Wall clock time and date at job start Wed Apr 1 2020 05:16:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08999 * 109.47567 * 2 1 4 4 C 1.53007 * 109.46792 * 240.00290 * 2 1 3 5 5 N 1.46502 * 109.47090 * 185.00066 * 4 2 1 6 6 C 1.34776 * 120.00223 * 179.97438 * 5 4 2 7 7 O 1.21615 * 119.99668 * 0.02562 * 6 5 4 8 8 C 1.47382 * 120.00219 * 179.97438 * 6 5 4 9 9 C 1.39254 * 120.83198 * 0.02562 * 8 6 5 10 10 N 1.31914 * 120.96787 * 180.02562 * 9 8 6 11 11 C 1.31918 * 122.71450 * 0.02562 * 10 9 8 12 12 C 1.38682 * 120.80044 * 359.97438 * 11 10 9 13 13 N 1.37752 * 134.30579 * 180.02562 * 12 11 10 14 14 H 0.96991 * 125.56127 * 359.97438 * 13 12 11 15 15 C 1.36560 * 108.88057 * 180.02562 * 13 12 11 16 16 C 1.34649 * 109.65797 * 359.97438 * 15 13 12 17 17 C 1.40993 * 118.84234 * 359.97438 * 12 11 10 18 18 N 1.46901 * 109.47380 * 120.00309 * 2 1 3 19 19 C 1.46896 * 111.00060 * 274.99905 * 18 2 1 20 20 C 1.50701 * 109.47225 * 179.97438 * 19 18 2 21 21 O 1.21289 * 120.00143 * 359.97438 * 20 19 18 22 22 N 1.34772 * 119.99868 * 179.97438 * 20 19 18 23 23 C 1.37096 * 119.99961 * 179.97438 * 22 20 19 24 24 H 1.08002 * 120.00413 * 0.02562 * 23 22 20 25 25 C 1.38950 * 120.00177 * 180.02562 * 23 22 20 26 26 N 1.31410 * 119.99998 * 0.02562 * 25 23 22 27 27 Si 1.86797 * 120.00141 * 180.02562 * 25 23 22 28 28 H 1.48504 * 109.47059 * 60.00122 * 27 25 23 29 29 H 1.48501 * 109.47243 * 179.97438 * 27 25 23 30 30 H 1.48497 * 109.47000 * 300.00012 * 27 25 23 31 31 H 1.09003 * 109.46982 * 299.99615 * 1 2 3 32 32 H 1.08996 * 109.47135 * 59.99465 * 1 2 3 33 33 H 1.08999 * 109.47567 * 180.02562 * 1 2 3 34 34 H 1.08997 * 109.47396 * 65.00213 * 4 2 1 35 35 H 1.09006 * 109.46991 * 304.99862 * 4 2 1 36 36 H 0.97001 * 119.99890 * 0.02562 * 5 4 2 37 37 H 1.08000 * 119.51744 * 359.97438 * 9 8 6 38 38 H 1.08001 * 119.60042 * 179.97438 * 11 10 9 39 39 H 1.08000 * 125.17532 * 179.97438 * 15 13 12 40 40 H 1.08001 * 126.08697 * 179.97438 * 16 15 13 41 41 H 1.00902 * 110.99454 * 38.95206 * 18 2 1 42 42 H 1.08999 * 109.47033 * 299.99823 * 19 18 2 43 43 H 1.09002 * 109.46949 * 59.99524 * 19 18 2 44 44 H 0.96998 * 120.00362 * 0.02562 * 22 20 19 45 45 H 0.96997 * 120.00419 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0399 -0.7212 -1.2494 5 7 3.5000 -0.8264 -1.1907 6 6 4.1729 -1.4292 -2.1909 7 8 3.5681 -1.8853 -3.1423 8 6 5.6418 -1.5345 -2.1322 9 6 6.3517 -1.0178 -1.0514 10 7 7.6665 -1.1101 -0.9964 11 6 8.3810 -1.6865 -1.9437 12 6 7.7690 -2.2325 -3.0620 13 7 8.2252 -2.8818 -4.1880 14 1 9.1538 -3.0763 -4.3896 15 6 7.1570 -3.2060 -4.9745 16 6 6.0196 -2.7853 -4.3896 17 6 6.3650 -2.1624 -3.1713 18 7 2.0197 -0.6926 1.1994 19 6 2.0825 0.2224 2.3469 20 6 2.5875 -0.5220 3.5559 21 8 2.8670 -1.6991 3.4703 22 7 2.7284 0.1202 4.7324 23 6 3.1872 -0.5571 5.8325 24 1 3.4362 -1.6053 5.7563 25 6 3.3321 0.1048 7.0455 26 7 3.0287 1.3801 7.1385 27 14 3.9579 -0.8179 8.5442 28 1 5.3140 -1.3547 8.2644 29 1 4.0221 0.1072 9.7041 30 1 3.0360 -1.9396 8.8555 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5139 -0.8899 33 1 -0.3634 -1.0276 0.0005 34 1 1.7516 -0.1583 -2.1370 35 1 1.6052 -1.7198 -1.2953 36 1 3.9823 -0.4629 -0.4317 37 1 5.8182 -0.5336 -0.2468 38 1 9.4557 -1.7338 -1.8472 39 1 7.2156 -3.7214 -5.9218 40 1 5.0206 -2.9036 -4.7827 41 1 1.4495 -1.4980 1.4099 42 1 2.7589 1.0460 2.1182 43 1 1.0871 0.6162 2.5525 44 1 2.5045 1.0615 4.8010 45 1 3.1302 1.8423 7.9851 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001567032664.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:16:36 Heat of formation + Delta-G solvation = -26.955189 kcal Electronic energy + Delta-G solvation = -28996.111294 eV Core-core repulsion = 24819.866784 eV Total energy + Delta-G solvation = -4176.244510 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -42.77928 -40.66726 -40.11349 -38.95546 -38.08865 -35.95090 -35.04900 -33.64924 -33.24567 -31.98933 -30.99225 -30.63819 -27.94304 -27.40064 -25.71826 -25.09254 -23.62595 -22.22258 -21.95785 -21.48685 -21.07978 -19.90327 -19.46852 -18.35160 -17.80813 -17.70088 -17.15914 -16.70219 -16.52292 -16.33248 -16.10580 -16.01312 -15.72649 -15.69705 -15.28390 -15.17907 -14.67069 -14.35375 -14.20591 -13.81754 -13.68956 -13.61122 -13.42127 -13.39168 -13.33461 -13.06477 -13.01162 -12.75755 -12.51299 -12.40480 -12.11678 -11.87996 -11.47824 -11.39782 -11.20395 -10.48573 -10.31320 -10.02885 -9.98554 -9.66132 -9.32452 -8.97682 -8.44518 -5.92596 -0.55554 0.37500 1.40623 1.42477 1.52970 1.66137 1.93309 2.05496 2.09548 2.23070 2.30702 2.91151 2.93381 3.23287 3.38373 3.55772 3.64973 3.82122 3.86991 3.90362 4.09727 4.12824 4.22407 4.34151 4.37498 4.45741 4.51499 4.64056 4.67482 4.67931 4.73683 4.83602 4.91375 5.01809 5.19179 5.27394 5.39141 5.42990 5.49091 5.57361 5.82905 5.91247 6.12188 6.38373 6.57450 6.58227 6.63236 6.91601 7.15687 7.22863 7.60215 8.15959 8.72566 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.011403 B = 0.002405 C = 0.002056 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2454.850342 B =11639.591133 C =13615.224566 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.076 3.924 3 H 0.101 0.899 4 C 0.136 3.864 5 N -0.702 5.702 6 C 0.560 3.440 7 O -0.574 6.574 8 C -0.172 4.172 9 C 0.101 3.899 10 N -0.502 5.502 11 C 0.148 3.852 12 C 0.007 3.993 13 N -0.554 5.554 14 H 0.443 0.557 15 C 0.108 3.892 16 C -0.240 4.240 17 C -0.049 4.049 18 N -0.676 5.676 19 C 0.066 3.934 20 C 0.438 3.562 21 O -0.623 6.623 22 N -0.574 5.574 23 C -0.332 4.332 24 H 0.077 0.923 25 C -0.012 4.012 26 N -0.920 5.920 27 Si 0.989 3.011 28 H -0.273 1.273 29 H -0.270 1.270 30 H -0.273 1.273 31 H 0.062 0.938 32 H 0.082 0.918 33 H 0.057 0.943 34 H 0.082 0.918 35 H 0.054 0.946 36 H 0.410 0.590 37 H 0.162 0.838 38 H 0.194 0.806 39 H 0.227 0.773 40 H 0.142 0.858 41 H 0.345 0.655 42 H 0.109 0.891 43 H 0.069 0.931 44 H 0.397 0.603 45 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.894 -1.742 -24.974 25.966 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C -0.034 4.034 3 H 0.119 0.881 4 C 0.012 3.988 5 N -0.352 5.352 6 C 0.348 3.652 7 O -0.455 6.455 8 C -0.178 4.178 9 C -0.051 4.051 10 N -0.211 5.211 11 C -0.018 4.018 12 C -0.104 4.104 13 N -0.159 5.159 14 H 0.286 0.714 15 C -0.024 4.024 16 C -0.264 4.264 17 C -0.061 4.061 18 N -0.308 5.308 19 C -0.066 4.066 20 C 0.225 3.775 21 O -0.510 6.510 22 N -0.211 5.211 23 C -0.462 4.462 24 H 0.095 0.905 25 C -0.212 4.212 26 N -0.561 5.561 27 Si 0.813 3.187 28 H -0.199 1.199 29 H -0.195 1.195 30 H -0.198 1.198 31 H 0.081 0.919 32 H 0.101 0.899 33 H 0.076 0.924 34 H 0.100 0.900 35 H 0.073 0.927 36 H 0.248 0.752 37 H 0.179 0.821 38 H 0.211 0.789 39 H 0.244 0.756 40 H 0.160 0.840 41 H 0.164 0.836 42 H 0.127 0.873 43 H 0.087 0.913 44 H 0.231 0.769 45 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 7.803 -2.260 -24.945 26.234 hybrid contribution -0.925 -0.107 0.978 1.350 sum 6.878 -2.367 -23.967 25.047 Atomic orbital electron populations 1.22372 0.94645 1.02852 1.03579 1.21882 0.94543 0.98467 0.88519 0.88078 1.21412 0.79093 1.00655 0.97616 1.45750 1.08376 1.58368 1.22757 1.18108 0.86964 0.77764 0.82386 1.90689 1.70381 1.49763 1.34699 1.20409 0.93565 1.06177 0.97644 1.22777 0.90134 0.96280 0.95861 1.67652 1.08041 1.17553 1.27847 1.22541 1.01448 0.91686 0.86128 1.19374 0.93463 1.04148 0.93370 1.41794 1.10556 1.47925 1.15584 0.71444 1.22839 0.84318 0.97784 0.97449 1.20913 1.00207 1.08970 0.96313 1.18569 0.92920 0.98793 0.95771 1.60144 1.58554 1.09137 1.02969 1.21580 1.01384 0.95267 0.88410 1.20941 0.83316 0.88006 0.85201 1.90510 1.56581 1.18409 1.85468 1.41920 1.58412 1.12593 1.08186 1.19590 1.42136 0.95858 0.88581 0.90515 1.25987 0.97321 0.96612 1.01299 1.69655 1.48688 1.09589 1.28139 0.85041 0.78708 0.77869 0.77050 1.19852 1.19487 1.19789 0.91879 0.89862 0.92356 0.90026 0.92711 0.75243 0.82117 0.78945 0.75616 0.84049 0.83556 0.87293 0.91330 0.76949 0.91349 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.03 9.16 71.98 0.66 -2.37 16 2 C 0.08 1.57 2.75 44.92 0.12 1.69 16 3 H 0.10 1.82 7.80 -2.39 -0.02 1.80 16 4 C 0.14 3.17 5.37 86.38 0.46 3.63 16 5 N -0.70 -18.65 5.34 -466.39 -2.49 -21.14 16 6 C 0.56 17.31 7.77 86.65 0.67 17.99 16 7 O -0.57 -20.32 15.22 -4.08 -0.06 -20.38 16 8 C -0.17 -5.02 5.91 -19.87 -0.12 -5.14 16 9 C 0.10 2.82 10.71 84.92 0.91 3.73 16 10 N -0.50 -13.40 10.30 -194.57 -2.00 -15.40 16 11 C 0.15 2.93 11.21 84.79 0.95 3.88 16 12 C 0.01 0.14 7.31 38.99 0.29 0.42 16 13 N -0.55 -5.80 6.13 -187.55 -1.15 -6.95 16 14 H 0.44 0.83 8.96 -92.71 -0.83 0.00 16 15 C 0.11 1.23 11.84 83.13 0.98 2.22 16 16 C -0.24 -5.28 10.09 22.15 0.22 -5.06 16 17 C -0.05 -1.28 6.04 -21.14 -0.13 -1.40 16 18 N -0.68 -19.35 5.32 -495.58 -2.63 -21.99 16 19 C 0.07 2.06 5.97 85.56 0.51 2.57 16 20 C 0.44 20.18 7.82 87.66 0.69 20.86 16 21 O -0.62 -34.04 15.78 -3.06 -0.05 -34.09 16 22 N -0.57 -28.93 5.29 -306.99 -1.62 -30.55 16 23 C -0.33 -18.81 9.68 84.04 0.81 -17.99 16 24 H 0.08 4.66 7.16 -2.91 -0.02 4.64 16 25 C -0.01 -0.66 5.50 84.93 0.47 -0.20 16 26 N -0.92 -49.47 13.05 21.66 0.28 -49.18 16 27 Si 0.99 43.18 29.55 68.60 2.03 45.21 16 28 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 29 H -0.27 -11.10 7.11 99.48 0.71 -10.39 16 30 H -0.27 -11.76 7.11 99.48 0.71 -11.06 16 31 H 0.06 1.11 7.45 -2.39 -0.02 1.09 16 32 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 33 H 0.06 1.06 8.13 -2.39 -0.02 1.04 16 34 H 0.08 1.72 8.14 -2.39 -0.02 1.70 16 35 H 0.05 1.42 8.14 -2.38 -0.02 1.41 16 36 H 0.41 10.56 6.21 -92.71 -0.58 9.99 16 37 H 0.16 4.21 6.42 -2.91 -0.02 4.19 16 38 H 0.19 2.15 8.06 -2.91 -0.02 2.13 16 39 H 0.23 0.25 8.06 -2.91 -0.02 0.23 16 40 H 0.14 3.53 7.19 -2.91 -0.02 3.51 16 41 H 0.35 10.96 8.17 -89.69 -0.73 10.23 16 42 H 0.11 2.97 8.06 -2.39 -0.02 2.95 16 43 H 0.07 1.87 7.44 -2.39 -0.02 1.86 16 44 H 0.40 18.91 7.90 -92.71 -0.73 18.18 16 45 H 0.28 14.01 8.31 -92.71 -0.77 13.24 16 Total: -1.00 -80.96 384.16 -1.98 -82.94 By element: Atomic # 1 Polarization: 48.47 SS G_CDS: -1.78 Total: 46.69 kcal Atomic # 6 Polarization: 17.33 SS G_CDS: 7.50 Total: 24.83 kcal Atomic # 7 Polarization: -135.59 SS G_CDS: -9.62 Total: -145.21 kcal Atomic # 8 Polarization: -54.35 SS G_CDS: -0.11 Total: -54.46 kcal Atomic # 14 Polarization: 43.18 SS G_CDS: 2.03 Total: 45.21 kcal Total: -80.96 -1.98 -82.94 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001567032664.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.989 kcal (2) G-P(sol) polarization free energy of solvation -80.965 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.976 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.979 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.944 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.955 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds