Wall clock time and date at job start Wed Apr 1 2020 03:59:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08998 * 109.47142 * 2 1 4 4 N 1.46502 * 109.46908 * 119.99468 * 2 1 3 5 5 C 1.36938 * 120.00185 * 275.00069 * 4 2 1 6 6 H 1.08006 * 119.99998 * 359.97438 * 5 4 2 7 7 C 1.38812 * 120.00418 * 179.97438 * 5 4 2 8 8 N 1.31622 * 119.99769 * 0.02562 * 7 5 4 9 9 Si 1.86795 * 120.00238 * 180.02562 * 7 5 4 10 10 H 1.48498 * 109.47083 * 90.00016 * 9 7 5 11 11 H 1.48505 * 109.47020 * 210.00028 * 9 7 5 12 12 H 1.48496 * 109.47314 * 329.99928 * 9 7 5 13 13 C 1.52994 * 109.47423 * 239.99431 * 2 1 3 14 14 H 1.08996 * 109.51275 * 184.90192 * 13 2 1 15 15 C 1.52876 * 109.62550 * 64.90736 * 13 2 1 16 16 N 1.47153 * 108.61371 * 187.89840 * 15 13 2 17 17 C 1.34770 * 120.98398 * 230.50541 * 16 15 13 18 18 O 1.21578 * 119.99952 * 4.88772 * 17 16 15 19 19 C 1.47713 * 120.00186 * 184.88519 * 17 16 15 20 20 C 1.40257 * 119.87828 * 33.40767 * 19 17 16 21 21 C 1.36163 * 120.56035 * 180.02562 * 20 19 17 22 22 C 1.39910 * 119.97335 * 359.95998 * 21 20 19 23 23 N 1.34749 * 134.58986 * 180.02562 * 22 21 20 24 24 N 1.28646 * 109.29375 * 179.70838 * 23 22 21 25 25 N 1.28820 * 111.78804 * 0.45010 * 24 23 22 26 26 H 0.96998 * 125.94215 * 179.81635 * 25 24 23 27 27 C 1.37366 * 108.11615 * 359.55234 * 25 24 23 28 28 C 1.38611 * 134.89105 * 180.28423 * 27 25 24 29 29 C 1.47154 * 118.02920 * 50.22315 * 16 15 13 30 30 C 1.53288 * 108.39035 * 309.71871 * 29 16 15 31 31 O 1.42963 * 109.51304 * 305.00335 * 13 2 1 32 32 H 1.08995 * 109.46989 * 300.00703 * 1 2 3 33 33 H 1.09004 * 109.46750 * 60.00550 * 1 2 3 34 34 H 1.08998 * 109.47142 * 179.97438 * 1 2 3 35 35 H 0.96992 * 120.00192 * 94.99872 * 4 2 1 36 36 H 0.96996 * 120.00035 * 180.02562 * 8 7 5 37 37 H 1.09003 * 109.61682 * 68.07723 * 15 13 2 38 38 H 1.09001 * 109.52399 * 307.66848 * 15 13 2 39 39 H 1.08000 * 119.72394 * 0.02562 * 20 19 17 40 40 H 1.08001 * 120.01629 * 179.97438 * 21 20 19 41 41 H 1.08001 * 120.24749 * 359.94754 * 28 27 25 42 42 H 1.09000 * 109.67879 * 69.44900 * 29 16 15 43 43 H 1.09002 * 109.67890 * 189.99419 * 29 16 15 44 44 H 1.08998 * 109.51567 * 172.22465 * 30 29 16 45 45 H 1.08997 * 109.51675 * 292.38161 * 30 29 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0183 -0.6905 1.1963 5 6 2.1491 -0.0073 2.3758 6 1 1.8926 1.0407 2.4241 7 6 2.6112 -0.6617 3.5094 8 7 2.9242 -1.9388 3.4505 9 14 2.7889 0.2702 5.1186 10 1 1.5208 0.1790 5.8860 11 1 3.8931 -0.3231 5.9148 12 1 3.0940 1.6953 4.8343 13 6 2.0401 -0.7213 -1.2491 14 1 3.1265 -0.7983 -1.2069 15 6 1.6355 0.0641 -2.4968 16 7 1.9669 -0.7384 -3.6849 17 6 2.6711 -0.2096 -4.7050 18 8 3.1188 0.9172 -4.6148 19 6 2.8992 -0.9989 -5.9325 20 6 1.9201 -1.9000 -6.3757 21 6 2.1161 -2.6350 -7.5051 22 6 3.3018 -2.4936 -8.2341 23 7 3.7938 -3.0515 -9.3577 24 7 4.9544 -2.5551 -9.6058 25 7 5.3048 -1.6911 -8.7170 26 1 6.1384 -1.1953 -8.7025 27 6 4.2903 -1.5897 -7.7965 28 6 4.0841 -0.8446 -6.6460 29 6 1.5119 -2.1373 -3.7233 30 6 1.9271 -2.8171 -2.4137 31 8 1.4705 -2.0312 -1.3101 32 1 -0.3633 0.5139 0.8899 33 1 -0.3633 0.5138 -0.8901 34 1 -0.3633 -1.0276 -0.0005 35 1 2.2490 -1.6316 1.1528 36 1 3.2468 -2.3961 4.2427 37 1 2.1801 1.0078 -2.5277 38 1 0.5634 0.2590 -2.4727 39 1 1.0030 -2.0120 -5.8166 40 1 1.3564 -3.3266 -7.8382 41 1 4.8379 -0.1505 -6.3049 42 1 0.4271 -2.1678 -3.8250 43 1 1.9746 -2.6508 -4.5662 44 1 1.4817 -3.8106 -2.3620 45 1 3.0131 -2.9017 -2.3757 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001506854838.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:59:22 Heat of formation + Delta-G solvation = 69.854952 kcal Electronic energy + Delta-G solvation = -29973.103388 eV Core-core repulsion = 25801.056881 eV Total energy + Delta-G solvation = -4172.046507 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -43.70508 -40.84348 -38.85826 -37.72861 -35.63286 -34.69931 -34.34632 -32.61641 -31.39864 -31.05033 -30.21814 -28.56628 -27.44428 -25.46044 -24.42946 -24.17627 -23.34888 -23.01051 -22.27311 -20.18450 -19.66615 -18.86289 -18.81697 -17.28782 -16.82755 -16.77514 -16.58636 -16.05493 -15.66851 -15.43864 -15.27596 -14.71660 -14.57834 -14.48494 -14.24730 -13.63302 -13.45648 -13.32051 -12.96617 -12.80579 -12.69236 -12.55885 -12.35354 -12.08945 -11.89111 -11.73059 -11.37262 -11.30971 -11.16651 -10.86142 -10.75649 -10.59682 -10.37642 -10.19426 -9.93994 -9.88499 -9.67301 -9.45330 -8.98826 -8.90871 -8.59603 -6.94907 -5.74824 -3.03663 -0.15221 0.61925 1.64914 1.94284 2.44048 2.61105 3.14622 3.44155 3.46416 3.49379 3.50861 3.91738 3.97289 4.05651 4.37140 4.46615 4.55669 4.56973 4.64972 4.73433 4.85836 5.02038 5.10323 5.23793 5.27159 5.36676 5.42838 5.57573 5.57663 5.61611 5.66207 5.66704 5.75629 5.92258 5.95560 5.97336 6.14413 6.24732 6.27737 6.43411 6.62265 6.79802 7.06072 7.14403 7.42525 7.70574 7.73975 7.80922 8.43374 9.55308 10.12613 10.49076 11.47575 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.023605 B = 0.002154 C = 0.002137 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1185.902449 B =12995.035075 C =13102.115174 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.185 3.815 3 H 0.060 0.940 4 N -0.719 5.719 5 C -0.239 4.239 6 H 0.070 0.930 7 C -0.013 4.013 8 N -0.931 5.931 9 Si 0.906 3.094 10 H -0.290 1.290 11 H -0.292 1.292 12 H -0.282 1.282 13 C 0.076 3.924 14 H 0.064 0.936 15 C 0.082 3.918 16 N -0.603 5.603 17 C 0.561 3.439 18 O -0.530 6.530 19 C -0.093 4.093 20 C -0.098 4.098 21 C -0.053 4.053 22 C 0.027 3.973 23 N -0.251 5.251 24 N -0.008 5.008 25 N -0.411 5.411 26 H 0.455 0.545 27 C 0.019 3.981 28 C -0.039 4.039 29 C 0.056 3.944 30 C 0.045 3.955 31 O -0.357 6.357 32 H 0.052 0.948 33 H 0.034 0.966 34 H 0.057 0.943 35 H 0.389 0.611 36 H 0.254 0.746 37 H 0.102 0.898 38 H 0.085 0.915 39 H 0.152 0.848 40 H 0.148 0.852 41 H 0.145 0.855 42 H 0.084 0.916 43 H 0.104 0.896 44 H 0.106 0.894 45 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.502 -1.472 -25.026 25.074 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.074 3.926 3 H 0.077 0.923 4 N -0.360 5.360 5 C -0.370 4.370 6 H 0.088 0.912 7 C -0.209 4.209 8 N -0.579 5.579 9 Si 0.737 3.263 10 H -0.217 1.217 11 H -0.218 1.218 12 H -0.208 1.208 13 C 0.016 3.984 14 H 0.082 0.918 15 C -0.040 4.040 16 N -0.336 5.336 17 C 0.349 3.651 18 O -0.407 6.407 19 C -0.101 4.101 20 C -0.119 4.119 21 C -0.075 4.075 22 C -0.099 4.099 23 N -0.127 5.127 24 N 0.010 4.990 25 N -0.140 5.140 26 H 0.302 0.698 27 C -0.101 4.101 28 C -0.061 4.061 29 C -0.067 4.067 30 C -0.033 4.033 31 O -0.275 6.275 32 H 0.071 0.929 33 H 0.053 0.947 34 H 0.076 0.924 35 H 0.223 0.777 36 H 0.064 0.936 37 H 0.120 0.880 38 H 0.103 0.897 39 H 0.170 0.830 40 H 0.166 0.834 41 H 0.163 0.837 42 H 0.102 0.898 43 H 0.121 0.879 44 H 0.124 0.876 45 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -0.034 -1.591 -25.981 26.029 hybrid contribution 0.683 1.009 1.623 2.029 sum 0.649 -0.582 -24.358 24.373 Atomic orbital electron populations 1.22421 0.98626 1.01655 0.99571 1.20192 0.92843 0.94608 0.84931 0.92272 1.42348 1.77865 1.10967 1.04864 1.19244 1.36588 0.93858 0.87334 0.91159 1.24741 1.02191 0.95978 0.98028 1.69677 1.50800 1.08652 1.28762 0.86205 0.77274 0.78791 0.84006 1.21745 1.21844 1.20779 1.22897 0.97740 0.83064 0.94664 0.91843 1.22492 1.02239 0.95867 0.83423 1.48030 1.54185 1.12831 1.18515 1.18079 0.78174 0.86204 0.82619 1.90820 1.49788 1.19074 1.81057 1.19718 0.95214 0.98747 0.96370 1.21225 0.99775 0.94746 0.96194 1.19972 0.94504 0.99879 0.93121 1.20115 0.96877 0.97549 0.95345 1.75404 1.02176 1.21293 1.13809 1.78009 1.09225 1.00350 1.11398 1.44908 1.17898 1.32970 1.18206 0.69758 1.19623 0.91024 1.03240 0.96206 1.20032 0.97734 0.97482 0.90892 1.23085 1.00981 0.81785 1.00834 1.22936 0.99621 0.95319 0.85443 1.88117 1.67610 1.25620 1.46137 0.92865 0.94664 0.92397 0.77672 0.93565 0.87965 0.89700 0.83041 0.83440 0.83685 0.89799 0.87862 0.87637 0.92808 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.86 9.06 37.16 0.34 -2.53 16 2 C 0.19 3.57 2.77 -67.93 -0.19 3.38 16 3 H 0.06 1.14 8.08 -51.93 -0.42 0.72 16 4 N -0.72 -17.85 5.10 -53.42 -0.27 -18.12 16 5 C -0.24 -6.56 9.93 -15.06 -0.15 -6.71 16 6 H 0.07 1.86 7.83 -52.48 -0.41 1.45 16 7 C -0.01 -0.38 5.50 -17.43 -0.10 -0.48 16 8 N -0.93 -28.06 13.06 55.49 0.72 -27.34 16 9 Si 0.91 22.30 29.55 -169.99 -5.02 17.28 16 10 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 11 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 12 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 13 C 0.08 1.22 2.59 -26.80 -0.07 1.15 16 14 H 0.06 1.13 8.14 -51.93 -0.42 0.70 16 15 C 0.08 1.09 5.82 -3.75 -0.02 1.07 16 16 N -0.60 -6.86 3.03 -173.69 -0.53 -7.39 16 17 C 0.56 6.74 7.41 -12.39 -0.09 6.65 16 18 O -0.53 -8.16 16.23 5.30 0.09 -8.07 16 19 C -0.09 -0.86 5.36 -104.92 -0.56 -1.42 16 20 C -0.10 -0.68 7.29 -39.57 -0.29 -0.96 16 21 C -0.05 -0.37 10.03 -39.70 -0.40 -0.77 16 22 C 0.03 0.25 7.36 -84.95 -0.63 -0.38 16 23 N -0.25 -2.69 12.42 32.09 0.40 -2.30 16 24 N -0.01 -0.07 13.28 60.35 0.80 0.73 16 25 N -0.41 -2.81 7.08 32.31 0.23 -2.58 16 26 H 0.46 1.29 8.96 -190.23 -1.71 -0.41 16 27 C 0.02 0.16 7.40 -84.24 -0.62 -0.46 16 28 C -0.04 -0.33 9.62 -39.10 -0.38 -0.70 16 29 C 0.06 0.48 4.90 -3.54 -0.02 0.46 16 30 C 0.04 0.50 6.98 37.31 0.26 0.76 16 31 O -0.36 -5.64 9.24 -35.23 -0.33 -5.96 16 32 H 0.05 1.01 8.14 -51.93 -0.42 0.58 16 33 H 0.03 0.50 6.42 -51.93 -0.33 0.17 16 34 H 0.06 1.07 7.56 -51.93 -0.39 0.68 16 35 H 0.39 10.45 7.58 -40.82 -0.31 10.14 16 36 H 0.25 7.43 8.31 -40.82 -0.34 7.09 16 37 H 0.10 1.45 7.06 -51.93 -0.37 1.08 16 38 H 0.08 1.06 6.25 -51.93 -0.32 0.73 16 39 H 0.15 0.75 5.73 -52.49 -0.30 0.45 16 40 H 0.15 0.69 8.06 -52.49 -0.42 0.27 16 41 H 0.15 1.11 7.96 -52.49 -0.42 0.69 16 42 H 0.08 0.60 7.94 -51.93 -0.41 0.19 16 43 H 0.10 0.67 4.56 -51.93 -0.24 0.43 16 44 H 0.11 0.95 8.14 -51.93 -0.42 0.53 16 45 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 LS Contribution 367.21 15.07 5.53 5.53 Total: -1.00 -35.20 367.21 -8.16 -43.37 By element: Atomic # 1 Polarization: 12.67 SS G_CDS: -6.88 Total: 5.79 kcal Atomic # 6 Polarization: 1.97 SS G_CDS: -2.91 Total: -0.94 kcal Atomic # 7 Polarization: -58.35 SS G_CDS: 1.36 Total: -56.99 kcal Atomic # 8 Polarization: -13.80 SS G_CDS: -0.24 Total: -14.04 kcal Atomic # 14 Polarization: 22.30 SS G_CDS: -5.02 Total: 17.28 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -35.20 -8.16 -43.37 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001506854838.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.222 kcal (2) G-P(sol) polarization free energy of solvation -35.204 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.018 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.163 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.367 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.855 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds