6 -0.7209 -2.7349 -6.2691 25 1 -1.6713 -2.9076 -5.7861 26 6 -0.5732 -2.9967 -7.6257 27 7 0.5831 -2.7861 -8.2135 28 14 -2.0181 -3.6493 -8.6136 29 1 -3.1981 -3.7994 -7.7246 30 1 -2.3403 -2.6974 -9.7069 31 1 -1.6644 -4.9693 -9.1948 32 1 -0.3634 -1.0269 0.0390 33 1 -0.3633 0.5472 0.8699 34 1 -0.3634 0.4797 -0.9088 35 1 2.3420 -0.0790 2.0198 36 1 1.3262 -1.4855 1.5802 37 1 2.6250 -0.7074 3.4037 38 1 6.8901 -1.0311 2.8773 39 1 2.2675 -2.8376 -0.5682 40 1 3.7691 -2.1288 -1.2385 41 1 0.5842 -2.1366 -1.6427 42 1 1.6896 -0.5249 -3.8492 43 1 2.1827 -2.1932 -3.4725 44 1 1.1932 -2.1011 -5.9778 45 1 0.6862 -2.9692 -9.1605 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001502712401.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:53:50 Heat of formation + Delta-G solvation = 29.150188 kcal Electronic energy + Delta-G solvation = -28765.617262 eV Core-core repulsion = 24591.805664 eV Total energy + Delta-G solvation = -4173.811598 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 2.22 seconds Orbital eigenvalues (eV) -42.11009 -40.11970 -38.44354 -37.76388 -36.97416 -34.76401 -33.82010 -32.38097 -32.02455 -31.21901 -30.70345 -28.71662 -26.73777 -26.07785 -24.41942 -23.61251 -23.11135 -22.17689 -20.68922 -19.66511 -19.34485 -18.95748 -17.92572 -17.28215 -16.31079 -16.25521 -15.84923 -15.70491 -15.56135 -15.27182 -14.83290 -14.53130 -14.50095 -14.16391 -13.81900 -13.72489 -13.57856 -13.47904 -13.42291 -13.16924 -12.97993 -12.80935 -12.61079 -12.31328 -12.15836 -12.00701 -11.62284 -11.53815 -11.26676 -11.06386 -10.78246 -10.65466 -10.35048 -10.23358 -10.19007 -9.73796 -9.52774 -9.02007 -8.92660 -8.48910 -8.10004 -7.96893 -6.42457 -3.83409 0.78407 1.36658 1.70409 2.56998 2.65565 2.83497 3.14771 3.15917 3.26744 3.33567 3.45825 3.89581 4.04064 4.19381 4.23247 4.32141 4.38971 4.55601 4.66607 4.76044 4.99491 5.08021 5.12888 5.15886 5.19451 5.25701 5.35839 5.49619 5.59576 5.66130 5.69277 5.75987 5.87626 5.93153 5.96275 6.01847 6.09398 6.20868 6.26566 6.51139 6.57317 6.88845 7.14696 7.33961 7.54652 7.56087 8.00384 8.05448 8.59919 9.17066 9.53538 10.04327 10.75224 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.030903 B = 0.001732 C = 0.001668 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 905.855930 B =16163.588621 C =16783.123311 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.095 4.095 3 H 0.081 0.919 4 C 0.088 3.912 5 N -0.617 5.617 6 C 0.608 3.392 7 O -0.539 6.539 8 C -0.215 4.215 9 C 0.074 3.926 10 N -0.519 5.519 11 H 0.427 0.573 12 C 0.045 3.955 13 C 0.278 3.722 14 N -0.402 5.402 15 C -0.049 4.049 16 C 0.078 3.922 17 C 0.076 3.924 18 H 0.090 0.910 19 N -0.650 5.650 20 C 0.047 3.953 21 C 0.441 3.559 22 O -0.584 6.584 23 N -0.563 5.563 24 C -0.299 4.299 25 H 0.104 0.896 26 C 0.022 3.978 27 N -0.901 5.901 28 Si 0.929 3.071 29 H -0.268 1.268 30 H -0.282 1.282 31 H -0.282 1.282 32 H 0.058 0.942 33 H 0.041 0.959 34 H 0.075 0.925 35 H 0.085 0.915 36 H 0.078 0.922 37 H 0.196 0.804 38 H 0.161 0.839 39 H 0.074 0.926 40 H 0.085 0.915 41 H 0.352 0.648 42 H 0.087 0.913 43 H 0.045 0.955 44 H 0.392 0.608 45 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.971 7.283 24.137 25.909 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.115 4.115 3 H 0.099 0.901 4 C -0.035 4.035 5 N -0.351 5.351 6 C 0.398 3.602 7 O -0.416 6.416 8 C -0.225 4.225 9 C -0.068 4.068 10 N -0.114 5.114 11 H 0.266 0.734 12 C -0.066 4.066 13 C -0.037 4.037 14 N -0.079 5.079 15 C -0.077 4.077 16 C -0.046 4.046 17 C -0.036 4.036 18 H 0.108 0.892 19 N -0.281 5.281 20 C -0.086 4.086 21 C 0.226 3.774 22 O -0.469 6.469 23 N -0.200 5.200 24 C -0.429 4.429 25 H 0.122 0.878 26 C -0.179 4.179 27 N -0.542 5.542 28 Si 0.756 3.244 29 H -0.192 1.192 30 H -0.208 1.208 31 H -0.208 1.208 32 H 0.077 0.923 33 H 0.060 0.940 34 H 0.094 0.906 35 H 0.103 0.897 36 H 0.096 0.904 37 H 0.212 0.788 38 H 0.179 0.821 39 H 0.092 0.908 40 H 0.103 0.897 41 H 0.173 0.827 42 H 0.105 0.895 43 H 0.063 0.937 44 H 0.226 0.774 45 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 6.768 7.924 25.268 27.332 hybrid contribution -0.102 -0.977 -0.774 1.251 sum 6.666 6.947 24.494 26.318 Atomic orbital electron populations 1.21504 0.92445 1.02464 1.01715 1.22129 0.97791 0.98870 0.92747 0.90071 1.22986 0.86740 0.95896 0.97861 1.48681 1.12701 1.55933 1.17749 1.16910 0.80283 0.79395 0.83651 1.90824 1.42668 1.40792 1.67311 1.19527 0.93356 1.12931 0.96710 1.23063 0.99181 0.98503 0.86036 1.41633 1.05013 1.48015 1.16693 0.73410 1.15160 0.80700 1.15691 0.95049 1.24264 0.93627 0.93319 0.92507 1.81350 1.08359 1.09779 1.08415 1.21094 0.98786 0.96988 0.90830 1.23268 1.00394 0.97850 0.83137 1.22569 0.91248 0.95299 0.94443 0.89187 1.60334 1.29722 1.37199 1.00889 1.21762 0.96409 1.01018 0.89407 1.19778 0.89584 0.84805 0.83208 1.90521 1.28406 1.57577 1.70347 1.41877 1.13906 1.57211 1.06977 1.19750 0.92935 1.39411 0.90809 0.87849 1.25264 0.97896 0.97728 0.97039 1.69618 1.23577 1.48844 1.12153 0.85808 0.80950 0.78256 0.79368 1.19218 1.20765 1.20784 0.92253 0.94004 0.90581 0.89737 0.90364 0.78762 0.82120 0.90785 0.89699 0.82749 0.89471 0.93659 0.77449 0.91908 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.09 8.12 37.16 0.30 -0.79 16 2 C -0.10 -0.75 3.65 -89.22 -0.33 -1.08 16 3 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 4 C 0.09 0.53 5.40 -2.41 -0.01 0.52 16 5 N -0.62 -5.75 3.32 -170.59 -0.57 -6.31 16 6 C 0.61 6.72 7.88 -12.55 -0.10 6.62 16 7 O -0.54 -8.25 17.26 5.26 0.09 -8.16 16 8 C -0.22 -1.66 5.99 -105.01 -0.63 -2.29 16 9 C 0.07 0.28 10.15 -16.46 -0.17 0.12 16 10 N -0.52 -1.54 6.02 -10.29 -0.06 -1.60 16 11 H 0.43 -0.09 8.96 -40.82 -0.37 -0.45 16 12 C 0.05 0.26 6.90 -83.98 -0.58 -0.32 16 13 C 0.28 2.06 15.88 -22.48 -0.36 1.71 16 14 N -0.40 -3.94 18.54 41.84 0.78 -3.17 16 15 C -0.05 -0.36 10.65 -39.04 -0.42 -0.78 16 16 C 0.08 0.82 6.70 -2.41 -0.02 0.81 16 17 C 0.08 0.79 3.36 -66.31 -0.22 0.56 16 18 H 0.09 0.95 7.82 -51.93 -0.41 0.54 16 19 N -0.65 -8.78 4.16 -106.51 -0.44 -9.22 16 20 C 0.05 0.74 6.02 -4.98 -0.03 0.71 16 21 C 0.44 9.83 7.82 -10.99 -0.09 9.75 16 22 O -0.58 -14.97 15.78 5.55 0.09 -14.89 16 23 N -0.56 -13.83 5.29 -10.96 -0.06 -13.89 16 24 C -0.30 -8.17 9.68 -14.93 -0.14 -8.32 16 25 H 0.10 2.96 7.16 -52.48 -0.38 2.59 16 26 C 0.02 0.59 5.50 -17.47 -0.10 0.50 16 27 N -0.90 -24.20 13.05 55.50 0.72 -23.48 16 28 Si 0.93 20.73 29.55 -169.99 -5.02 15.71 16 29 H -0.27 -5.97 7.11 56.52 0.40 -5.56 16 30 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 31 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 32 H 0.06 0.58 7.53 -51.93 -0.39 0.19 16 33 H 0.04 0.28 8.14 -51.93 -0.42 -0.14 16 34 H 0.08 0.88 7.84 -51.93 -0.41 0.47 16 35 H 0.08 0.29 4.84 -51.93 -0.25 0.04 16 36 H 0.08 0.41 7.84 -51.92 -0.41 0.00 16 37 H 0.20 0.20 5.45 -52.49 -0.29 -0.08 16 38 H 0.16 1.17 8.06 -52.48 -0.42 0.74 16 39 H 0.07 0.79 7.55 -51.93 -0.39 0.39 16 40 H 0.08 1.02 7.90 -51.93 -0.41 0.61 16 41 H 0.35 4.96 7.41 -39.29 -0.29 4.67 16 42 H 0.09 1.30 8.07 -51.93 -0.42 0.88 16 43 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 44 H 0.39 9.26 7.90 -40.82 -0.32 8.94 16 45 H 0.27 6.89 8.31 -40.82 -0.34 6.55 16 LS Contribution 385.04 15.07 5.80 5.80 Total: -1.00 -35.20 385.04 -7.10 -42.30 By element: Atomic # 1 Polarization: 14.74 SS G_CDS: -5.55 Total: 9.19 kcal Atomic # 6 Polarization: 10.60 SS G_CDS: -2.88 Total: 7.72 kcal Atomic # 7 Polarization: -58.04 SS G_CDS: 0.37 Total: -57.67 kcal Atomic # 8 Polarization: -23.22 SS G_CDS: 0.18 Total: -23.04 kcal Atomic # 14 Polarization: 20.73 SS G_CDS: -5.02 Total: 15.71 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -35.20 -7.10 -42.30 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001502712401.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.453 kcal (2) G-P(sol) polarization free energy of solvation -35.201 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.252 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.102 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.303 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.150 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.23 seconds