Wall clock time and date at job start Wed Apr 1 2020 02:53:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 H 1.09008 * 110.88676 * 2 1 4 4 C 1.55126 * 111.19833 * 236.06938 * 2 1 3 5 5 N 1.47429 * 104.72144 * 279.19602 * 4 2 1 6 6 C 1.34775 * 125.65128 * 155.81763 * 5 4 2 7 7 O 1.21612 * 120.00034 * 185.32701 * 6 5 4 8 8 C 1.47374 * 119.99621 * 5.04829 * 6 5 4 9 9 C 1.38130 * 126.46430 * 187.45623 * 8 6 5 10 10 N 1.34429 * 108.38602 * 179.97438 * 9 8 6 11 11 H 0.96996 * 125.38990 * 180.02562 * 10 9 8 12 12 C 1.37705 * 109.22169 * 0.02562 * 10 9 8 13 13 C 1.43197 * 125.84570 * 179.97438 * 12 10 9 14 14 N 7.09229 * 100.90763 * 265.82904 * 2 1 3 15 15 C 1.36355 * 108.31752 * 359.73942 * 12 10 9 16 16 C 1.47021 * 108.69863 * 335.54644 * 5 4 2 17 17 C 1.54324 * 107.27514 * 1.28960 * 16 5 4 18 18 H 1.08995 * 110.72223 * 263.65406 * 17 16 5 19 19 N 1.46895 * 110.72121 * 140.55354 * 17 16 5 20 20 C 1.46908 * 111.00002 * 86.45524 * 19 17 16 21 21 C 1.50702 * 109.46926 * 179.97438 * 20 19 17 22 22 O 1.21285 * 120.00180 * 0.02562 * 21 20 19 23 23 N 1.34777 * 119.99445 * 179.97438 * 21 20 19 24 24 C 1.37098 * 119.99824 * 180.02562 * 23 21 20 25 25 H 1.08009 * 119.99785 * 359.97438 * 24 23 21 26 26 C 1.38947 * 120.00401 * 180.02562 * 24 23 21 27 27 N 1.31420 * 119.99584 * 359.97438 * 26 24 23 28 28 Si 1.86793 * 120.00406 * 179.97438 * 26 24 23 29 29 H 1.48500 * 109.47011 * 89.99848 * 28 26 24 30 30 H 1.48501 * 109.47145 * 209.99975 * 28 26 24 31 31 H 1.48505 * 109.47361 * 330.00048 * 28 26 24 32 32 H 1.08997 * 109.47584 * 296.12188 * 1 2 3 33 33 H 1.09002 * 109.47037 * 56.12311 * 1 2 3 34 34 H 1.09000 * 109.47302 * 176.11407 * 1 2 3 35 35 H 1.08993 * 110.50038 * 160.34991 * 4 2 1 36 36 H 1.09002 * 110.34454 * 37.95118 * 4 2 1 37 37 H 1.07995 * 125.80783 * 0.02562 * 9 8 6 38 38 H 1.08002 * 126.50225 * 180.28077 * 15 12 10 39 39 H 1.08999 * 109.88160 * 120.71071 * 16 5 4 40 40 H 1.09005 * 109.87995 * 241.71899 * 16 5 4 41 41 H 1.00901 * 111.00459 * 322.50088 * 19 17 16 42 42 H 1.08993 * 109.46901 * 300.00051 * 20 19 17 43 43 H 1.09000 * 109.46496 * 59.99928 * 20 19 17 44 44 H 0.96997 * 120.00352 * 0.02562 * 23 21 20 45 45 H 0.97003 * 119.99627 * 180.02562 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9185 1.0184 0.0000 4 6 2.0908 -0.8073 -1.2000 5 7 2.0139 -2.2161 -0.7725 6 6 1.9472 -3.2834 -1.5928 7 8 1.7893 -4.3970 -1.1302 8 6 2.0594 -3.1003 -3.0508 9 6 1.8676 -4.0686 -4.0170 10 7 2.0599 -3.5077 -5.2235 11 1 1.9866 -3.9670 -6.0746 12 6 2.3774 -2.1778 -5.0597 13 6 2.6538 -1.2460 -6.1113 14 7 2.8720 -0.5065 -6.9457 15 6 2.3785 -1.8986 -3.7250 16 6 2.0285 -2.2643 0.6968 17 6 2.0861 -0.8074 1.2026 18 1 3.1128 -0.5164 1.4242 19 7 1.2319 -0.6335 2.3849 20 6 1.9590 -0.9759 3.6147 21 6 1.0528 -0.7850 4.8036 22 8 -0.0866 -0.4021 4.6424 23 7 1.5084 -1.0410 6.0460 24 6 0.6840 -0.8679 7.1276 25 1 -0.3305 -0.5260 6.9841 26 6 1.1537 -1.1312 8.4085 27 7 2.3882 -1.5467 8.5830 28 14 0.0306 -0.8947 9.8822 29 1 -0.6974 -2.1593 10.1577 30 1 0.8425 -0.5224 11.0686 31 1 -0.9462 0.1856 9.5920 32 1 -0.3634 0.4524 0.9226 33 1 -0.3633 0.5728 -0.8532 34 1 -0.3634 -1.0253 -0.0696 35 1 3.1253 -0.5270 -1.3985 36 1 1.4765 -0.6457 -2.0858 37 1 1.6066 -5.1005 -3.8343 38 1 2.5855 -0.9418 -3.2690 39 1 1.1218 -2.7475 1.0609 40 1 2.9049 -2.8135 1.0410 41 1 0.3853 -1.1763 2.3025 42 1 2.2832 -2.0154 3.5676 43 1 2.8297 -0.3278 3.7141 44 1 2.4196 -1.3476 6.1748 45 1 2.7160 -1.7308 9.4772 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001502712402.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:53:59 Heat of formation + Delta-G solvation = 23.647481 kcal Electronic energy + Delta-G solvation = -28917.388717 eV Core-core repulsion = 24743.338504 eV Total energy + Delta-G solvation = -4174.050213 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 1.53 seconds Orbital eigenvalues (eV) -42.09467 -40.18127 -38.41444 -37.75096 -36.96844 -34.80518 -33.81304 -32.40277 -31.93252 -31.19448 -30.31075 -28.86573 -26.95294 -26.24354 -24.40077 -23.52986 -23.00538 -21.87569 -20.77910 -19.84495 -19.34061 -18.77020 -17.89980 -17.01625 -16.57384 -16.35131 -15.89736 -15.61790 -15.35982 -15.15854 -14.85002 -14.47453 -14.45560 -14.14542 -13.83055 -13.76488 -13.62318 -13.48507 -13.41234 -13.25483 -12.80539 -12.77128 -12.65491 -12.48931 -12.14271 -11.99157 -11.65736 -11.51370 -11.13945 -11.02109 -10.91363 -10.73591 -10.38390 -10.20797 -10.14359 -9.74663 -9.50026 -9.01799 -8.73735 -8.46814 -8.10117 -7.95207 -6.40767 -3.81526 0.80385 1.35755 1.70602 2.55216 2.79922 2.83631 3.18966 3.21197 3.27717 3.33578 3.43755 3.91436 4.03862 4.20154 4.35155 4.37416 4.47918 4.59342 4.65209 4.92013 4.98105 5.05855 5.07875 5.16050 5.23809 5.27278 5.32795 5.50028 5.62833 5.65072 5.73393 5.84101 5.86843 5.92862 5.94903 6.00256 6.15388 6.20314 6.26975 6.44638 6.54057 6.87756 7.15703 7.35270 7.56261 7.57869 8.04334 8.07046 8.61877 9.18800 9.55159 10.06297 10.76885 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.027481 B = 0.001801 C = 0.001746 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1018.627964 B =15543.501992 C =16034.066934 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.092 4.092 3 H 0.095 0.905 4 C 0.091 3.909 5 N -0.606 5.606 6 C 0.602 3.398 7 O -0.546 6.546 8 C -0.221 4.221 9 C 0.114 3.886 10 N -0.522 5.522 11 H 0.428 0.572 12 C 0.046 3.954 13 C 0.277 3.723 14 N -0.401 5.401 15 C -0.085 4.085 16 C 0.080 3.920 17 C 0.080 3.920 18 H 0.096 0.904 19 N -0.650 5.650 20 C 0.047 3.953 21 C 0.441 3.559 22 O -0.584 6.584 23 N -0.563 5.563 24 C -0.299 4.299 25 H 0.103 0.897 26 C 0.022 3.978 27 N -0.901 5.901 28 Si 0.930 3.070 29 H -0.278 1.278 30 H -0.284 1.284 31 H -0.270 1.270 32 H 0.080 0.920 33 H 0.051 0.949 34 H 0.050 0.950 35 H 0.073 0.927 36 H 0.087 0.913 37 H 0.194 0.806 38 H 0.167 0.833 39 H 0.071 0.929 40 H 0.069 0.931 41 H 0.354 0.646 42 H 0.046 0.954 43 H 0.088 0.912 44 H 0.392 0.608 45 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.488 -3.198 -27.182 27.591 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.112 4.112 3 H 0.113 0.887 4 C -0.032 4.032 5 N -0.339 5.339 6 C 0.392 3.608 7 O -0.425 6.425 8 C -0.231 4.231 9 C -0.028 4.028 10 N -0.116 5.116 11 H 0.266 0.734 12 C -0.065 4.065 13 C -0.039 4.039 14 N -0.078 5.078 15 C -0.113 4.113 16 C -0.045 4.045 17 C -0.032 4.032 18 H 0.114 0.886 19 N -0.282 5.282 20 C -0.086 4.086 21 C 0.226 3.774 22 O -0.468 6.468 23 N -0.200 5.200 24 C -0.429 4.429 25 H 0.121 0.879 26 C -0.179 4.179 27 N -0.543 5.543 28 Si 0.757 3.243 29 H -0.204 1.204 30 H -0.209 1.209 31 H -0.194 1.194 32 H 0.099 0.901 33 H 0.070 0.930 34 H 0.069 0.931 35 H 0.091 0.909 36 H 0.105 0.895 37 H 0.211 0.789 38 H 0.184 0.816 39 H 0.089 0.911 40 H 0.087 0.913 41 H 0.175 0.825 42 H 0.064 0.936 43 H 0.106 0.894 44 H 0.226 0.774 45 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 3.177 -1.860 -28.273 28.511 hybrid contribution 0.135 -1.629 0.742 1.795 sum 3.313 -3.489 -27.531 27.948 Atomic orbital electron populations 1.21659 0.93550 1.01809 1.02925 1.22418 0.97318 0.99088 0.92343 0.88656 1.22930 1.00948 0.80592 0.98692 1.48074 1.72986 1.06179 1.06691 1.16938 0.76256 0.83120 0.84441 1.90814 1.50587 1.23846 1.77203 1.19485 1.16289 0.94270 0.93031 1.22410 0.99005 0.99319 0.82093 1.41641 1.52565 1.07956 1.09402 0.73368 1.15217 1.18100 0.83017 0.90200 1.24309 0.93500 0.93746 0.92351 1.81360 1.10095 1.08390 1.07975 1.21778 1.00203 0.99316 0.90031 1.22903 1.02520 0.99366 0.79713 1.22728 0.98033 0.91477 0.90926 0.88618 1.60230 1.07014 1.61659 0.99283 1.21759 0.97245 0.99497 0.90091 1.19777 0.88779 0.84816 0.84026 1.90524 1.19690 1.51235 1.85326 1.41859 1.14794 1.58633 1.04676 1.19703 0.96976 1.42179 0.84033 0.87908 1.25262 0.96528 0.97118 0.99038 1.69617 1.15238 1.45715 1.23692 0.85856 0.79500 0.78788 0.80134 1.20438 1.20947 1.19414 0.90066 0.93000 0.93082 0.90878 0.89501 0.78946 0.81565 0.91082 0.91297 0.82497 0.93602 0.89391 0.77446 0.91884 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.41 8.43 37.15 0.31 -1.10 16 2 C -0.09 -0.80 3.63 -88.36 -0.32 -1.12 16 3 H 0.10 0.74 8.14 -51.92 -0.42 0.32 16 4 C 0.09 0.65 4.59 -2.41 -0.01 0.64 16 5 N -0.61 -6.07 3.31 -171.66 -0.57 -6.63 16 6 C 0.60 6.72 7.83 -12.54 -0.10 6.62 16 7 O -0.55 -8.11 17.24 5.27 0.09 -8.02 16 8 C -0.22 -1.69 6.05 -105.00 -0.64 -2.33 16 9 C 0.11 0.57 11.73 -16.45 -0.19 0.37 16 10 N -0.52 -1.69 6.02 -10.29 -0.06 -1.75 16 11 H 0.43 0.06 8.96 -40.82 -0.37 -0.31 16 12 C 0.05 0.25 6.90 -83.98 -0.58 -0.33 16 13 C 0.28 1.91 15.88 -22.47 -0.36 1.55 16 14 N -0.40 -3.76 18.54 41.84 0.78 -2.98 16 15 C -0.09 -0.51 9.00 -39.04 -0.35 -0.86 16 16 C 0.08 0.90 6.20 -3.06 -0.02 0.88 16 17 C 0.08 0.86 3.04 -65.88 -0.20 0.66 16 18 H 0.10 0.94 7.89 -51.93 -0.41 0.53 16 19 N -0.65 -9.44 4.94 -106.05 -0.52 -9.97 16 20 C 0.05 0.77 6.02 -4.97 -0.03 0.74 16 21 C 0.44 10.09 7.82 -10.98 -0.09 10.01 16 22 O -0.58 -15.43 15.78 5.55 0.09 -15.35 16 23 N -0.56 -14.04 5.29 -10.96 -0.06 -14.10 16 24 C -0.30 -8.28 9.68 -14.93 -0.14 -8.43 16 25 H 0.10 2.98 7.16 -52.48 -0.38 2.61 16 26 C 0.02 0.59 5.50 -17.47 -0.10 0.49 16 27 N -0.90 -24.37 13.05 55.50 0.72 -23.65 16 28 Si 0.93 20.97 29.55 -169.99 -5.02 15.95 16 29 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 30 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 31 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 32 H 0.08 1.00 7.35 -51.93 -0.38 0.61 16 33 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 34 H 0.05 0.55 7.91 -51.93 -0.41 0.14 16 35 H 0.07 0.40 7.76 -51.93 -0.40 0.00 16 36 H 0.09 0.51 5.80 -51.93 -0.30 0.21 16 37 H 0.19 0.61 8.06 -52.49 -0.42 0.19 16 38 H 0.17 0.76 4.93 -52.49 -0.26 0.50 16 39 H 0.07 0.93 7.57 -51.93 -0.39 0.53 16 40 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 41 H 0.35 5.53 7.18 -39.29 -0.28 5.25 16 42 H 0.05 0.69 8.13 -51.93 -0.42 0.27 16 43 H 0.09 1.32 8.08 -51.93 -0.42 0.90 16 44 H 0.39 9.35 7.90 -40.82 -0.32 9.02 16 45 H 0.27 6.95 8.31 -40.82 -0.34 6.61 16 LS Contribution 384.75 15.07 5.80 5.80 Total: -1.00 -35.33 384.75 -7.14 -42.47 By element: Atomic # 1 Polarization: 16.00 SS G_CDS: -5.57 Total: 10.42 kcal Atomic # 6 Polarization: 10.61 SS G_CDS: -2.81 Total: 7.80 kcal Atomic # 7 Polarization: -59.37 SS G_CDS: 0.29 Total: -59.08 kcal Atomic # 8 Polarization: -23.55 SS G_CDS: 0.18 Total: -23.37 kcal Atomic # 14 Polarization: 20.97 SS G_CDS: -5.02 Total: 15.95 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -35.33 -7.14 -42.47 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001502712402.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.121 kcal (2) G-P(sol) polarization free energy of solvation -35.334 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.787 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.140 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.474 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.647 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.53 seconds