Wall clock time and date at job start Wed Apr 1 2020 03:59:19
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53002 * 1
3 3 H 1.08998 * 109.47142 * 2 1
4 4 N 1.46502 * 109.46908 * 119.99468 * 2 1 3
5 5 C 1.36938 * 120.00185 * 275.00069 * 4 2 1
6 6 H 1.08006 * 119.99998 * 359.97438 * 5 4 2
7 7 C 1.38812 * 120.00418 * 179.97438 * 5 4 2
8 8 N 1.31622 * 119.99769 * 0.02562 * 7 5 4
9 9 Si 1.86795 * 120.00238 * 180.02562 * 7 5 4
10 10 H 1.48498 * 109.47083 * 90.00016 * 9 7 5
11 11 H 1.48505 * 109.47020 * 210.00028 * 9 7 5
12 12 H 1.48496 * 109.47314 * 329.99928 * 9 7 5
13 13 C 1.52994 * 109.47423 * 239.99431 * 2 1 3
14 14 H 1.08996 * 109.51275 * 184.90192 * 13 2 1
15 15 C 1.52876 * 109.62550 * 64.90736 * 13 2 1
16 16 N 1.47153 * 108.61371 * 187.89840 * 15 13 2
17 17 C 1.34770 * 120.98398 * 230.50541 * 16 15 13
18 18 O 1.21578 * 119.99952 * 4.88772 * 17 16 15
19 19 C 1.47713 * 120.00186 * 184.88519 * 17 16 15
20 20 C 1.40257 * 119.87828 * 33.40767 * 19 17 16
21 21 C 1.36163 * 120.56035 * 180.02562 * 20 19 17
22 22 C 1.39910 * 119.97335 * 359.95998 * 21 20 19
23 23 N 1.34749 * 134.58986 * 180.02562 * 22 21 20
24 24 N 1.28646 * 109.29375 * 179.70838 * 23 22 21
25 25 N 1.28820 * 111.78804 * 0.45010 * 24 23 22
26 26 H 0.96998 * 125.94215 * 179.81635 * 25 24 23
27 27 C 1.37366 * 108.11615 * 359.55234 * 25 24 23
28 28 C 1.38611 * 134.89105 * 180.28423 * 27 25 24
29 29 C 1.47154 * 118.02920 * 50.22315 * 16 15 13
30 30 C 1.53288 * 108.39035 * 309.71871 * 29 16 15
31 31 O 1.42963 * 109.51304 * 305.00335 * 13 2 1
32 32 H 1.08995 * 109.46989 * 300.00703 * 1 2 3
33 33 H 1.09004 * 109.46750 * 60.00550 * 1 2 3
34 34 H 1.08998 * 109.47142 * 179.97438 * 1 2 3
35 35 H 0.96992 * 120.00192 * 94.99872 * 4 2 1
36 36 H 0.96996 * 120.00035 * 180.02562 * 8 7 5
37 37 H 1.09003 * 109.61682 * 68.07723 * 15 13 2
38 38 H 1.09001 * 109.52399 * 307.66848 * 15 13 2
39 39 H 1.08000 * 119.72394 * 0.02562 * 20 19 17
40 40 H 1.08001 * 120.01629 * 179.97438 * 21 20 19
41 41 H 1.08001 * 120.24749 * 359.94754 * 28 27 25
42 42 H 1.09000 * 109.67879 * 69.44900 * 29 16 15
43 43 H 1.09002 * 109.67890 * 189.99419 * 29 16 15
44 44 H 1.08998 * 109.51567 * 172.22465 * 30 29 16
45 45 H 1.08997 * 109.51675 * 292.38161 * 30 29 16
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8933 1.0276 0.0000
4 7 2.0183 -0.6905 1.1963
5 6 2.1491 -0.0073 2.3758
6 1 1.8926 1.0407 2.4241
7 6 2.6112 -0.6617 3.5094
8 7 2.9242 -1.9388 3.4505
9 14 2.7889 0.2702 5.1186
10 1 1.5208 0.1790 5.8860
11 1 3.8931 -0.3231 5.9148
12 1 3.0940 1.6953 4.8343
13 6 2.0401 -0.7213 -1.2491
14 1 3.1265 -0.7983 -1.2069
15 6 1.6355 0.0641 -2.4968
16 7 1.9669 -0.7384 -3.6849
17 6 2.6711 -0.2096 -4.7050
18 8 3.1188 0.9172 -4.6148
19 6 2.8992 -0.9989 -5.9325
20 6 1.9201 -1.9000 -6.3757
21 6 2.1161 -2.6350 -7.5051
22 6 3.3018 -2.4936 -8.2341
23 7 3.7938 -3.0515 -9.3577
24 7 4.9544 -2.5551 -9.6058
25 7 5.3048 -1.6911 -8.7170
26 1 6.1384 -1.1953 -8.7025
27 6 4.2903 -1.5897 -7.7965
28 6 4.0841 -0.8446 -6.6460
29 6 1.5119 -2.1373 -3.7233
30 6 1.9271 -2.8171 -2.4137
31 8 1.4705 -2.0312 -1.3101
32 1 -0.3633 0.5139 0.8899
33 1 -0.3633 0.5138 -0.8901
34 1 -0.3633 -1.0276 -0.0005
35 1 2.2490 -1.6316 1.1528
36 1 3.2468 -2.3961 4.2427
37 1 2.1801 1.0078 -2.5277
38 1 0.5634 0.2590 -2.4727
39 1 1.0030 -2.0120 -5.8166
40 1 1.3564 -3.3266 -7.8382
41 1 4.8379 -0.1505 -6.3049
42 1 0.4271 -2.1678 -3.8250
43 1 1.9746 -2.6508 -4.5662
44 1 1.4817 -3.8106 -2.3620
45 1 3.0131 -2.9017 -2.3757
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001506854838.mol2 45
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 03:59:19
Heat of formation + Delta-G solvation = 43.244958 kcal
Electronic energy + Delta-G solvation = -29974.257284 eV
Core-core repulsion = 25801.056881 eV
Total energy + Delta-G solvation = -4173.200403 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 345.159 amu
Computer time = 2.67 seconds
Orbital eigenvalues (eV)
-44.34746 -41.76967 -39.90560 -38.51197 -37.12479 -35.83534 -34.99510 -34.33631
-32.40714 -31.68276 -31.44270 -29.96519 -28.62471 -26.63464 -25.75103 -25.01597
-24.47516 -23.71600 -23.31404 -21.32755 -20.79527 -19.63184 -19.48068 -19.22163
-17.83191 -17.55142 -17.36141 -17.08509 -16.82488 -16.54763 -16.19307 -16.11794
-15.61060 -15.42085 -15.24066 -15.09379 -14.68511 -14.37691 -14.23554 -13.90045
-13.67028 -13.45962 -13.34603 -13.13887 -13.00561 -12.81825 -12.65805 -12.40857
-12.37902 -12.35350 -12.16271 -11.98495 -11.79536 -11.61926 -11.56432 -11.22351
-10.97119 -10.91097 -10.12594 -9.67404 -9.51880 -8.98525 -7.90906 -5.19099
-0.81366 0.03143 0.94380 1.34755 1.48375 1.49920 1.58015 1.64152
1.77769 2.47738 2.57893 2.81851 2.85878 3.23480 3.43090 3.45601
3.61284 3.76114 3.85057 3.92033 3.96374 3.98654 4.03911 4.15822
4.24941 4.35136 4.42086 4.50332 4.63723 4.66594 4.72587 4.77928
4.84497 4.86617 4.99660 5.03284 5.08407 5.13596 5.22620 5.30598
5.44780 5.53673 5.67021 5.78589 6.18362 6.28091 6.31825 6.89519
7.07793 7.37281 8.13777 8.37790 9.32621
Molecular weight = 345.16amu
Principal moments of inertia in cm(-1)
A = 0.023605 B = 0.002154 C = 0.002137
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1185.902449 B =12995.035075 C =13102.115174
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.149 4.149
2 C 0.175 3.825
3 H 0.058 0.942
4 N -0.733 5.733
5 C -0.237 4.237
6 H 0.077 0.923
7 C -0.078 4.078
8 N -0.969 5.969
9 Si 0.971 3.029
10 H -0.288 1.288
11 H -0.298 1.298
12 H -0.269 1.269
13 C 0.090 3.910
14 H 0.037 0.963
15 C 0.092 3.908
16 N -0.602 5.602
17 C 0.562 3.438
18 O -0.572 6.572
19 C -0.102 4.102
20 C -0.088 4.088
21 C -0.046 4.046
22 C 0.012 3.988
23 N -0.279 5.279
24 N -0.019 5.019
25 N -0.393 5.393
26 H 0.470 0.530
27 C 0.014 3.986
28 C -0.039 4.039
29 C 0.060 3.940
30 C 0.035 3.965
31 O -0.381 6.381
32 H 0.035 0.965
33 H 0.073 0.927
34 H 0.047 0.953
35 H 0.375 0.625
36 H 0.249 0.751
37 H 0.090 0.910
38 H 0.102 0.898
39 H 0.178 0.822
40 H 0.175 0.825
41 H 0.148 0.852
42 H 0.112 0.888
43 H 0.130 0.870
44 H 0.131 0.869
45 H 0.042 0.958
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -1.870 -1.435 -26.602 26.706
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.208 4.208
2 C 0.066 3.934
3 H 0.076 0.924
4 N -0.373 5.373
5 C -0.368 4.368
6 H 0.095 0.905
7 C -0.270 4.270
8 N -0.620 5.620
9 Si 0.800 3.200
10 H -0.215 1.215
11 H -0.224 1.224
12 H -0.194 1.194
13 C 0.031 3.969
14 H 0.055 0.945
15 C -0.031 4.031
16 N -0.334 5.334
17 C 0.351 3.649
18 O -0.452 6.452
19 C -0.109 4.109
20 C -0.109 4.109
21 C -0.068 4.068
22 C -0.114 4.114
23 N -0.154 5.154
24 N -0.001 5.001
25 N -0.125 5.125
26 H 0.321 0.679
27 C -0.106 4.106
28 C -0.062 4.062
29 C -0.061 4.061
30 C -0.042 4.042
31 O -0.299 6.299
32 H 0.054 0.946
33 H 0.092 0.908
34 H 0.066 0.934
35 H 0.207 0.793
36 H 0.058 0.942
37 H 0.109 0.891
38 H 0.119 0.881
39 H 0.195 0.805
40 H 0.192 0.808
41 H 0.165 0.835
42 H 0.130 0.870
43 H 0.148 0.852
44 H 0.149 0.851
45 H 0.060 0.940
Dipole moment (debyes) X Y Z Total
from point charges -1.412 -1.536 -27.613 27.692
hybrid contribution 1.140 0.990 2.010 2.514
sum -0.272 -0.545 -25.603 25.611
Atomic orbital electron populations
1.22217 0.96714 1.01291 1.00588 1.20443 0.94013 0.94472 0.84440
0.92406 1.42533 1.78306 1.10471 1.05991 1.19646 1.34690 0.94201
0.88312 0.90507 1.25542 1.03174 0.96905 1.01407 1.69836 1.52742
1.10231 1.29230 0.85171 0.76809 0.78051 0.79937 1.21497 1.22448
1.19430 1.22463 0.95951 0.83962 0.94552 0.94511 1.22223 1.02838
0.95043 0.82957 1.48079 1.53948 1.13769 1.17604 1.18465 0.77215
0.85870 0.83304 1.90800 1.51391 1.21012 1.81966 1.19585 0.96311
0.99535 0.95502 1.21400 0.99835 0.93520 0.96133 1.20280 0.94172
0.99873 0.92476 1.20545 0.97917 0.97646 0.95263 1.75373 1.02804
1.22382 1.14851 1.77947 1.09245 1.00925 1.12014 1.44942 1.18209
1.32110 1.17195 0.67905 1.19626 0.91353 1.03307 0.96337 1.20056
0.97864 0.97422 0.90819 1.23305 1.02834 0.79933 1.00070 1.23251
0.99298 0.96179 0.85443 1.88068 1.67760 1.25525 1.48581 0.94601
0.90807 0.93370 0.79299 0.94197 0.89132 0.88054 0.80484 0.80789
0.83475 0.86990 0.85206 0.85101 0.93989
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -5.05 9.06 71.98 0.65 -4.39 16
2 C 0.18 6.75 2.77 44.99 0.12 6.87 16
3 H 0.06 2.23 8.08 -2.39 -0.02 2.21 16
4 N -0.73 -37.10 5.10 -322.94 -1.65 -38.75 16
5 C -0.24 -13.13 9.93 84.03 0.83 -12.30 16
6 H 0.08 4.07 7.83 -2.91 -0.02 4.05 16
7 C -0.08 -4.52 5.50 84.86 0.47 -4.05 16
8 N -0.97 -59.91 13.06 21.65 0.28 -59.63 16
9 Si 0.97 46.40 29.55 68.60 2.03 48.43 16
10 H -0.29 -13.52 7.11 99.48 0.71 -12.81 16
11 H -0.30 -14.37 7.11 99.48 0.71 -13.67 16
12 H -0.27 -12.15 7.11 99.48 0.71 -11.44 16
13 C 0.09 2.90 2.59 30.55 0.08 2.98 16
14 H 0.04 1.36 8.14 -2.39 -0.02 1.34 16
15 C 0.09 2.33 5.82 86.21 0.50 2.83 16
16 N -0.60 -12.43 3.03 -821.71 -2.49 -14.92 16
17 C 0.56 12.63 7.41 86.75 0.64 13.28 16
18 O -0.57 -17.39 16.23 -3.96 -0.06 -17.45 16
19 C -0.10 -1.65 5.36 -20.06 -0.11 -1.76 16
20 C -0.09 -0.89 7.29 22.28 0.16 -0.73 16
21 C -0.05 -0.49 10.03 22.19 0.22 -0.27 16
22 C 0.01 0.21 7.36 39.76 0.29 0.50 16
23 N -0.28 -5.63 12.42 -52.38 -0.65 -6.28 16
24 N -0.02 -0.35 13.28 37.02 0.49 0.15 16
25 N -0.39 -4.89 7.08 -51.70 -0.37 -5.25 16
26 H 0.47 2.12 8.96 -219.81 -1.97 0.15 16
27 C 0.01 0.22 7.40 39.02 0.29 0.51 16
28 C -0.04 -0.61 9.62 22.58 0.22 -0.39 16
29 C 0.06 0.82 4.90 86.35 0.42 1.24 16
30 C 0.04 0.72 6.98 72.08 0.50 1.22 16
31 O -0.38 -11.69 9.24 -148.98 -1.38 -13.07 16
32 H 0.03 1.32 8.14 -2.39 -0.02 1.30 16
33 H 0.07 1.92 6.42 -2.38 -0.02 1.90 16
34 H 0.05 1.73 7.56 -2.39 -0.02 1.71 16
35 H 0.38 20.80 7.58 -92.71 -0.70 20.09 16
36 H 0.25 14.95 8.31 -92.71 -0.77 14.18 16
37 H 0.09 2.52 7.06 -2.39 -0.02 2.51 16
38 H 0.10 2.22 6.25 -2.39 -0.01 2.21 16
39 H 0.18 0.86 5.73 -2.91 -0.02 0.85 16
40 H 0.17 0.91 8.06 -2.91 -0.02 0.89 16
41 H 0.15 2.16 7.96 -2.91 -0.02 2.14 16
42 H 0.11 1.03 7.94 -2.39 -0.02 1.01 16
43 H 0.13 1.13 4.56 -2.39 -0.01 1.12 16
44 H 0.13 1.99 8.14 -2.39 -0.02 1.97 16
45 H 0.04 0.95 8.14 -2.39 -0.02 0.93 16
Total: -1.00 -78.52 367.21 -0.09 -78.61
By element:
Atomic # 1 Polarization: 24.23 SS G_CDS: -1.60 Total: 22.62 kcal
Atomic # 6 Polarization: 0.23 SS G_CDS: 5.30 Total: 5.53 kcal
Atomic # 7 Polarization: -120.30 SS G_CDS: -4.38 Total: -124.67 kcal
Atomic # 8 Polarization: -29.08 SS G_CDS: -1.44 Total: -30.52 kcal
Atomic # 14 Polarization: 46.40 SS G_CDS: 2.03 Total: 48.43 kcal
Total: -78.52 -0.09 -78.61 kcal
The number of atoms in the molecule is 45
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001506854838.mol2 45
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 121.852 kcal
(2) G-P(sol) polarization free energy of solvation -78.520 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.332 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.087 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.607 kcal
(6) G-S(sol) free energy of system = (1) + (5) 43.245 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 2.67 seconds