Wall clock time and date at job start Wed Apr 1 2020 02:53:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08998 * 110.30451 * 2 1 4 4 C 1.54383 * 110.43339 * 122.23753 * 2 1 3 5 5 N 1.48149 * 104.61788 * 142.78118 * 4 2 1 6 6 C 1.34774 * 127.83685 * 140.39372 * 5 4 2 7 7 O 1.21616 * 119.99988 * 177.39841 * 6 5 4 8 8 C 1.47369 * 119.99980 * 357.40064 * 6 5 4 9 9 C 1.38123 * 126.47130 * 19.87117 * 8 6 5 10 10 N 1.34426 * 108.38945 * 179.83138 * 9 8 6 11 11 H 0.96999 * 125.39078 * 180.13161 * 10 9 8 12 12 C 1.37710 * 109.22469 * 0.44098 * 10 9 8 13 13 C 1.43192 * 125.84876 * 179.72690 * 12 10 9 14 14 N 8.59413 * 133.26678 * 85.89499 * 2 1 3 15 15 C 1.36358 * 108.30824 * 359.72659 * 12 10 9 16 16 C 1.48144 * 104.32327 * 320.41084 * 5 4 2 17 17 C 1.54291 * 110.33835 * 237.82701 * 2 1 3 18 18 H 1.09004 * 110.34021 * 122.15466 * 17 2 1 19 19 N 1.46896 * 110.34400 * 359.89500 * 17 2 1 20 20 C 1.46899 * 111.00130 * 155.00251 * 19 17 2 21 21 C 1.50691 * 109.47301 * 179.97438 * 20 19 17 22 22 O 1.21293 * 120.00120 * 359.97438 * 21 20 19 23 23 N 1.34778 * 120.00030 * 179.97438 * 21 20 19 24 24 C 1.37106 * 120.00115 * 179.97438 * 23 21 20 25 25 H 1.08003 * 119.99672 * 0.02562 * 24 23 21 26 26 C 1.38946 * 119.99984 * 179.97438 * 24 23 21 27 27 N 1.31414 * 120.00239 * 0.02562 * 26 24 23 28 28 Si 1.86804 * 119.99793 * 179.97438 * 26 24 23 29 29 H 1.48497 * 109.47111 * 0.02562 * 28 26 24 30 30 H 1.48499 * 109.46607 * 120.00989 * 28 26 24 31 31 H 1.48504 * 109.46827 * 240.00201 * 28 26 24 32 32 H 1.09001 * 109.47352 * 182.17520 * 1 2 3 33 33 H 1.09007 * 109.47028 * 302.17141 * 1 2 3 34 34 H 1.09002 * 109.47447 * 62.17529 * 1 2 3 35 35 H 1.09000 * 110.40675 * 261.56915 * 4 2 1 36 36 H 1.09009 * 110.40610 * 23.87765 * 4 2 1 37 37 H 1.08000 * 125.80932 * 359.97438 * 9 8 6 38 38 H 1.08005 * 126.49287 * 179.97438 * 15 12 10 39 39 H 1.08990 * 110.41224 * 280.80509 * 16 5 4 40 40 H 1.08997 * 110.40485 * 158.36588 * 16 5 4 41 41 H 1.00905 * 110.99676 * 278.95396 * 19 17 2 42 42 H 1.09001 * 109.46605 * 299.99875 * 20 19 17 43 43 H 1.09001 * 109.47261 * 59.99639 * 20 19 17 44 44 H 0.96997 * 120.00199 * 359.97438 * 23 21 20 45 45 H 0.96994 * 120.00041 * 179.97438 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9082 1.0222 0.0000 4 6 2.0690 -0.7717 1.2237 5 7 3.2693 -1.4794 0.7204 6 6 4.4463 -1.6623 1.3510 7 8 5.3266 -2.3113 0.8191 8 6 4.6664 -1.0760 2.6850 9 6 3.6911 -0.6599 3.5700 10 7 4.2943 -0.1885 4.6750 11 1 3.8400 0.1657 5.4554 12 6 5.6596 -0.2816 4.5210 13 6 6.6415 0.1252 5.4806 14 7 7.4204 0.4480 6.2419 15 6 5.9165 -0.8275 3.2981 16 6 2.8823 -1.9401 -0.6334 17 6 2.0663 -0.7703 -1.2246 18 1 2.7080 -0.1264 -1.8260 19 7 0.9523 -1.2824 -2.0337 20 6 1.3623 -1.4767 -3.4309 21 6 0.1964 -2.0021 -4.2281 22 8 -0.8710 -2.1960 -3.6857 23 7 0.3397 -2.2565 -5.5439 24 6 -0.7209 -2.7349 -6.2691 25 1 -1.6713 -2.9076 -5.7861 26 6 -0.5732 -2.9967 -7.6257 27 7 0.5831 -2.7861 -8.2135 28 14 -2.0181 -3.6493 -8.6136 29 1 -3.1981 -3.7994 -7.7246 30 1 -2.3403 -2.6974 -9.7069 31 1 -1.6644 -4.9693 -9.1948 32 1 -0.3634 -1.0269 0.0390 33 1 -0.3633 0.5472 0.8699 34 1 -0.3634 0.4797 -0.9088 35 1 2.3420 -0.0790 2.0198 36 1 1.3262 -1.4855 1.5802 37 1 2.6250 -0.7074 3.4037 38 1 6.8901 -1.0311 2.8773 39 1 2.2675 -2.8376 -0.5682 40 1 3.7691 -2.1288 -1.2385 41 1 0.5842 -2.1366 -1.6427 42 1 1.6896 -0.5249 -3.8492 43 1 2.1827 -2.1932 -3.4725 44 1 1.1932 -2.1011 -5.9778 45 1 0.6862 -2.9692 -9.1605 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001502712401.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:53:44 Heat of formation + Delta-G solvation = 2.503319 kcal Electronic energy + Delta-G solvation = -28766.772757 eV Core-core repulsion = 24591.805664 eV Total energy + Delta-G solvation = -4174.967093 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 4.31 seconds Orbital eigenvalues (eV) -42.58052 -40.91906 -40.01296 -38.85446 -37.62072 -36.13192 -35.47012 -33.33723 -33.07902 -32.52153 -31.29149 -29.66747 -27.79637 -27.15985 -25.78674 -24.65187 -23.63116 -22.80019 -21.14805 -21.08557 -20.41908 -19.90636 -19.65569 -17.93188 -17.66847 -17.08349 -16.86772 -16.60214 -16.43245 -16.21322 -16.05081 -15.74459 -15.54853 -15.30815 -15.00003 -14.78728 -14.50762 -14.17421 -14.09188 -13.91641 -13.80098 -13.74442 -13.69167 -13.44661 -13.27772 -13.13618 -12.93039 -12.82368 -12.70917 -12.36980 -12.09511 -11.98183 -11.49487 -11.47177 -11.37632 -11.05546 -10.28512 -10.25835 -9.97754 -9.75995 -9.42635 -9.23751 -8.43761 -5.92201 0.32994 0.77159 1.20481 1.38869 1.44103 1.58119 1.92078 2.09230 2.10096 2.23873 2.31626 2.49067 2.94176 3.04975 3.24099 3.48987 3.65094 3.73005 3.88632 3.99710 4.08439 4.18947 4.26905 4.37523 4.44432 4.48133 4.56434 4.63541 4.66346 4.77807 4.84672 4.88453 4.96223 5.01116 5.19670 5.35567 5.40734 5.44345 5.50986 5.54145 5.82727 5.94816 6.14532 6.23337 6.39288 6.43937 6.62552 6.63304 7.16117 7.22222 7.60707 8.15283 8.73855 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.030903 B = 0.001732 C = 0.001668 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 905.855930 B =16163.588621 C =16783.123311 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.088 4.088 3 H 0.095 0.905 4 C 0.089 3.911 5 N -0.614 5.614 6 C 0.604 3.396 7 O -0.597 6.597 8 C -0.249 4.249 9 C 0.116 3.884 10 N -0.497 5.497 11 H 0.447 0.553 12 C 0.045 3.955 13 C 0.303 3.697 14 N -0.448 5.448 15 C -0.061 4.061 16 C 0.079 3.921 17 C 0.078 3.922 18 H 0.089 0.911 19 N -0.652 5.652 20 C 0.061 3.939 21 C 0.441 3.559 22 O -0.619 6.619 23 N -0.576 5.576 24 C -0.331 4.331 25 H 0.081 0.919 26 C -0.014 4.014 27 N -0.922 5.922 28 Si 0.992 3.008 29 H -0.271 1.271 30 H -0.272 1.272 31 H -0.273 1.273 32 H 0.047 0.953 33 H 0.070 0.930 34 H 0.044 0.956 35 H 0.121 0.879 36 H 0.097 0.903 37 H 0.234 0.766 38 H 0.149 0.851 39 H 0.072 0.928 40 H 0.063 0.937 41 H 0.348 0.652 42 H 0.103 0.897 43 H 0.061 0.939 44 H 0.395 0.605 45 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.690 8.398 26.035 27.756 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.108 4.108 3 H 0.114 0.886 4 C -0.032 4.032 5 N -0.346 5.346 6 C 0.396 3.604 7 O -0.478 6.478 8 C -0.258 4.258 9 C -0.027 4.027 10 N -0.092 5.092 11 H 0.290 0.710 12 C -0.066 4.066 13 C -0.012 4.012 14 N -0.125 5.125 15 C -0.089 4.089 16 C -0.046 4.046 17 C -0.033 4.033 18 H 0.107 0.893 19 N -0.284 5.284 20 C -0.071 4.071 21 C 0.228 3.772 22 O -0.505 6.505 23 N -0.213 5.213 24 C -0.461 4.461 25 H 0.099 0.901 26 C -0.214 4.214 27 N -0.563 5.563 28 Si 0.816 3.184 29 H -0.196 1.196 30 H -0.198 1.198 31 H -0.198 1.198 32 H 0.066 0.934 33 H 0.089 0.911 34 H 0.063 0.937 35 H 0.138 0.862 36 H 0.115 0.885 37 H 0.250 0.750 38 H 0.167 0.833 39 H 0.090 0.910 40 H 0.082 0.918 41 H 0.168 0.832 42 H 0.121 0.879 43 H 0.079 0.921 44 H 0.229 0.771 45 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 5.481 9.085 27.217 29.212 hybrid contribution 0.262 -1.310 -1.328 1.884 sum 5.743 7.776 25.889 27.634 Atomic orbital electron populations 1.21419 0.92909 1.01784 1.01464 1.22113 0.97186 0.99467 0.92046 0.88640 1.23224 0.85618 0.96577 0.97774 1.48703 1.13263 1.55569 1.17088 1.17399 0.79801 0.78662 0.84545 1.90788 1.44574 1.43511 1.68976 1.19287 0.94586 1.15697 0.96234 1.23436 0.99870 0.94948 0.84491 1.41610 1.03767 1.46675 1.17148 0.70986 1.14853 0.81701 1.16035 0.94058 1.24346 0.93000 0.92109 0.91735 1.81376 1.09587 1.11514 1.10033 1.21103 0.98785 0.97454 0.91575 1.23122 0.99433 0.97990 0.84068 1.22621 0.90354 0.95233 0.95085 0.89269 1.60384 1.31179 1.36973 0.99872 1.21607 0.93715 1.01706 0.90116 1.20840 0.90732 0.82879 0.82711 1.90489 1.30503 1.58562 1.70941 1.41965 1.13489 1.58025 1.07859 1.19717 0.93125 1.41400 0.91826 0.90114 1.26030 1.00446 0.97465 0.97444 1.69683 1.24891 1.49109 1.12640 0.84878 0.77694 0.78017 0.77796 1.19586 1.19768 1.19843 0.93396 0.91135 0.93681 0.86157 0.88501 0.75023 0.83290 0.90989 0.91825 0.83191 0.87868 0.92099 0.77119 0.91431 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.78 8.12 71.98 0.58 -1.19 16 2 C -0.09 -1.12 3.65 -9.89 -0.04 -1.15 16 3 H 0.10 1.01 8.14 -2.39 -0.02 0.99 16 4 C 0.09 0.71 5.40 86.53 0.47 1.18 16 5 N -0.61 -10.28 3.32 -811.88 -2.69 -12.97 16 6 C 0.60 12.85 7.88 86.65 0.68 13.53 16 7 O -0.60 -18.97 17.26 -4.08 -0.07 -19.04 16 8 C -0.25 -3.30 5.99 -20.11 -0.12 -3.42 16 9 C 0.12 0.35 10.15 84.27 0.85 1.21 16 10 N -0.50 -0.84 6.02 -186.47 -1.12 -1.96 16 11 H 0.45 -2.42 8.96 -92.71 -0.83 -3.25 16 12 C 0.05 0.43 6.90 39.03 0.27 0.70 16 13 C 0.30 4.12 15.88 88.33 1.40 5.52 16 14 N -0.45 -8.55 18.54 19.00 0.35 -8.20 16 15 C -0.06 -0.84 10.65 22.62 0.24 -0.60 16 16 C 0.08 1.62 6.70 86.54 0.58 2.20 16 17 C 0.08 1.50 3.36 45.83 0.15 1.66 16 18 H 0.09 1.76 7.82 -2.39 -0.02 1.74 16 19 N -0.65 -17.23 4.16 -490.89 -2.04 -19.27 16 20 C 0.06 1.93 6.02 85.55 0.51 2.45 16 21 C 0.44 20.00 7.82 87.65 0.69 20.68 16 22 O -0.62 -32.44 15.78 -3.07 -0.05 -32.49 16 23 N -0.58 -28.94 5.29 -306.98 -1.62 -30.57 16 24 C -0.33 -18.52 9.68 84.04 0.81 -17.71 16 25 H 0.08 4.80 7.16 -2.91 -0.02 4.78 16 26 C -0.01 -0.76 5.50 84.93 0.47 -0.30 16 27 N -0.92 -49.66 13.05 21.66 0.28 -49.38 16 28 Si 0.99 42.58 29.55 68.60 2.03 44.60 16 29 H -0.27 -11.68 7.11 99.48 0.71 -10.97 16 30 H -0.27 -11.23 7.11 99.48 0.71 -10.52 16 31 H -0.27 -11.28 7.11 99.48 0.71 -10.57 16 32 H 0.05 0.83 7.53 -2.39 -0.02 0.82 16 33 H 0.07 0.67 8.14 -2.38 -0.02 0.65 16 34 H 0.04 0.98 7.84 -2.39 -0.02 0.96 16 35 H 0.12 0.09 4.84 -2.39 -0.01 0.08 16 36 H 0.10 0.52 7.84 -2.38 -0.02 0.50 16 37 H 0.23 -1.11 5.45 -2.91 -0.02 -1.12 16 38 H 0.15 2.30 8.06 -2.91 -0.02 2.28 16 39 H 0.07 1.50 7.55 -2.39 -0.02 1.48 16 40 H 0.06 1.57 7.90 -2.39 -0.02 1.55 16 41 H 0.35 9.72 7.41 -89.69 -0.66 9.05 16 42 H 0.10 2.98 8.07 -2.39 -0.02 2.96 16 43 H 0.06 1.76 8.14 -2.39 -0.02 1.74 16 44 H 0.40 19.04 7.90 -92.71 -0.73 18.31 16 45 H 0.28 13.94 8.31 -92.71 -0.77 13.17 16 Total: -1.00 -81.37 385.04 1.49 -79.88 By element: Atomic # 1 Polarization: 25.78 SS G_CDS: -1.14 Total: 24.64 kcal Atomic # 6 Polarization: 17.19 SS G_CDS: 7.56 Total: 24.75 kcal Atomic # 7 Polarization: -115.50 SS G_CDS: -6.84 Total: -122.34 kcal Atomic # 8 Polarization: -51.41 SS G_CDS: -0.12 Total: -51.53 kcal Atomic # 14 Polarization: 42.58 SS G_CDS: 2.03 Total: 44.60 kcal Total: -81.37 1.49 -79.88 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001502712401.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.386 kcal (2) G-P(sol) polarization free energy of solvation -81.373 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.013 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.490 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.882 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.503 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.31 seconds