Wall clock time and date at job start Wed Apr 1 2020 04:03:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09004 * 109.46643 * 2 1 4 4 N 1.46490 * 109.47438 * 120.00451 * 2 1 3 5 5 C 1.36940 * 120.00018 * 275.00242 * 4 2 1 6 6 H 1.07996 * 120.00410 * 359.97438 * 5 4 2 7 7 C 1.38820 * 119.99711 * 180.02562 * 5 4 2 8 8 N 1.31612 * 120.00072 * 359.97438 * 7 5 4 9 9 Si 1.86802 * 119.99599 * 179.97438 * 7 5 4 10 10 H 1.48500 * 109.47395 * 0.02562 * 9 7 5 11 11 H 1.48505 * 109.46840 * 120.00004 * 9 7 5 12 12 H 1.48495 * 109.47014 * 239.99469 * 9 7 5 13 13 C 1.52999 * 109.47051 * 240.00907 * 2 1 3 14 14 H 1.09004 * 109.51418 * 185.09837 * 13 2 1 15 15 C 1.53292 * 109.51625 * 64.99500 * 13 2 1 16 16 N 1.47145 * 108.38781 * 187.77444 * 15 13 2 17 17 C 1.34777 * 120.98466 * 230.51548 * 16 15 13 18 18 O 1.21706 * 120.00158 * 5.29279 * 17 16 15 19 19 C 1.46671 * 120.00012 * 185.29645 * 17 16 15 20 20 C 1.40331 * 126.56484 * 38.09418 * 19 17 16 21 21 N 1.30999 * 108.78357 * 179.73755 * 20 19 17 22 22 N 1.39899 * 109.55723 * 359.97438 * 21 20 19 23 23 N 1.40025 * 132.51684 * 180.02562 * 22 21 20 24 24 C 1.30837 * 120.65630 * 179.97438 * 23 22 21 25 25 C 1.39732 * 120.97465 * 359.97438 * 24 23 22 26 26 C 1.36560 * 119.94600 * 0.02562 * 25 24 23 27 27 C 1.36755 * 107.87394 * 359.97438 * 22 21 20 28 28 C 1.47152 * 118.03782 * 50.78674 * 16 15 13 29 29 C 1.53719 * 108.16041 * 309.16299 * 28 16 15 30 30 O 1.42960 * 109.51082 * 305.25049 * 13 2 1 31 31 H 1.09000 * 109.47081 * 299.98895 * 1 2 3 32 32 H 1.09002 * 109.47631 * 59.99860 * 1 2 3 33 33 H 1.09003 * 109.46945 * 179.97438 * 1 2 3 34 34 H 0.97007 * 119.99842 * 95.00058 * 4 2 1 35 35 H 0.97006 * 119.99923 * 179.97438 * 8 7 5 36 36 H 1.08999 * 109.68166 * 68.04917 * 15 13 2 37 37 H 1.09001 * 109.68266 * 307.49773 * 15 13 2 38 38 H 1.08004 * 125.60699 * 359.75427 * 20 19 17 39 39 H 1.07998 * 119.51426 * 180.02562 * 24 23 22 40 40 H 1.08004 * 120.03235 * 180.02562 * 25 24 23 41 41 H 1.07989 * 120.45236 * 179.97438 * 26 25 24 42 42 H 1.09000 * 109.68313 * 68.93197 * 28 16 15 43 43 H 1.08998 * 109.68442 * 189.48984 * 28 16 15 44 44 H 1.09001 * 109.65256 * 292.57190 * 29 28 16 45 45 H 1.08994 * 109.48579 * 172.39493 * 29 28 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 7 2.0184 -0.6906 1.1960 5 6 2.1491 -0.0076 2.3757 6 1 1.8926 1.0403 2.4242 7 6 2.6125 -0.6620 3.5089 8 7 2.9255 -1.9390 3.4496 9 14 2.7915 0.2699 5.1179 10 1 2.3763 1.6820 4.9210 11 1 1.9313 -0.3588 6.1524 12 1 4.2086 0.2270 5.5597 13 6 2.0400 -0.7211 -1.2494 14 1 3.1262 -0.8012 -1.2056 15 6 1.6349 0.0699 -2.4984 16 7 1.9696 -0.7330 -3.6851 17 6 2.6763 -0.2043 -4.7038 18 8 3.1298 0.9212 -4.6102 19 6 2.8985 -0.9853 -5.9252 20 6 1.9804 -1.8463 -6.5456 21 7 2.5383 -2.3586 -7.6145 22 7 3.8396 -1.8622 -7.7471 23 7 4.8451 -2.0845 -8.6959 24 6 6.0032 -1.4845 -8.5937 25 6 6.2681 -0.6075 -7.5386 26 6 5.3106 -0.3672 -6.5951 27 6 4.0716 -1.0087 -6.7041 28 6 1.5050 -2.1285 -3.7297 29 6 1.9210 -2.8141 -2.4182 30 8 1.4659 -2.0287 -1.3137 31 1 -0.3633 0.5137 0.8901 32 1 -0.3634 0.5138 -0.8900 33 1 -0.3633 -1.0277 -0.0005 34 1 2.2491 -1.6319 1.1523 35 1 3.2496 -2.3962 4.2414 36 1 2.1796 1.0136 -2.5280 37 1 0.5626 0.2650 -2.4777 38 1 0.9785 -2.0525 -6.1991 39 1 6.7654 -1.6691 -9.3362 40 1 7.2294 -0.1200 -7.4693 41 1 5.5067 0.3088 -5.7761 42 1 0.4199 -2.1511 -3.8307 43 1 1.9636 -2.6414 -4.5750 44 1 3.0067 -2.9025 -2.3792 45 1 1.4727 -3.8064 -2.3686 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001506831578.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:03:43 Heat of formation + Delta-G solvation = 94.380472 kcal Electronic energy + Delta-G solvation = -30174.278867 eV Core-core repulsion = 26003.295866 eV Total energy + Delta-G solvation = -4170.983001 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 2.65 seconds Orbital eigenvalues (eV) -42.34557 -40.21977 -38.54232 -38.06471 -35.51771 -34.54791 -33.72020 -32.52414 -31.68567 -30.56668 -29.84246 -28.43400 -27.15790 -25.26410 -24.97636 -23.84673 -23.55377 -22.90984 -21.68084 -19.70953 -19.53567 -18.55105 -17.78148 -17.31899 -17.01031 -16.67278 -16.29262 -16.12253 -15.78376 -15.25733 -15.17422 -14.65102 -14.46383 -14.43444 -14.02680 -13.89028 -13.35466 -13.29696 -13.10628 -12.92515 -12.87364 -12.49304 -12.15000 -11.99208 -11.86740 -11.37068 -11.30665 -11.12041 -10.95483 -10.84806 -10.72197 -10.52999 -10.27271 -10.15514 -10.07142 -9.82992 -9.81481 -9.64180 -8.88907 -8.67920 -8.41682 -6.91950 -5.72525 -3.01080 -0.25423 0.50065 0.91423 1.73979 2.46655 2.69585 3.03944 3.45360 3.51088 3.53257 3.66436 3.84708 3.98768 3.99487 4.04742 4.38935 4.54154 4.60110 4.71879 4.74540 4.80341 4.93135 5.10248 5.18862 5.31168 5.32341 5.36095 5.46398 5.54683 5.60655 5.68488 5.73099 5.73725 5.83832 5.99905 6.00327 6.22055 6.37393 6.48022 6.66785 6.81152 6.84037 6.92418 7.17652 7.24049 7.48827 7.73545 8.02376 8.45684 9.57654 10.15513 10.51972 11.50000 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.019458 B = 0.002361 C = 0.002272 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1438.635365 B =11854.650958 C =12321.886097 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.185 3.815 3 H 0.059 0.941 4 N -0.719 5.719 5 C -0.237 4.237 6 H 0.071 0.929 7 C -0.014 4.014 8 N -0.931 5.931 9 Si 0.905 3.095 10 H -0.280 1.280 11 H -0.292 1.292 12 H -0.292 1.292 13 C 0.076 3.924 14 H 0.063 0.937 15 C 0.084 3.916 16 N -0.605 5.605 17 C 0.598 3.402 18 O -0.541 6.541 19 C -0.261 4.261 20 C 0.093 3.907 21 N -0.251 5.251 22 N -0.173 5.173 23 N -0.215 5.215 24 C 0.119 3.881 25 C -0.156 4.156 26 C -0.027 4.027 27 C 0.102 3.898 28 C 0.066 3.934 29 C 0.047 3.953 30 O -0.357 6.357 31 H 0.052 0.948 32 H 0.035 0.965 33 H 0.057 0.943 34 H 0.389 0.611 35 H 0.254 0.746 36 H 0.101 0.899 37 H 0.083 0.917 38 H 0.210 0.790 39 H 0.209 0.791 40 H 0.162 0.838 41 H 0.166 0.834 42 H 0.081 0.919 43 H 0.093 0.907 44 H 0.053 0.947 45 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.761 -0.220 -25.936 26.208 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.074 3.926 3 H 0.077 0.923 4 N -0.361 5.361 5 C -0.368 4.368 6 H 0.089 0.911 7 C -0.210 4.210 8 N -0.579 5.579 9 Si 0.737 3.263 10 H -0.206 1.206 11 H -0.219 1.219 12 H -0.220 1.220 13 C 0.017 3.983 14 H 0.081 0.919 15 C -0.038 4.038 16 N -0.338 5.338 17 C 0.386 3.614 18 O -0.419 6.419 19 C -0.278 4.278 20 C -0.087 4.087 21 N -0.076 5.076 22 N -0.040 5.040 23 N -0.027 5.027 24 C -0.074 4.074 25 C -0.181 4.181 26 C -0.054 4.054 27 C -0.024 4.024 28 C -0.058 4.058 29 C -0.031 4.031 30 O -0.275 6.275 31 H 0.071 0.929 32 H 0.054 0.946 33 H 0.076 0.924 34 H 0.223 0.777 35 H 0.064 0.936 36 H 0.120 0.880 37 H 0.101 0.899 38 H 0.226 0.774 39 H 0.225 0.775 40 H 0.179 0.821 41 H 0.184 0.816 42 H 0.099 0.901 43 H 0.111 0.889 44 H 0.071 0.929 45 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 3.152 -1.076 -27.252 27.455 hybrid contribution 0.785 1.167 1.886 2.352 sum 3.937 0.091 -25.366 25.670 Atomic orbital electron populations 1.22416 0.98639 1.01644 0.99551 1.20195 0.92830 0.94606 0.84947 0.92283 1.42365 1.77841 1.10974 1.04905 1.19295 1.36348 0.93871 0.87332 0.91106 1.24740 1.02278 0.95969 0.98021 1.69688 1.50890 1.08652 1.28679 0.86139 0.77242 0.78811 0.84135 1.20555 1.21934 1.21964 1.22974 0.97621 0.83062 0.94668 0.91863 1.22528 1.02019 0.95821 0.83447 1.47965 1.54490 1.12856 1.18517 1.16936 0.77724 0.85273 0.81449 1.90803 1.50552 1.19086 1.81441 1.19761 0.95017 1.10757 1.02269 1.24387 1.00189 0.92821 0.91312 1.77720 0.86202 1.22674 1.20971 1.50923 1.09715 1.28318 1.14997 1.75900 0.97015 1.20968 1.08865 1.24337 0.93118 0.91897 0.97998 1.21747 1.01870 0.99827 0.94704 1.21106 0.88942 0.95988 0.99396 1.19711 0.96272 0.95382 0.91073 1.22821 1.00637 0.81921 1.00374 1.22968 0.99498 0.95178 0.85460 1.88104 1.67468 1.25866 1.46093 0.92915 0.94634 0.92416 0.77690 0.93644 0.88033 0.89910 0.77402 0.77506 0.82051 0.81604 0.90071 0.88914 0.92915 0.87817 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.94 9.06 37.16 0.34 -2.61 16 2 C 0.18 3.65 2.77 -67.94 -0.19 3.46 16 3 H 0.06 1.16 8.08 -51.93 -0.42 0.74 16 4 N -0.72 -18.14 5.10 -53.43 -0.27 -18.41 16 5 C -0.24 -6.58 9.93 -15.05 -0.15 -6.73 16 6 H 0.07 1.90 7.83 -52.49 -0.41 1.49 16 7 C -0.01 -0.41 5.50 -17.43 -0.10 -0.50 16 8 N -0.93 -28.32 13.06 55.49 0.72 -27.59 16 9 Si 0.91 22.47 29.55 -169.99 -5.02 17.45 16 10 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 11 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 12 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 13 C 0.08 1.28 2.61 -26.58 -0.07 1.21 16 14 H 0.06 1.17 8.14 -51.93 -0.42 0.74 16 15 C 0.08 1.19 5.84 -3.54 -0.02 1.17 16 16 N -0.61 -7.67 3.01 -173.56 -0.52 -8.19 16 17 C 0.60 8.15 7.58 -12.86 -0.10 8.05 16 18 O -0.54 -8.91 16.53 5.18 0.09 -8.82 16 19 C -0.26 -3.10 5.31 -104.73 -0.56 -3.65 16 20 C 0.09 0.94 9.56 -17.12 -0.16 0.78 16 21 N -0.25 -3.05 12.61 30.75 0.39 -2.66 16 22 N -0.17 -2.06 5.25 32.44 0.17 -1.89 16 23 N -0.22 -2.09 11.96 30.60 0.37 -1.73 16 24 C 0.12 0.61 11.28 -17.42 -0.20 0.41 16 25 C -0.16 -0.78 10.04 -39.63 -0.40 -1.17 16 26 C -0.03 -0.23 10.08 -39.55 -0.40 -0.63 16 27 C 0.10 1.16 6.84 -84.05 -0.58 0.58 16 28 C 0.07 0.66 5.53 -3.31 -0.02 0.64 16 29 C 0.05 0.58 7.00 37.53 0.26 0.84 16 30 O -0.36 -5.93 9.24 -35.23 -0.33 -6.25 16 31 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 32 H 0.03 0.53 6.42 -51.93 -0.33 0.19 16 33 H 0.06 1.10 7.55 -51.93 -0.39 0.71 16 34 H 0.39 10.61 7.59 -40.82 -0.31 10.30 16 35 H 0.25 7.45 8.31 -40.82 -0.34 7.11 16 36 H 0.10 1.51 7.06 -51.93 -0.37 1.14 16 37 H 0.08 1.10 6.27 -51.93 -0.33 0.77 16 38 H 0.21 1.37 7.14 -52.48 -0.37 1.00 16 39 H 0.21 0.04 8.06 -52.49 -0.42 -0.38 16 40 H 0.16 0.20 8.06 -52.48 -0.42 -0.22 16 41 H 0.17 1.35 8.05 -52.49 -0.42 0.93 16 42 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 43 H 0.09 0.79 4.89 -51.93 -0.25 0.54 16 44 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 45 H 0.10 1.05 8.14 -51.93 -0.42 0.63 16 LS Contribution 372.59 15.07 5.61 5.61 Total: -1.00 -37.08 372.59 -6.83 -43.91 By element: Atomic # 1 Polarization: 12.42 SS G_CDS: -5.70 Total: 6.71 kcal Atomic # 6 Polarization: 4.19 SS G_CDS: -2.33 Total: 1.87 kcal Atomic # 7 Polarization: -61.32 SS G_CDS: 0.85 Total: -60.47 kcal Atomic # 8 Polarization: -14.83 SS G_CDS: -0.24 Total: -15.07 kcal Atomic # 14 Polarization: 22.47 SS G_CDS: -5.02 Total: 17.45 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -37.08 -6.83 -43.91 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001506831578.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 138.287 kcal (2) G-P(sol) polarization free energy of solvation -37.079 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 101.208 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.828 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.906 kcal (6) G-S(sol) free energy of system = (1) + (5) 94.380 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.65 seconds