Wall clock time and date at job start Wed Apr 1 2020 04:03:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09004 * 109.46643 * 2 1 4 4 N 1.46490 * 109.47438 * 120.00451 * 2 1 3 5 5 C 1.36940 * 120.00018 * 275.00242 * 4 2 1 6 6 H 1.07996 * 120.00410 * 359.97438 * 5 4 2 7 7 C 1.38820 * 119.99711 * 180.02562 * 5 4 2 8 8 N 1.31612 * 120.00072 * 359.97438 * 7 5 4 9 9 Si 1.86802 * 119.99599 * 179.97438 * 7 5 4 10 10 H 1.48500 * 109.47395 * 0.02562 * 9 7 5 11 11 H 1.48505 * 109.46840 * 120.00004 * 9 7 5 12 12 H 1.48495 * 109.47014 * 239.99469 * 9 7 5 13 13 C 1.52999 * 109.47051 * 240.00907 * 2 1 3 14 14 H 1.09004 * 109.51418 * 185.09837 * 13 2 1 15 15 C 1.53292 * 109.51625 * 64.99500 * 13 2 1 16 16 N 1.47145 * 108.38781 * 187.77444 * 15 13 2 17 17 C 1.34777 * 120.98466 * 230.51548 * 16 15 13 18 18 O 1.21706 * 120.00158 * 5.29279 * 17 16 15 19 19 C 1.46671 * 120.00012 * 185.29645 * 17 16 15 20 20 C 1.40331 * 126.56484 * 38.09418 * 19 17 16 21 21 N 1.30999 * 108.78357 * 179.73755 * 20 19 17 22 22 N 1.39899 * 109.55723 * 359.97438 * 21 20 19 23 23 N 1.40025 * 132.51684 * 180.02562 * 22 21 20 24 24 C 1.30837 * 120.65630 * 179.97438 * 23 22 21 25 25 C 1.39732 * 120.97465 * 359.97438 * 24 23 22 26 26 C 1.36560 * 119.94600 * 0.02562 * 25 24 23 27 27 C 1.36755 * 107.87394 * 359.97438 * 22 21 20 28 28 C 1.47152 * 118.03782 * 50.78674 * 16 15 13 29 29 C 1.53719 * 108.16041 * 309.16299 * 28 16 15 30 30 O 1.42960 * 109.51082 * 305.25049 * 13 2 1 31 31 H 1.09000 * 109.47081 * 299.98895 * 1 2 3 32 32 H 1.09002 * 109.47631 * 59.99860 * 1 2 3 33 33 H 1.09003 * 109.46945 * 179.97438 * 1 2 3 34 34 H 0.97007 * 119.99842 * 95.00058 * 4 2 1 35 35 H 0.97006 * 119.99923 * 179.97438 * 8 7 5 36 36 H 1.08999 * 109.68166 * 68.04917 * 15 13 2 37 37 H 1.09001 * 109.68266 * 307.49773 * 15 13 2 38 38 H 1.08004 * 125.60699 * 359.75427 * 20 19 17 39 39 H 1.07998 * 119.51426 * 180.02562 * 24 23 22 40 40 H 1.08004 * 120.03235 * 180.02562 * 25 24 23 41 41 H 1.07989 * 120.45236 * 179.97438 * 26 25 24 42 42 H 1.09000 * 109.68313 * 68.93197 * 28 16 15 43 43 H 1.08998 * 109.68442 * 189.48984 * 28 16 15 44 44 H 1.09001 * 109.65256 * 292.57190 * 29 28 16 45 45 H 1.08994 * 109.48579 * 172.39493 * 29 28 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 7 2.0184 -0.6906 1.1960 5 6 2.1491 -0.0076 2.3757 6 1 1.8926 1.0403 2.4242 7 6 2.6125 -0.6620 3.5089 8 7 2.9255 -1.9390 3.4496 9 14 2.7915 0.2699 5.1179 10 1 2.3763 1.6820 4.9210 11 1 1.9313 -0.3588 6.1524 12 1 4.2086 0.2270 5.5597 13 6 2.0400 -0.7211 -1.2494 14 1 3.1262 -0.8012 -1.2056 15 6 1.6349 0.0699 -2.4984 16 7 1.9696 -0.7330 -3.6851 17 6 2.6763 -0.2043 -4.7038 18 8 3.1298 0.9212 -4.6102 19 6 2.8985 -0.9853 -5.9252 20 6 1.9804 -1.8463 -6.5456 21 7 2.5383 -2.3586 -7.6145 22 7 3.8396 -1.8622 -7.7471 23 7 4.8451 -2.0845 -8.6959 24 6 6.0032 -1.4845 -8.5937 25 6 6.2681 -0.6075 -7.5386 26 6 5.3106 -0.3672 -6.5951 27 6 4.0716 -1.0087 -6.7041 28 6 1.5050 -2.1285 -3.7297 29 6 1.9210 -2.8141 -2.4182 30 8 1.4659 -2.0287 -1.3137 31 1 -0.3633 0.5137 0.8901 32 1 -0.3634 0.5138 -0.8900 33 1 -0.3633 -1.0277 -0.0005 34 1 2.2491 -1.6319 1.1523 35 1 3.2496 -2.3962 4.2414 36 1 2.1796 1.0136 -2.5280 37 1 0.5626 0.2650 -2.4777 38 1 0.9785 -2.0525 -6.1991 39 1 6.7654 -1.6691 -9.3362 40 1 7.2294 -0.1200 -7.4693 41 1 5.5067 0.3088 -5.7761 42 1 0.4199 -2.1511 -3.8307 43 1 1.9636 -2.6414 -4.5750 44 1 3.0067 -2.9025 -2.3792 45 1 1.4727 -3.8064 -2.3686 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001506831578.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:03:40 Heat of formation + Delta-G solvation = 66.209211 kcal Electronic energy + Delta-G solvation = -30175.500464 eV Core-core repulsion = 26003.295866 eV Total energy + Delta-G solvation = -4172.204598 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -43.07048 -41.28651 -39.55828 -38.88695 -37.09841 -35.74673 -34.42858 -34.24495 -32.44869 -31.92366 -30.78282 -29.94729 -28.36859 -26.47445 -25.87071 -25.19346 -24.55319 -23.94199 -22.74255 -21.14863 -20.48933 -19.38319 -19.19750 -18.39287 -17.93664 -17.68207 -17.19150 -17.02202 -16.84830 -16.49073 -16.33419 -16.06962 -15.69844 -15.37077 -15.22375 -15.08392 -14.55846 -14.45854 -14.21096 -13.97286 -13.76477 -13.60836 -13.56513 -13.15251 -12.94057 -12.84847 -12.65774 -12.42848 -12.36664 -12.12066 -12.01428 -11.82660 -11.62441 -11.57949 -11.53602 -11.18831 -11.00718 -10.92282 -10.78531 -9.66699 -9.28847 -8.98671 -7.90767 -5.19125 -0.85516 -0.10176 0.26820 0.92694 1.48464 1.49186 1.59218 1.66725 1.87092 2.17833 2.58012 2.79896 3.03870 3.24785 3.37605 3.43177 3.53490 3.57602 3.70172 3.94720 3.95271 3.98343 4.04376 4.13254 4.15599 4.27308 4.32494 4.41404 4.51414 4.62744 4.66773 4.74861 4.80034 4.83670 4.85388 4.98622 5.01899 5.11464 5.13459 5.27248 5.32862 5.54127 5.66326 6.10008 6.23749 6.26067 6.30291 6.31532 7.00607 7.37198 8.13312 8.37713 9.33061 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.019458 B = 0.002361 C = 0.002272 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1438.635365 B =11854.650958 C =12321.886097 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.176 3.824 3 H 0.060 0.940 4 N -0.733 5.733 5 C -0.235 4.235 6 H 0.078 0.922 7 C -0.079 4.079 8 N -0.970 5.970 9 Si 0.971 3.029 10 H -0.265 1.265 11 H -0.295 1.295 12 H -0.295 1.295 13 C 0.090 3.910 14 H 0.037 0.963 15 C 0.095 3.905 16 N -0.605 5.605 17 C 0.601 3.399 18 O -0.578 6.578 19 C -0.293 4.293 20 C 0.108 3.892 21 N -0.286 5.286 22 N -0.188 5.188 23 N -0.254 5.254 24 C 0.135 3.865 25 C -0.117 4.117 26 C -0.068 4.068 27 C 0.097 3.903 28 C 0.072 3.928 29 C 0.040 3.960 30 O -0.379 6.379 31 H 0.036 0.964 32 H 0.072 0.928 33 H 0.046 0.954 34 H 0.375 0.625 35 H 0.249 0.751 36 H 0.091 0.909 37 H 0.099 0.901 38 H 0.239 0.761 39 H 0.263 0.737 40 H 0.209 0.791 41 H 0.162 0.838 42 H 0.108 0.892 43 H 0.111 0.889 44 H 0.040 0.960 45 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.318 0.279 -28.110 28.441 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.067 3.933 3 H 0.078 0.922 4 N -0.373 5.373 5 C -0.367 4.367 6 H 0.096 0.904 7 C -0.271 4.271 8 N -0.621 5.621 9 Si 0.801 3.199 10 H -0.189 1.189 11 H -0.222 1.222 12 H -0.222 1.222 13 C 0.031 3.969 14 H 0.055 0.945 15 C -0.028 4.028 16 N -0.337 5.337 17 C 0.391 3.609 18 O -0.459 6.459 19 C -0.310 4.310 20 C -0.072 4.072 21 N -0.110 5.110 22 N -0.053 5.053 23 N -0.066 5.066 24 C -0.057 4.057 25 C -0.141 4.141 26 C -0.096 4.096 27 C -0.030 4.030 28 C -0.050 4.050 29 C -0.037 4.037 30 O -0.298 6.298 31 H 0.055 0.945 32 H 0.091 0.909 33 H 0.065 0.935 34 H 0.207 0.793 35 H 0.058 0.942 36 H 0.110 0.890 37 H 0.117 0.883 38 H 0.255 0.745 39 H 0.278 0.722 40 H 0.226 0.774 41 H 0.179 0.821 42 H 0.126 0.874 43 H 0.129 0.871 44 H 0.058 0.942 45 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 3.676 -0.568 -29.478 29.712 hybrid contribution 0.800 1.010 2.366 2.694 sum 4.476 0.442 -27.112 27.483 Atomic orbital electron populations 1.22218 0.96764 1.01246 1.00593 1.20436 0.93974 0.94498 0.84351 0.92249 1.42550 1.78277 1.10464 1.06030 1.19690 1.34553 0.94208 0.88260 0.90436 1.25555 1.03184 0.96899 1.01449 1.69849 1.52772 1.10276 1.29226 0.85093 0.76680 0.78250 0.79879 1.18914 1.22231 1.22228 1.22570 0.95894 0.83855 0.94597 0.94452 1.22284 1.02621 0.95016 0.82846 1.47992 1.54337 1.13691 1.17702 1.17160 0.76879 0.84888 0.81957 1.90768 1.52100 1.20750 1.82299 1.19627 0.96370 1.12570 1.02447 1.24786 1.00828 0.91388 0.90247 1.77605 0.87104 1.24173 1.22159 1.51085 1.10082 1.28573 1.15528 1.75944 0.98210 1.23124 1.09355 1.25373 0.92328 0.89641 0.98316 1.22341 1.02323 0.97297 0.92173 1.21289 0.89290 0.97667 1.01339 1.20109 0.97119 0.95044 0.90728 1.22953 1.02281 0.80262 0.99514 1.23236 0.99092 0.96007 0.85379 1.88056 1.67608 1.25843 1.48286 0.94475 0.90891 0.93465 0.79347 0.94203 0.89036 0.88293 0.74536 0.72178 0.77432 0.82067 0.87395 0.87119 0.94173 0.85351 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.26 9.06 71.98 0.65 -4.61 16 2 C 0.18 7.02 2.77 44.99 0.12 7.15 16 3 H 0.06 2.35 8.08 -2.38 -0.02 2.33 16 4 N -0.73 -37.87 5.10 -322.95 -1.65 -39.52 16 5 C -0.24 -13.22 9.93 84.03 0.83 -12.38 16 6 H 0.08 4.16 7.83 -2.91 -0.02 4.14 16 7 C -0.08 -4.61 5.50 84.87 0.47 -4.14 16 8 N -0.97 -60.61 13.06 21.65 0.28 -60.32 16 9 Si 0.97 46.82 29.55 68.60 2.03 48.85 16 10 H -0.26 -11.93 7.11 99.48 0.71 -11.22 16 11 H -0.29 -14.24 7.11 99.48 0.71 -13.53 16 12 H -0.29 -14.21 7.11 99.48 0.71 -13.51 16 13 C 0.09 3.08 2.61 30.69 0.08 3.16 16 14 H 0.04 1.45 8.14 -2.38 -0.02 1.43 16 15 C 0.10 2.65 5.84 86.35 0.50 3.15 16 16 N -0.61 -14.96 3.01 -821.24 -2.48 -17.43 16 17 C 0.60 16.48 7.58 86.44 0.66 17.13 16 18 O -0.58 -19.57 16.53 -4.37 -0.07 -19.64 16 19 C -0.29 -6.93 5.31 -19.93 -0.11 -7.04 16 20 C 0.11 2.10 9.56 85.33 0.82 2.91 16 21 N -0.29 -6.85 12.61 -56.63 -0.71 -7.56 16 22 N -0.19 -4.37 5.25 -51.28 -0.27 -4.64 16 23 N -0.25 -4.50 11.96 -57.12 -0.68 -5.18 16 24 C 0.13 0.89 11.28 85.20 0.96 1.85 16 25 C -0.12 -0.75 10.04 22.24 0.22 -0.53 16 26 C -0.07 -1.10 10.08 22.29 0.22 -0.88 16 27 C 0.10 2.20 6.84 39.42 0.27 2.47 16 28 C 0.07 1.33 5.53 86.50 0.48 1.81 16 29 C 0.04 0.96 7.00 72.22 0.51 1.46 16 30 O -0.38 -12.57 9.24 -148.98 -1.38 -13.94 16 31 H 0.04 1.41 8.14 -2.39 -0.02 1.39 16 32 H 0.07 2.02 6.42 -2.39 -0.02 2.00 16 33 H 0.05 1.77 7.55 -2.39 -0.02 1.75 16 34 H 0.37 21.21 7.59 -92.70 -0.70 20.51 16 35 H 0.25 15.06 8.31 -92.70 -0.77 14.29 16 36 H 0.09 2.75 7.06 -2.39 -0.02 2.73 16 37 H 0.10 2.43 6.27 -2.39 -0.01 2.41 16 38 H 0.24 2.66 7.14 -2.91 -0.02 2.64 16 39 H 0.26 -1.39 8.06 -2.91 -0.02 -1.41 16 40 H 0.21 -0.62 8.06 -2.91 -0.02 -0.64 16 41 H 0.16 2.67 8.05 -2.92 -0.02 2.64 16 42 H 0.11 1.49 8.14 -2.39 -0.02 1.47 16 43 H 0.11 1.70 4.89 -2.39 -0.01 1.69 16 44 H 0.04 1.05 8.14 -2.39 -0.02 1.03 16 45 H 0.13 2.41 8.14 -2.39 -0.02 2.39 16 Total: -1.00 -85.44 372.59 2.10 -83.34 By element: Atomic # 1 Polarization: 24.20 SS G_CDS: 0.34 Total: 24.53 kcal Atomic # 6 Polarization: 4.83 SS G_CDS: 6.69 Total: 11.52 kcal Atomic # 7 Polarization: -129.15 SS G_CDS: -5.51 Total: -134.66 kcal Atomic # 8 Polarization: -32.14 SS G_CDS: -1.45 Total: -33.59 kcal Atomic # 14 Polarization: 46.82 SS G_CDS: 2.03 Total: 48.85 kcal Total: -85.44 2.10 -83.34 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001506831578.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 149.545 kcal (2) G-P(sol) polarization free energy of solvation -85.437 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.108 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.101 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.335 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.209 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds