Wall clock time and date at job start Wed Apr 1 2020 03:59:22
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53002 * 1
3 3 H 1.08998 * 109.47142 * 2 1
4 4 N 1.46502 * 109.46908 * 119.99468 * 2 1 3
5 5 C 1.36938 * 120.00185 * 275.00069 * 4 2 1
6 6 H 1.08006 * 119.99998 * 359.97438 * 5 4 2
7 7 C 1.38812 * 120.00418 * 179.97438 * 5 4 2
8 8 N 1.31622 * 119.99769 * 0.02562 * 7 5 4
9 9 Si 1.86795 * 120.00238 * 180.02562 * 7 5 4
10 10 H 1.48498 * 109.47083 * 90.00016 * 9 7 5
11 11 H 1.48505 * 109.47020 * 210.00028 * 9 7 5
12 12 H 1.48496 * 109.47314 * 329.99928 * 9 7 5
13 13 C 1.52994 * 109.47423 * 239.99431 * 2 1 3
14 14 H 1.08996 * 109.51275 * 184.90192 * 13 2 1
15 15 C 1.52876 * 109.62550 * 64.90736 * 13 2 1
16 16 N 1.47153 * 108.61371 * 187.89840 * 15 13 2
17 17 C 1.34770 * 120.98398 * 230.50541 * 16 15 13
18 18 O 1.21578 * 119.99952 * 4.88772 * 17 16 15
19 19 C 1.47713 * 120.00186 * 184.88519 * 17 16 15
20 20 C 1.40257 * 119.87828 * 33.40767 * 19 17 16
21 21 C 1.36163 * 120.56035 * 180.02562 * 20 19 17
22 22 C 1.39910 * 119.97335 * 359.95998 * 21 20 19
23 23 N 1.34749 * 134.58986 * 180.02562 * 22 21 20
24 24 N 1.28646 * 109.29375 * 179.70838 * 23 22 21
25 25 N 1.28820 * 111.78804 * 0.45010 * 24 23 22
26 26 H 0.96998 * 125.94215 * 179.81635 * 25 24 23
27 27 C 1.37366 * 108.11615 * 359.55234 * 25 24 23
28 28 C 1.38611 * 134.89105 * 180.28423 * 27 25 24
29 29 C 1.47154 * 118.02920 * 50.22315 * 16 15 13
30 30 C 1.53288 * 108.39035 * 309.71871 * 29 16 15
31 31 O 1.42963 * 109.51304 * 305.00335 * 13 2 1
32 32 H 1.08995 * 109.46989 * 300.00703 * 1 2 3
33 33 H 1.09004 * 109.46750 * 60.00550 * 1 2 3
34 34 H 1.08998 * 109.47142 * 179.97438 * 1 2 3
35 35 H 0.96992 * 120.00192 * 94.99872 * 4 2 1
36 36 H 0.96996 * 120.00035 * 180.02562 * 8 7 5
37 37 H 1.09003 * 109.61682 * 68.07723 * 15 13 2
38 38 H 1.09001 * 109.52399 * 307.66848 * 15 13 2
39 39 H 1.08000 * 119.72394 * 0.02562 * 20 19 17
40 40 H 1.08001 * 120.01629 * 179.97438 * 21 20 19
41 41 H 1.08001 * 120.24749 * 359.94754 * 28 27 25
42 42 H 1.09000 * 109.67879 * 69.44900 * 29 16 15
43 43 H 1.09002 * 109.67890 * 189.99419 * 29 16 15
44 44 H 1.08998 * 109.51567 * 172.22465 * 30 29 16
45 45 H 1.08997 * 109.51675 * 292.38161 * 30 29 16
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8933 1.0276 0.0000
4 7 2.0183 -0.6905 1.1963
5 6 2.1491 -0.0073 2.3758
6 1 1.8926 1.0407 2.4241
7 6 2.6112 -0.6617 3.5094
8 7 2.9242 -1.9388 3.4505
9 14 2.7889 0.2702 5.1186
10 1 1.5208 0.1790 5.8860
11 1 3.8931 -0.3231 5.9148
12 1 3.0940 1.6953 4.8343
13 6 2.0401 -0.7213 -1.2491
14 1 3.1265 -0.7983 -1.2069
15 6 1.6355 0.0641 -2.4968
16 7 1.9669 -0.7384 -3.6849
17 6 2.6711 -0.2096 -4.7050
18 8 3.1188 0.9172 -4.6148
19 6 2.8992 -0.9989 -5.9325
20 6 1.9201 -1.9000 -6.3757
21 6 2.1161 -2.6350 -7.5051
22 6 3.3018 -2.4936 -8.2341
23 7 3.7938 -3.0515 -9.3577
24 7 4.9544 -2.5551 -9.6058
25 7 5.3048 -1.6911 -8.7170
26 1 6.1384 -1.1953 -8.7025
27 6 4.2903 -1.5897 -7.7965
28 6 4.0841 -0.8446 -6.6460
29 6 1.5119 -2.1373 -3.7233
30 6 1.9271 -2.8171 -2.4137
31 8 1.4705 -2.0312 -1.3101
32 1 -0.3633 0.5139 0.8899
33 1 -0.3633 0.5138 -0.8901
34 1 -0.3633 -1.0276 -0.0005
35 1 2.2490 -1.6316 1.1528
36 1 3.2468 -2.3961 4.2427
37 1 2.1801 1.0078 -2.5277
38 1 0.5634 0.2590 -2.4727
39 1 1.0030 -2.0120 -5.8166
40 1 1.3564 -3.3266 -7.8382
41 1 4.8379 -0.1505 -6.3049
42 1 0.4271 -2.1678 -3.8250
43 1 1.9746 -2.6508 -4.5662
44 1 1.4817 -3.8106 -2.3620
45 1 3.0131 -2.9017 -2.3757
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001506854838.mol2 45
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 03:59:22
Heat of formation + Delta-G solvation = 69.854952 kcal
Electronic energy + Delta-G solvation = -29973.103388 eV
Core-core repulsion = 25801.056881 eV
Total energy + Delta-G solvation = -4172.046507 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 345.159 amu
Computer time = 0.93 seconds
Orbital eigenvalues (eV)
-43.70508 -40.84348 -38.85826 -37.72861 -35.63286 -34.69931 -34.34632 -32.61641
-31.39864 -31.05033 -30.21814 -28.56628 -27.44428 -25.46044 -24.42946 -24.17627
-23.34888 -23.01051 -22.27311 -20.18450 -19.66615 -18.86289 -18.81697 -17.28782
-16.82755 -16.77514 -16.58636 -16.05493 -15.66851 -15.43864 -15.27596 -14.71660
-14.57834 -14.48494 -14.24730 -13.63302 -13.45648 -13.32051 -12.96617 -12.80579
-12.69236 -12.55885 -12.35354 -12.08945 -11.89111 -11.73059 -11.37262 -11.30971
-11.16651 -10.86142 -10.75649 -10.59682 -10.37642 -10.19426 -9.93994 -9.88499
-9.67301 -9.45330 -8.98826 -8.90871 -8.59603 -6.94907 -5.74824 -3.03663
-0.15221 0.61925 1.64914 1.94284 2.44048 2.61105 3.14622 3.44155
3.46416 3.49379 3.50861 3.91738 3.97289 4.05651 4.37140 4.46615
4.55669 4.56973 4.64972 4.73433 4.85836 5.02038 5.10323 5.23793
5.27159 5.36676 5.42838 5.57573 5.57663 5.61611 5.66207 5.66704
5.75629 5.92258 5.95560 5.97336 6.14413 6.24732 6.27737 6.43411
6.62265 6.79802 7.06072 7.14403 7.42525 7.70574 7.73975 7.80922
8.43374 9.55308 10.12613 10.49076 11.47575
Molecular weight = 345.16amu
Principal moments of inertia in cm(-1)
A = 0.023605 B = 0.002154 C = 0.002137
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1185.902449 B =12995.035075 C =13102.115174
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.163 4.163
2 C 0.185 3.815
3 H 0.060 0.940
4 N -0.719 5.719
5 C -0.239 4.239
6 H 0.070 0.930
7 C -0.013 4.013
8 N -0.931 5.931
9 Si 0.906 3.094
10 H -0.290 1.290
11 H -0.292 1.292
12 H -0.282 1.282
13 C 0.076 3.924
14 H 0.064 0.936
15 C 0.082 3.918
16 N -0.603 5.603
17 C 0.561 3.439
18 O -0.530 6.530
19 C -0.093 4.093
20 C -0.098 4.098
21 C -0.053 4.053
22 C 0.027 3.973
23 N -0.251 5.251
24 N -0.008 5.008
25 N -0.411 5.411
26 H 0.455 0.545
27 C 0.019 3.981
28 C -0.039 4.039
29 C 0.056 3.944
30 C 0.045 3.955
31 O -0.357 6.357
32 H 0.052 0.948
33 H 0.034 0.966
34 H 0.057 0.943
35 H 0.389 0.611
36 H 0.254 0.746
37 H 0.102 0.898
38 H 0.085 0.915
39 H 0.152 0.848
40 H 0.148 0.852
41 H 0.145 0.855
42 H 0.084 0.916
43 H 0.104 0.896
44 H 0.106 0.894
45 H 0.054 0.946
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -0.502 -1.472 -25.026 25.074
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.223 4.223
2 C 0.074 3.926
3 H 0.077 0.923
4 N -0.360 5.360
5 C -0.370 4.370
6 H 0.088 0.912
7 C -0.209 4.209
8 N -0.579 5.579
9 Si 0.737 3.263
10 H -0.217 1.217
11 H -0.218 1.218
12 H -0.208 1.208
13 C 0.016 3.984
14 H 0.082 0.918
15 C -0.040 4.040
16 N -0.336 5.336
17 C 0.349 3.651
18 O -0.407 6.407
19 C -0.101 4.101
20 C -0.119 4.119
21 C -0.075 4.075
22 C -0.099 4.099
23 N -0.127 5.127
24 N 0.010 4.990
25 N -0.140 5.140
26 H 0.302 0.698
27 C -0.101 4.101
28 C -0.061 4.061
29 C -0.067 4.067
30 C -0.033 4.033
31 O -0.275 6.275
32 H 0.071 0.929
33 H 0.053 0.947
34 H 0.076 0.924
35 H 0.223 0.777
36 H 0.064 0.936
37 H 0.120 0.880
38 H 0.103 0.897
39 H 0.170 0.830
40 H 0.166 0.834
41 H 0.163 0.837
42 H 0.102 0.898
43 H 0.121 0.879
44 H 0.124 0.876
45 H 0.072 0.928
Dipole moment (debyes) X Y Z Total
from point charges -0.034 -1.591 -25.981 26.029
hybrid contribution 0.683 1.009 1.623 2.029
sum 0.649 -0.582 -24.358 24.373
Atomic orbital electron populations
1.22421 0.98626 1.01655 0.99571 1.20192 0.92843 0.94608 0.84931
0.92272 1.42348 1.77865 1.10967 1.04864 1.19244 1.36588 0.93858
0.87334 0.91159 1.24741 1.02191 0.95978 0.98028 1.69677 1.50800
1.08652 1.28762 0.86205 0.77274 0.78791 0.84006 1.21745 1.21844
1.20779 1.22897 0.97740 0.83064 0.94664 0.91843 1.22492 1.02239
0.95867 0.83423 1.48030 1.54185 1.12831 1.18515 1.18079 0.78174
0.86204 0.82619 1.90820 1.49788 1.19074 1.81057 1.19718 0.95214
0.98747 0.96370 1.21225 0.99775 0.94746 0.96194 1.19972 0.94504
0.99879 0.93121 1.20115 0.96877 0.97549 0.95345 1.75404 1.02176
1.21293 1.13809 1.78009 1.09225 1.00350 1.11398 1.44908 1.17898
1.32970 1.18206 0.69758 1.19623 0.91024 1.03240 0.96206 1.20032
0.97734 0.97482 0.90892 1.23085 1.00981 0.81785 1.00834 1.22936
0.99621 0.95319 0.85443 1.88117 1.67610 1.25620 1.46137 0.92865
0.94664 0.92397 0.77672 0.93565 0.87965 0.89700 0.83041 0.83440
0.83685 0.89799 0.87862 0.87637 0.92808
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.16 -2.86 9.06 37.16 0.34 -2.53 16
2 C 0.19 3.57 2.77 -67.93 -0.19 3.38 16
3 H 0.06 1.14 8.08 -51.93 -0.42 0.72 16
4 N -0.72 -17.85 5.10 -53.42 -0.27 -18.12 16
5 C -0.24 -6.56 9.93 -15.06 -0.15 -6.71 16
6 H 0.07 1.86 7.83 -52.48 -0.41 1.45 16
7 C -0.01 -0.38 5.50 -17.43 -0.10 -0.48 16
8 N -0.93 -28.06 13.06 55.49 0.72 -27.34 16
9 Si 0.91 22.30 29.55 -169.99 -5.02 17.28 16
10 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16
11 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16
12 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16
13 C 0.08 1.22 2.59 -26.80 -0.07 1.15 16
14 H 0.06 1.13 8.14 -51.93 -0.42 0.70 16
15 C 0.08 1.09 5.82 -3.75 -0.02 1.07 16
16 N -0.60 -6.86 3.03 -173.69 -0.53 -7.39 16
17 C 0.56 6.74 7.41 -12.39 -0.09 6.65 16
18 O -0.53 -8.16 16.23 5.30 0.09 -8.07 16
19 C -0.09 -0.86 5.36 -104.92 -0.56 -1.42 16
20 C -0.10 -0.68 7.29 -39.57 -0.29 -0.96 16
21 C -0.05 -0.37 10.03 -39.70 -0.40 -0.77 16
22 C 0.03 0.25 7.36 -84.95 -0.63 -0.38 16
23 N -0.25 -2.69 12.42 32.09 0.40 -2.30 16
24 N -0.01 -0.07 13.28 60.35 0.80 0.73 16
25 N -0.41 -2.81 7.08 32.31 0.23 -2.58 16
26 H 0.46 1.29 8.96 -190.23 -1.71 -0.41 16
27 C 0.02 0.16 7.40 -84.24 -0.62 -0.46 16
28 C -0.04 -0.33 9.62 -39.10 -0.38 -0.70 16
29 C 0.06 0.48 4.90 -3.54 -0.02 0.46 16
30 C 0.04 0.50 6.98 37.31 0.26 0.76 16
31 O -0.36 -5.64 9.24 -35.23 -0.33 -5.96 16
32 H 0.05 1.01 8.14 -51.93 -0.42 0.58 16
33 H 0.03 0.50 6.42 -51.93 -0.33 0.17 16
34 H 0.06 1.07 7.56 -51.93 -0.39 0.68 16
35 H 0.39 10.45 7.58 -40.82 -0.31 10.14 16
36 H 0.25 7.43 8.31 -40.82 -0.34 7.09 16
37 H 0.10 1.45 7.06 -51.93 -0.37 1.08 16
38 H 0.08 1.06 6.25 -51.93 -0.32 0.73 16
39 H 0.15 0.75 5.73 -52.49 -0.30 0.45 16
40 H 0.15 0.69 8.06 -52.49 -0.42 0.27 16
41 H 0.15 1.11 7.96 -52.49 -0.42 0.69 16
42 H 0.08 0.60 7.94 -51.93 -0.41 0.19 16
43 H 0.10 0.67 4.56 -51.93 -0.24 0.43 16
44 H 0.11 0.95 8.14 -51.93 -0.42 0.53 16
45 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16
LS Contribution 367.21 15.07 5.53 5.53
Total: -1.00 -35.20 367.21 -8.16 -43.37
By element:
Atomic # 1 Polarization: 12.67 SS G_CDS: -6.88 Total: 5.79 kcal
Atomic # 6 Polarization: 1.97 SS G_CDS: -2.91 Total: -0.94 kcal
Atomic # 7 Polarization: -58.35 SS G_CDS: 1.36 Total: -56.99 kcal
Atomic # 8 Polarization: -13.80 SS G_CDS: -0.24 Total: -14.04 kcal
Atomic # 14 Polarization: 22.30 SS G_CDS: -5.02 Total: 17.28 kcal
Total LS contribution 5.53 Total: 5.53 kcal
Total: -35.20 -8.16 -43.37 kcal
The number of atoms in the molecule is 45
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001506854838.mol2 45
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 113.222 kcal
(2) G-P(sol) polarization free energy of solvation -35.204 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.018 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.163 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.367 kcal
(6) G-S(sol) free energy of system = (1) + (5) 69.855 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.93 seconds