Wall clock time and date at job start Wed Apr 1 2020 03:59:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08998 * 109.47142 * 2 1 4 4 N 1.46502 * 109.46908 * 119.99468 * 2 1 3 5 5 C 1.36938 * 120.00185 * 275.00069 * 4 2 1 6 6 H 1.08006 * 119.99998 * 359.97438 * 5 4 2 7 7 C 1.38812 * 120.00418 * 179.97438 * 5 4 2 8 8 N 1.31622 * 119.99769 * 0.02562 * 7 5 4 9 9 Si 1.86795 * 120.00238 * 180.02562 * 7 5 4 10 10 H 1.48498 * 109.47083 * 90.00016 * 9 7 5 11 11 H 1.48505 * 109.47020 * 210.00028 * 9 7 5 12 12 H 1.48496 * 109.47314 * 329.99928 * 9 7 5 13 13 C 1.52994 * 109.47423 * 239.99431 * 2 1 3 14 14 H 1.08996 * 109.51275 * 184.90192 * 13 2 1 15 15 C 1.52876 * 109.62550 * 64.90736 * 13 2 1 16 16 N 1.47153 * 108.61371 * 187.89840 * 15 13 2 17 17 C 1.34770 * 120.98398 * 230.50541 * 16 15 13 18 18 O 1.21578 * 119.99952 * 4.88772 * 17 16 15 19 19 C 1.47713 * 120.00186 * 184.88519 * 17 16 15 20 20 C 1.40257 * 119.87828 * 33.40767 * 19 17 16 21 21 C 1.36163 * 120.56035 * 180.02562 * 20 19 17 22 22 C 1.39910 * 119.97335 * 359.95998 * 21 20 19 23 23 N 1.34749 * 134.58986 * 180.02562 * 22 21 20 24 24 N 1.28646 * 109.29375 * 179.70838 * 23 22 21 25 25 N 1.28820 * 111.78804 * 0.45010 * 24 23 22 26 26 H 0.96998 * 125.94215 * 179.81635 * 25 24 23 27 27 C 1.37366 * 108.11615 * 359.55234 * 25 24 23 28 28 C 1.38611 * 134.89105 * 180.28423 * 27 25 24 29 29 C 1.47154 * 118.02920 * 50.22315 * 16 15 13 30 30 C 1.53288 * 108.39035 * 309.71871 * 29 16 15 31 31 O 1.42963 * 109.51304 * 305.00335 * 13 2 1 32 32 H 1.08995 * 109.46989 * 300.00703 * 1 2 3 33 33 H 1.09004 * 109.46750 * 60.00550 * 1 2 3 34 34 H 1.08998 * 109.47142 * 179.97438 * 1 2 3 35 35 H 0.96992 * 120.00192 * 94.99872 * 4 2 1 36 36 H 0.96996 * 120.00035 * 180.02562 * 8 7 5 37 37 H 1.09003 * 109.61682 * 68.07723 * 15 13 2 38 38 H 1.09001 * 109.52399 * 307.66848 * 15 13 2 39 39 H 1.08000 * 119.72394 * 0.02562 * 20 19 17 40 40 H 1.08001 * 120.01629 * 179.97438 * 21 20 19 41 41 H 1.08001 * 120.24749 * 359.94754 * 28 27 25 42 42 H 1.09000 * 109.67879 * 69.44900 * 29 16 15 43 43 H 1.09002 * 109.67890 * 189.99419 * 29 16 15 44 44 H 1.08998 * 109.51567 * 172.22465 * 30 29 16 45 45 H 1.08997 * 109.51675 * 292.38161 * 30 29 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0183 -0.6905 1.1963 5 6 2.1491 -0.0073 2.3758 6 1 1.8926 1.0407 2.4241 7 6 2.6112 -0.6617 3.5094 8 7 2.9242 -1.9388 3.4505 9 14 2.7889 0.2702 5.1186 10 1 1.5208 0.1790 5.8860 11 1 3.8931 -0.3231 5.9148 12 1 3.0940 1.6953 4.8343 13 6 2.0401 -0.7213 -1.2491 14 1 3.1265 -0.7983 -1.2069 15 6 1.6355 0.0641 -2.4968 16 7 1.9669 -0.7384 -3.6849 17 6 2.6711 -0.2096 -4.7050 18 8 3.1188 0.9172 -4.6148 19 6 2.8992 -0.9989 -5.9325 20 6 1.9201 -1.9000 -6.3757 21 6 2.1161 -2.6350 -7.5051 22 6 3.3018 -2.4936 -8.2341 23 7 3.7938 -3.0515 -9.3577 24 7 4.9544 -2.5551 -9.6058 25 7 5.3048 -1.6911 -8.7170 26 1 6.1384 -1.1953 -8.7025 27 6 4.2903 -1.5897 -7.7965 28 6 4.0841 -0.8446 -6.6460 29 6 1.5119 -2.1373 -3.7233 30 6 1.9271 -2.8171 -2.4137 31 8 1.4705 -2.0312 -1.3101 32 1 -0.3633 0.5139 0.8899 33 1 -0.3633 0.5138 -0.8901 34 1 -0.3633 -1.0276 -0.0005 35 1 2.2490 -1.6316 1.1528 36 1 3.2468 -2.3961 4.2427 37 1 2.1801 1.0078 -2.5277 38 1 0.5634 0.2590 -2.4727 39 1 1.0030 -2.0120 -5.8166 40 1 1.3564 -3.3266 -7.8382 41 1 4.8379 -0.1505 -6.3049 42 1 0.4271 -2.1678 -3.8250 43 1 1.9746 -2.6508 -4.5662 44 1 1.4817 -3.8106 -2.3620 45 1 3.0131 -2.9017 -2.3757 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001506854838.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:59:19 Heat of formation + Delta-G solvation = 43.244958 kcal Electronic energy + Delta-G solvation = -29974.257284 eV Core-core repulsion = 25801.056881 eV Total energy + Delta-G solvation = -4173.200403 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 2.67 seconds Orbital eigenvalues (eV) -44.34746 -41.76967 -39.90560 -38.51197 -37.12479 -35.83534 -34.99510 -34.33631 -32.40714 -31.68276 -31.44270 -29.96519 -28.62471 -26.63464 -25.75103 -25.01597 -24.47516 -23.71600 -23.31404 -21.32755 -20.79527 -19.63184 -19.48068 -19.22163 -17.83191 -17.55142 -17.36141 -17.08509 -16.82488 -16.54763 -16.19307 -16.11794 -15.61060 -15.42085 -15.24066 -15.09379 -14.68511 -14.37691 -14.23554 -13.90045 -13.67028 -13.45962 -13.34603 -13.13887 -13.00561 -12.81825 -12.65805 -12.40857 -12.37902 -12.35350 -12.16271 -11.98495 -11.79536 -11.61926 -11.56432 -11.22351 -10.97119 -10.91097 -10.12594 -9.67404 -9.51880 -8.98525 -7.90906 -5.19099 -0.81366 0.03143 0.94380 1.34755 1.48375 1.49920 1.58015 1.64152 1.77769 2.47738 2.57893 2.81851 2.85878 3.23480 3.43090 3.45601 3.61284 3.76114 3.85057 3.92033 3.96374 3.98654 4.03911 4.15822 4.24941 4.35136 4.42086 4.50332 4.63723 4.66594 4.72587 4.77928 4.84497 4.86617 4.99660 5.03284 5.08407 5.13596 5.22620 5.30598 5.44780 5.53673 5.67021 5.78589 6.18362 6.28091 6.31825 6.89519 7.07793 7.37281 8.13777 8.37790 9.32621 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.023605 B = 0.002154 C = 0.002137 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1185.902449 B =12995.035075 C =13102.115174 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.175 3.825 3 H 0.058 0.942 4 N -0.733 5.733 5 C -0.237 4.237 6 H 0.077 0.923 7 C -0.078 4.078 8 N -0.969 5.969 9 Si 0.971 3.029 10 H -0.288 1.288 11 H -0.298 1.298 12 H -0.269 1.269 13 C 0.090 3.910 14 H 0.037 0.963 15 C 0.092 3.908 16 N -0.602 5.602 17 C 0.562 3.438 18 O -0.572 6.572 19 C -0.102 4.102 20 C -0.088 4.088 21 C -0.046 4.046 22 C 0.012 3.988 23 N -0.279 5.279 24 N -0.019 5.019 25 N -0.393 5.393 26 H 0.470 0.530 27 C 0.014 3.986 28 C -0.039 4.039 29 C 0.060 3.940 30 C 0.035 3.965 31 O -0.381 6.381 32 H 0.035 0.965 33 H 0.073 0.927 34 H 0.047 0.953 35 H 0.375 0.625 36 H 0.249 0.751 37 H 0.090 0.910 38 H 0.102 0.898 39 H 0.178 0.822 40 H 0.175 0.825 41 H 0.148 0.852 42 H 0.112 0.888 43 H 0.130 0.870 44 H 0.131 0.869 45 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.870 -1.435 -26.602 26.706 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.066 3.934 3 H 0.076 0.924 4 N -0.373 5.373 5 C -0.368 4.368 6 H 0.095 0.905 7 C -0.270 4.270 8 N -0.620 5.620 9 Si 0.800 3.200 10 H -0.215 1.215 11 H -0.224 1.224 12 H -0.194 1.194 13 C 0.031 3.969 14 H 0.055 0.945 15 C -0.031 4.031 16 N -0.334 5.334 17 C 0.351 3.649 18 O -0.452 6.452 19 C -0.109 4.109 20 C -0.109 4.109 21 C -0.068 4.068 22 C -0.114 4.114 23 N -0.154 5.154 24 N -0.001 5.001 25 N -0.125 5.125 26 H 0.321 0.679 27 C -0.106 4.106 28 C -0.062 4.062 29 C -0.061 4.061 30 C -0.042 4.042 31 O -0.299 6.299 32 H 0.054 0.946 33 H 0.092 0.908 34 H 0.066 0.934 35 H 0.207 0.793 36 H 0.058 0.942 37 H 0.109 0.891 38 H 0.119 0.881 39 H 0.195 0.805 40 H 0.192 0.808 41 H 0.165 0.835 42 H 0.130 0.870 43 H 0.148 0.852 44 H 0.149 0.851 45 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -1.412 -1.536 -27.613 27.692 hybrid contribution 1.140 0.990 2.010 2.514 sum -0.272 -0.545 -25.603 25.611 Atomic orbital electron populations 1.22217 0.96714 1.01291 1.00588 1.20443 0.94013 0.94472 0.84440 0.92406 1.42533 1.78306 1.10471 1.05991 1.19646 1.34690 0.94201 0.88312 0.90507 1.25542 1.03174 0.96905 1.01407 1.69836 1.52742 1.10231 1.29230 0.85171 0.76809 0.78051 0.79937 1.21497 1.22448 1.19430 1.22463 0.95951 0.83962 0.94552 0.94511 1.22223 1.02838 0.95043 0.82957 1.48079 1.53948 1.13769 1.17604 1.18465 0.77215 0.85870 0.83304 1.90800 1.51391 1.21012 1.81966 1.19585 0.96311 0.99535 0.95502 1.21400 0.99835 0.93520 0.96133 1.20280 0.94172 0.99873 0.92476 1.20545 0.97917 0.97646 0.95263 1.75373 1.02804 1.22382 1.14851 1.77947 1.09245 1.00925 1.12014 1.44942 1.18209 1.32110 1.17195 0.67905 1.19626 0.91353 1.03307 0.96337 1.20056 0.97864 0.97422 0.90819 1.23305 1.02834 0.79933 1.00070 1.23251 0.99298 0.96179 0.85443 1.88068 1.67760 1.25525 1.48581 0.94601 0.90807 0.93370 0.79299 0.94197 0.89132 0.88054 0.80484 0.80789 0.83475 0.86990 0.85206 0.85101 0.93989 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.05 9.06 71.98 0.65 -4.39 16 2 C 0.18 6.75 2.77 44.99 0.12 6.87 16 3 H 0.06 2.23 8.08 -2.39 -0.02 2.21 16 4 N -0.73 -37.10 5.10 -322.94 -1.65 -38.75 16 5 C -0.24 -13.13 9.93 84.03 0.83 -12.30 16 6 H 0.08 4.07 7.83 -2.91 -0.02 4.05 16 7 C -0.08 -4.52 5.50 84.86 0.47 -4.05 16 8 N -0.97 -59.91 13.06 21.65 0.28 -59.63 16 9 Si 0.97 46.40 29.55 68.60 2.03 48.43 16 10 H -0.29 -13.52 7.11 99.48 0.71 -12.81 16 11 H -0.30 -14.37 7.11 99.48 0.71 -13.67 16 12 H -0.27 -12.15 7.11 99.48 0.71 -11.44 16 13 C 0.09 2.90 2.59 30.55 0.08 2.98 16 14 H 0.04 1.36 8.14 -2.39 -0.02 1.34 16 15 C 0.09 2.33 5.82 86.21 0.50 2.83 16 16 N -0.60 -12.43 3.03 -821.71 -2.49 -14.92 16 17 C 0.56 12.63 7.41 86.75 0.64 13.28 16 18 O -0.57 -17.39 16.23 -3.96 -0.06 -17.45 16 19 C -0.10 -1.65 5.36 -20.06 -0.11 -1.76 16 20 C -0.09 -0.89 7.29 22.28 0.16 -0.73 16 21 C -0.05 -0.49 10.03 22.19 0.22 -0.27 16 22 C 0.01 0.21 7.36 39.76 0.29 0.50 16 23 N -0.28 -5.63 12.42 -52.38 -0.65 -6.28 16 24 N -0.02 -0.35 13.28 37.02 0.49 0.15 16 25 N -0.39 -4.89 7.08 -51.70 -0.37 -5.25 16 26 H 0.47 2.12 8.96 -219.81 -1.97 0.15 16 27 C 0.01 0.22 7.40 39.02 0.29 0.51 16 28 C -0.04 -0.61 9.62 22.58 0.22 -0.39 16 29 C 0.06 0.82 4.90 86.35 0.42 1.24 16 30 C 0.04 0.72 6.98 72.08 0.50 1.22 16 31 O -0.38 -11.69 9.24 -148.98 -1.38 -13.07 16 32 H 0.03 1.32 8.14 -2.39 -0.02 1.30 16 33 H 0.07 1.92 6.42 -2.38 -0.02 1.90 16 34 H 0.05 1.73 7.56 -2.39 -0.02 1.71 16 35 H 0.38 20.80 7.58 -92.71 -0.70 20.09 16 36 H 0.25 14.95 8.31 -92.71 -0.77 14.18 16 37 H 0.09 2.52 7.06 -2.39 -0.02 2.51 16 38 H 0.10 2.22 6.25 -2.39 -0.01 2.21 16 39 H 0.18 0.86 5.73 -2.91 -0.02 0.85 16 40 H 0.17 0.91 8.06 -2.91 -0.02 0.89 16 41 H 0.15 2.16 7.96 -2.91 -0.02 2.14 16 42 H 0.11 1.03 7.94 -2.39 -0.02 1.01 16 43 H 0.13 1.13 4.56 -2.39 -0.01 1.12 16 44 H 0.13 1.99 8.14 -2.39 -0.02 1.97 16 45 H 0.04 0.95 8.14 -2.39 -0.02 0.93 16 Total: -1.00 -78.52 367.21 -0.09 -78.61 By element: Atomic # 1 Polarization: 24.23 SS G_CDS: -1.60 Total: 22.62 kcal Atomic # 6 Polarization: 0.23 SS G_CDS: 5.30 Total: 5.53 kcal Atomic # 7 Polarization: -120.30 SS G_CDS: -4.38 Total: -124.67 kcal Atomic # 8 Polarization: -29.08 SS G_CDS: -1.44 Total: -30.52 kcal Atomic # 14 Polarization: 46.40 SS G_CDS: 2.03 Total: 48.43 kcal Total: -78.52 -0.09 -78.61 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001506854838.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.852 kcal (2) G-P(sol) polarization free energy of solvation -78.520 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.332 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.087 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.607 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.245 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.67 seconds