Wall clock time and date at job start Wed Apr 1 2020 05:16:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08999 * 109.47567 * 2 1 4 4 C 1.53007 * 109.46792 * 240.00290 * 2 1 3 5 5 N 1.46502 * 109.47090 * 185.00066 * 4 2 1 6 6 C 1.34776 * 120.00223 * 179.97438 * 5 4 2 7 7 O 1.21615 * 119.99668 * 0.02562 * 6 5 4 8 8 C 1.47382 * 120.00219 * 179.97438 * 6 5 4 9 9 C 1.39254 * 120.83198 * 0.02562 * 8 6 5 10 10 N 1.31914 * 120.96787 * 180.02562 * 9 8 6 11 11 C 1.31918 * 122.71450 * 0.02562 * 10 9 8 12 12 C 1.38682 * 120.80044 * 359.97438 * 11 10 9 13 13 N 1.37752 * 134.30579 * 180.02562 * 12 11 10 14 14 H 0.96991 * 125.56127 * 359.97438 * 13 12 11 15 15 C 1.36560 * 108.88057 * 180.02562 * 13 12 11 16 16 C 1.34649 * 109.65797 * 359.97438 * 15 13 12 17 17 C 1.40993 * 118.84234 * 359.97438 * 12 11 10 18 18 N 1.46901 * 109.47380 * 120.00309 * 2 1 3 19 19 C 1.46896 * 111.00060 * 274.99905 * 18 2 1 20 20 C 1.50701 * 109.47225 * 179.97438 * 19 18 2 21 21 O 1.21289 * 120.00143 * 359.97438 * 20 19 18 22 22 N 1.34772 * 119.99868 * 179.97438 * 20 19 18 23 23 C 1.37096 * 119.99961 * 179.97438 * 22 20 19 24 24 H 1.08002 * 120.00413 * 0.02562 * 23 22 20 25 25 C 1.38950 * 120.00177 * 180.02562 * 23 22 20 26 26 N 1.31410 * 119.99998 * 0.02562 * 25 23 22 27 27 Si 1.86797 * 120.00141 * 180.02562 * 25 23 22 28 28 H 1.48504 * 109.47059 * 60.00122 * 27 25 23 29 29 H 1.48501 * 109.47243 * 179.97438 * 27 25 23 30 30 H 1.48497 * 109.47000 * 300.00012 * 27 25 23 31 31 H 1.09003 * 109.46982 * 299.99615 * 1 2 3 32 32 H 1.08996 * 109.47135 * 59.99465 * 1 2 3 33 33 H 1.08999 * 109.47567 * 180.02562 * 1 2 3 34 34 H 1.08997 * 109.47396 * 65.00213 * 4 2 1 35 35 H 1.09006 * 109.46991 * 304.99862 * 4 2 1 36 36 H 0.97001 * 119.99890 * 0.02562 * 5 4 2 37 37 H 1.08000 * 119.51744 * 359.97438 * 9 8 6 38 38 H 1.08001 * 119.60042 * 179.97438 * 11 10 9 39 39 H 1.08000 * 125.17532 * 179.97438 * 15 13 12 40 40 H 1.08001 * 126.08697 * 179.97438 * 16 15 13 41 41 H 1.00902 * 110.99454 * 38.95206 * 18 2 1 42 42 H 1.08999 * 109.47033 * 299.99823 * 19 18 2 43 43 H 1.09002 * 109.46949 * 59.99524 * 19 18 2 44 44 H 0.96998 * 120.00362 * 0.02562 * 22 20 19 45 45 H 0.96997 * 120.00419 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0399 -0.7212 -1.2494 5 7 3.5000 -0.8264 -1.1907 6 6 4.1729 -1.4292 -2.1909 7 8 3.5681 -1.8853 -3.1423 8 6 5.6418 -1.5345 -2.1322 9 6 6.3517 -1.0178 -1.0514 10 7 7.6665 -1.1101 -0.9964 11 6 8.3810 -1.6865 -1.9437 12 6 7.7690 -2.2325 -3.0620 13 7 8.2252 -2.8818 -4.1880 14 1 9.1538 -3.0763 -4.3896 15 6 7.1570 -3.2060 -4.9745 16 6 6.0196 -2.7853 -4.3896 17 6 6.3650 -2.1624 -3.1713 18 7 2.0197 -0.6926 1.1994 19 6 2.0825 0.2224 2.3469 20 6 2.5875 -0.5220 3.5559 21 8 2.8670 -1.6991 3.4703 22 7 2.7284 0.1202 4.7324 23 6 3.1872 -0.5571 5.8325 24 1 3.4362 -1.6053 5.7563 25 6 3.3321 0.1048 7.0455 26 7 3.0287 1.3801 7.1385 27 14 3.9579 -0.8179 8.5442 28 1 5.3140 -1.3547 8.2644 29 1 4.0221 0.1072 9.7041 30 1 3.0360 -1.9396 8.8555 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5139 -0.8899 33 1 -0.3634 -1.0276 0.0005 34 1 1.7516 -0.1583 -2.1370 35 1 1.6052 -1.7198 -1.2953 36 1 3.9823 -0.4629 -0.4317 37 1 5.8182 -0.5336 -0.2468 38 1 9.4557 -1.7338 -1.8472 39 1 7.2156 -3.7214 -5.9218 40 1 5.0206 -2.9036 -4.7827 41 1 1.4495 -1.4980 1.4099 42 1 2.7589 1.0460 2.1182 43 1 1.0871 0.6162 2.5525 44 1 2.5045 1.0615 4.8010 45 1 3.1302 1.8423 7.9851 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001567032664.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:16:37 Heat of formation + Delta-G solvation = 2.010078 kcal Electronic energy + Delta-G solvation = -28994.855266 eV Core-core repulsion = 24819.866784 eV Total energy + Delta-G solvation = -4174.988481 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 2.53 seconds Orbital eigenvalues (eV) -41.99529 -39.60973 -38.44147 -38.04298 -36.86610 -34.13896 -33.73568 -32.77161 -31.31085 -30.83618 -30.17123 -29.79701 -26.61361 -26.19628 -24.37543 -23.84399 -22.78222 -21.39034 -20.96021 -20.61505 -19.30974 -18.63107 -17.90131 -17.40480 -16.86456 -16.37631 -15.91108 -15.50449 -15.27685 -15.19147 -14.98710 -14.89908 -14.55084 -14.35623 -13.96474 -13.83374 -13.45272 -13.24543 -13.08438 -12.93307 -12.64321 -12.54656 -12.45749 -12.19214 -12.17119 -11.68654 -11.56616 -11.40104 -11.02058 -10.96984 -10.43500 -10.36135 -10.32112 -10.20676 -9.49474 -9.48435 -8.96532 -8.88568 -8.49671 -8.16858 -8.10792 -7.95771 -6.41225 -3.81962 0.31918 1.23538 2.44817 2.68588 2.93032 3.21054 3.22317 3.26754 3.31316 3.86744 3.90664 4.06432 4.22690 4.31290 4.47313 4.52920 4.66919 4.79177 4.88971 4.98268 5.04110 5.13315 5.15694 5.22014 5.27872 5.49078 5.50453 5.58355 5.67297 5.71063 5.77456 5.89795 5.98006 6.01157 6.05594 6.21038 6.26356 6.37702 6.51079 6.63254 7.06573 7.14541 7.55743 7.59294 7.63851 7.80751 8.06452 8.30217 8.61436 9.18450 9.54555 10.05908 10.76377 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.011403 B = 0.002405 C = 0.002056 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2454.850342 B =11639.591133 C =13615.224566 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.067 3.933 3 H 0.085 0.915 4 C 0.135 3.865 5 N -0.706 5.706 6 C 0.564 3.436 7 O -0.544 6.544 8 C -0.143 4.143 9 C 0.107 3.893 10 N -0.470 5.470 11 C 0.138 3.862 12 C 0.016 3.984 13 N -0.578 5.578 14 H 0.421 0.579 15 C 0.064 3.936 16 C -0.191 4.191 17 C -0.021 4.021 18 N -0.664 5.664 19 C 0.049 3.951 20 C 0.439 3.561 21 O -0.582 6.582 22 N -0.563 5.563 23 C -0.299 4.299 24 H 0.102 0.898 25 C 0.023 3.977 26 N -0.902 5.902 27 Si 0.930 3.070 28 H -0.273 1.273 29 H -0.285 1.285 30 H -0.274 1.274 31 H 0.062 0.938 32 H 0.063 0.937 33 H 0.061 0.939 34 H 0.069 0.931 35 H 0.068 0.932 36 H 0.409 0.591 37 H 0.163 0.837 38 H 0.157 0.843 39 H 0.178 0.822 40 H 0.159 0.841 41 H 0.354 0.646 42 H 0.086 0.914 43 H 0.045 0.955 44 H 0.392 0.608 45 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.588 -1.952 -23.588 24.319 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C -0.044 4.044 3 H 0.103 0.897 4 C 0.011 3.989 5 N -0.358 5.358 6 C 0.350 3.650 7 O -0.423 6.423 8 C -0.149 4.149 9 C -0.045 4.045 10 N -0.178 5.178 11 C -0.028 4.028 12 C -0.094 4.094 13 N -0.181 5.181 14 H 0.259 0.741 15 C -0.066 4.066 16 C -0.216 4.216 17 C -0.033 4.033 18 N -0.297 5.297 19 C -0.083 4.083 20 C 0.225 3.775 21 O -0.466 6.466 22 N -0.200 5.200 23 C -0.429 4.429 24 H 0.120 0.880 25 C -0.179 4.179 26 N -0.543 5.543 27 Si 0.757 3.243 28 H -0.198 1.198 29 H -0.210 1.210 30 H -0.199 1.199 31 H 0.081 0.919 32 H 0.082 0.918 33 H 0.080 0.920 34 H 0.088 0.912 35 H 0.086 0.914 36 H 0.246 0.754 37 H 0.180 0.820 38 H 0.174 0.826 39 H 0.195 0.805 40 H 0.176 0.824 41 H 0.174 0.826 42 H 0.104 0.896 43 H 0.063 0.937 44 H 0.225 0.775 45 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 6.480 -2.508 -23.558 24.561 hybrid contribution -0.588 0.033 0.712 0.924 sum 5.891 -2.475 -22.846 23.722 Atomic orbital electron populations 1.22428 0.96205 1.02737 1.02612 1.21869 0.93420 0.98363 0.90745 0.89707 1.21341 0.79821 1.01032 0.96701 1.45720 1.07871 1.59000 1.23193 1.17861 0.86370 0.78144 0.82575 1.90726 1.69728 1.48249 1.33562 1.20404 0.94022 1.04080 0.96413 1.22772 0.89684 0.96162 0.95927 1.67630 1.08135 1.15721 1.26312 1.21967 1.00017 0.93765 0.87082 1.19362 0.94384 1.03426 0.92215 1.41750 1.09309 1.49858 1.17181 0.74107 1.22200 0.85884 1.01300 0.97198 1.20879 0.99271 1.05879 0.95574 1.18165 0.91407 0.98481 0.95251 1.60181 1.57734 1.09215 1.02559 1.21725 1.00075 0.95638 0.90899 1.19800 0.85285 0.88262 0.84195 1.90538 1.55274 1.16215 1.84591 1.41854 1.57741 1.12426 1.07942 1.19645 1.40084 0.96398 0.86747 0.87992 1.25253 0.97626 0.95771 0.99246 1.69598 1.48616 1.08835 1.27281 0.85927 0.79498 0.78816 0.80043 1.19847 1.20996 1.19944 0.91925 0.91842 0.91965 0.91243 0.91392 0.75424 0.82029 0.82617 0.80533 0.82364 0.82603 0.89583 0.93696 0.77486 0.91827 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.72 9.16 37.16 0.34 -1.38 16 2 C 0.07 0.73 2.75 -67.71 -0.19 0.55 16 3 H 0.08 0.86 7.80 -51.93 -0.40 0.46 16 4 C 0.14 1.57 5.37 -4.04 -0.02 1.55 16 5 N -0.71 -9.06 5.34 -61.39 -0.33 -9.38 16 6 C 0.56 8.23 7.77 -12.54 -0.10 8.13 16 7 O -0.54 -9.09 15.22 5.26 0.08 -9.01 16 8 C -0.14 -1.98 5.91 -104.63 -0.62 -2.60 16 9 C 0.11 1.42 10.71 -17.14 -0.18 1.23 16 10 N -0.47 -6.22 10.30 -12.85 -0.13 -6.36 16 11 C 0.14 1.46 11.21 -17.35 -0.19 1.26 16 12 C 0.02 0.17 7.31 -84.00 -0.61 -0.45 16 13 N -0.58 -3.96 6.13 -10.63 -0.07 -4.03 16 14 H 0.42 1.31 8.96 -40.82 -0.37 0.95 16 15 C 0.06 0.46 11.84 -16.72 -0.20 0.27 16 16 C -0.19 -2.13 10.09 -39.76 -0.40 -2.53 16 17 C -0.02 -0.27 6.04 -106.59 -0.64 -0.92 16 18 N -0.66 -9.63 5.32 -107.99 -0.57 -10.21 16 19 C 0.05 0.80 5.97 -4.98 -0.03 0.77 16 20 C 0.44 9.98 7.82 -10.99 -0.09 9.90 16 21 O -0.58 -15.41 15.78 5.55 0.09 -15.33 16 22 N -0.56 -13.96 5.29 -10.96 -0.06 -14.02 16 23 C -0.30 -8.27 9.68 -14.93 -0.14 -8.42 16 24 H 0.10 2.97 7.16 -52.49 -0.38 2.59 16 25 C 0.02 0.60 5.50 -17.47 -0.10 0.51 16 26 N -0.90 -24.36 13.05 55.50 0.72 -23.64 16 27 Si 0.93 21.05 29.55 -169.99 -5.02 16.03 16 28 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 29 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 30 H -0.27 -6.17 7.11 56.52 0.40 -5.76 16 31 H 0.06 0.62 7.45 -51.93 -0.39 0.23 16 32 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 33 H 0.06 0.60 8.13 -51.93 -0.42 0.18 16 34 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 35 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 36 H 0.41 5.08 6.21 -40.82 -0.25 4.82 16 37 H 0.16 1.96 6.42 -52.49 -0.34 1.63 16 38 H 0.16 1.09 8.06 -52.49 -0.42 0.67 16 39 H 0.18 0.55 8.06 -52.49 -0.42 0.13 16 40 H 0.16 1.86 7.19 -52.49 -0.38 1.49 16 41 H 0.35 5.56 8.17 -39.29 -0.32 5.24 16 42 H 0.09 1.26 8.06 -51.93 -0.42 0.84 16 43 H 0.05 0.66 7.44 -51.93 -0.39 0.27 16 44 H 0.39 9.28 7.90 -40.82 -0.32 8.96 16 45 H 0.27 6.98 8.31 -40.82 -0.34 6.64 16 LS Contribution 384.16 15.07 5.79 5.79 Total: -1.00 -35.44 384.16 -8.29 -43.73 By element: Atomic # 1 Polarization: 24.15 SS G_CDS: -5.62 Total: 18.53 kcal Atomic # 6 Polarization: 11.06 SS G_CDS: -3.17 Total: 7.88 kcal Atomic # 7 Polarization: -67.20 SS G_CDS: -0.43 Total: -67.63 kcal Atomic # 8 Polarization: -24.50 SS G_CDS: 0.17 Total: -24.34 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -5.02 Total: 16.03 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -35.44 -8.29 -43.73 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001567032664.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.743 kcal (2) G-P(sol) polarization free energy of solvation -35.438 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.304 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.294 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.733 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.010 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.53 seconds