Wall clock time and date at job start Wed Apr 1 2020 04:45:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08999 * 109.47143 * 2 1 4 4 C 1.52993 * 109.47457 * 120.00458 * 2 1 3 5 5 N 1.46496 * 109.47551 * 175.00099 * 4 2 1 6 6 C 1.34777 * 120.00258 * 180.02562 * 5 4 2 7 7 O 1.21610 * 120.00257 * 359.97438 * 6 5 4 8 8 C 1.47396 * 119.99956 * 179.97438 * 6 5 4 9 9 N 1.31572 * 126.82443 * 359.68705 * 8 6 5 10 10 N 1.28380 * 111.96826 * 179.80682 * 9 8 6 11 11 H 0.96998 * 124.37485 * 180.15707 * 10 9 8 12 12 C 1.37050 * 111.25455 * 0.47493 * 10 9 8 13 13 C 1.39118 * 134.72634 * 179.72180 * 12 10 9 14 14 C 1.36678 * 119.78795 * 179.97438 * 13 12 10 15 15 C 1.38904 * 120.89491 * 0.02562 * 14 13 12 16 16 C 1.36728 * 120.51944 * 359.94009 * 15 14 13 17 17 C 1.39185 * 119.51055 * 0.07639 * 16 15 14 18 18 N 1.46908 * 109.46910 * 240.00394 * 2 1 3 19 19 C 1.46894 * 110.99925 * 85.00061 * 18 2 1 20 20 C 1.50700 * 109.47004 * 179.97438 * 19 18 2 21 21 O 1.21293 * 120.00189 * 0.02562 * 20 19 18 22 22 N 1.34778 * 120.00119 * 179.97438 * 20 19 18 23 23 C 1.37092 * 120.00057 * 180.02562 * 22 20 19 24 24 H 1.08004 * 120.00606 * 359.97438 * 23 22 20 25 25 C 1.38957 * 120.00177 * 180.02562 * 23 22 20 26 26 N 1.31413 * 119.99815 * 359.97438 * 25 23 22 27 27 Si 1.86798 * 120.00250 * 180.02562 * 25 23 22 28 28 H 1.48498 * 109.47306 * 89.99314 * 27 25 23 29 29 H 1.48500 * 109.47150 * 210.00060 * 27 25 23 30 30 H 1.48500 * 109.46847 * 329.99672 * 27 25 23 31 31 H 1.08999 * 109.47143 * 180.02562 * 1 2 3 32 32 H 1.09005 * 109.47098 * 299.99782 * 1 2 3 33 33 H 1.09001 * 109.47387 * 59.99917 * 1 2 3 34 34 H 1.09000 * 109.47250 * 54.99877 * 4 2 1 35 35 H 1.09004 * 109.46862 * 294.99900 * 4 2 1 36 36 H 0.96999 * 119.99694 * 359.97438 * 5 4 2 37 37 H 1.08000 * 120.11037 * 0.02562 * 13 12 10 38 38 H 1.07997 * 119.55752 * 180.02562 * 14 13 12 39 39 H 1.07994 * 119.74641 * 179.97438 * 15 14 13 40 40 H 1.07995 * 120.24094 * 180.02562 * 16 15 14 41 41 H 1.00901 * 110.99457 * 208.95117 * 18 2 1 42 42 H 1.09004 * 109.46951 * 299.99413 * 19 18 2 43 43 H 1.08998 * 109.47686 * 59.99715 * 19 18 2 44 44 H 0.96999 * 119.99809 * 0.02562 * 22 20 19 45 45 H 0.97001 * 119.99936 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7213 1.2491 5 7 3.5001 -0.8264 1.1905 6 6 4.1730 -1.4293 2.1905 7 8 3.5684 -1.8856 3.1418 8 6 5.6420 -1.5355 2.1312 9 7 6.4261 -1.0972 1.1698 10 7 7.6637 -1.3378 1.4123 11 1 8.3949 -1.0905 0.8250 12 6 7.8175 -1.9956 2.6047 13 6 8.9062 -2.4840 3.3200 14 6 8.7057 -3.1108 4.5179 15 6 7.4261 -3.2691 5.0346 16 6 6.3387 -2.7980 4.3526 17 6 6.5207 -2.1569 3.1307 18 7 2.0196 -0.6925 -1.1996 19 6 2.0824 0.2227 -2.3469 20 6 2.5884 -0.5214 -3.5558 21 8 2.8687 -1.6983 -3.4701 22 7 2.7285 0.1208 -4.7324 23 6 3.1884 -0.5562 -5.8323 24 1 3.4387 -1.6040 -5.7559 25 6 3.3334 0.1059 -7.0453 26 7 3.0292 1.3810 -7.1383 27 14 3.9592 -0.8167 -8.5441 28 1 2.8099 -1.3988 -9.2827 29 1 4.6942 0.1206 -9.4311 30 1 4.8712 -1.9053 -8.1100 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5138 0.8900 33 1 -0.3634 0.5138 -0.8900 34 1 1.6055 -1.7199 1.2950 35 1 1.7517 -0.1584 2.1369 36 1 3.9823 -0.4628 0.4315 37 1 9.9068 -2.3675 2.9304 38 1 9.5535 -3.4881 5.0703 39 1 7.2889 -3.7677 5.9827 40 1 5.3459 -2.9232 4.7587 41 1 2.9173 -1.1204 -1.0288 42 1 1.0870 0.6164 -2.5525 43 1 2.7588 1.0463 -2.1182 44 1 2.5041 1.0619 -4.8010 45 1 3.1308 1.8434 -7.9850 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001567076262.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:45:23 Heat of formation + Delta-G solvation = 18.497791 kcal Electronic energy + Delta-G solvation = -28817.107000 eV Core-core repulsion = 24642.833480 eV Total energy + Delta-G solvation = -4174.273520 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -42.75491 -39.68197 -38.38264 -38.05755 -36.93508 -34.14761 -33.74439 -32.80576 -31.32430 -30.88726 -30.52284 -30.07040 -26.93764 -26.24964 -24.20287 -23.82302 -23.25025 -22.59166 -20.66072 -20.27166 -19.30218 -18.54250 -17.94770 -17.79226 -17.01660 -16.25931 -16.13094 -15.92704 -15.58617 -15.46954 -15.26605 -14.62030 -14.48110 -14.40899 -14.26642 -13.86902 -13.84580 -13.41384 -12.79628 -12.60680 -12.52776 -12.47688 -12.34157 -11.88675 -11.73682 -11.66998 -11.55060 -11.41525 -11.24925 -11.08602 -10.84942 -10.46047 -10.40569 -10.28996 -10.22699 -9.51880 -9.24471 -9.10796 -8.47210 -8.41731 -8.12018 -7.97029 -6.42774 -3.83402 0.51889 1.03801 1.63398 2.37002 2.92149 3.09599 3.16887 3.25480 3.31247 3.50194 3.89449 4.01334 4.07439 4.16248 4.28292 4.45434 4.65328 4.66640 4.85601 4.99626 5.06921 5.15815 5.20646 5.24647 5.30139 5.33729 5.53783 5.63944 5.70147 5.75086 5.79355 5.87923 5.96621 5.99980 6.09819 6.16062 6.19663 6.25286 6.36707 6.47031 6.68089 7.16307 7.22255 7.53414 7.54286 7.58814 8.01025 8.05288 8.60364 9.17042 9.53309 10.04918 10.74952 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.011179 B = 0.002321 C = 0.001982 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2504.145165 B =12059.237883 C =14120.951964 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.071 3.929 3 H 0.050 0.950 4 C 0.118 3.882 5 N -0.717 5.717 6 C 0.610 3.390 7 O -0.529 6.529 8 C 0.001 3.999 9 N -0.199 5.199 10 N -0.411 5.411 11 H 0.449 0.551 12 C 0.063 3.937 13 C -0.119 4.119 14 C -0.084 4.084 15 C -0.141 4.141 16 C -0.043 4.043 17 C -0.108 4.108 18 N -0.664 5.664 19 C 0.049 3.951 20 C 0.440 3.560 21 O -0.582 6.582 22 N -0.564 5.564 23 C -0.298 4.298 24 H 0.103 0.897 25 C 0.022 3.978 26 N -0.902 5.902 27 Si 0.930 3.070 28 H -0.278 1.278 29 H -0.284 1.284 30 H -0.270 1.270 31 H 0.066 0.934 32 H 0.057 0.943 33 H 0.061 0.939 34 H 0.083 0.917 35 H 0.078 0.922 36 H 0.406 0.594 37 H 0.129 0.871 38 H 0.131 0.869 39 H 0.130 0.870 40 H 0.139 0.861 41 H 0.348 0.652 42 H 0.088 0.912 43 H 0.044 0.956 44 H 0.392 0.608 45 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.316 -1.115 23.023 24.504 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.040 4.040 3 H 0.068 0.932 4 C -0.005 4.005 5 N -0.369 5.369 6 C 0.394 3.606 7 O -0.404 6.404 8 C -0.170 4.170 9 N -0.029 5.029 10 N -0.131 5.131 11 H 0.294 0.706 12 C -0.050 4.050 13 C -0.141 4.141 14 C -0.105 4.105 15 C -0.160 4.160 16 C -0.063 4.063 17 C -0.115 4.115 18 N -0.300 5.300 19 C -0.083 4.083 20 C 0.225 3.775 21 O -0.466 6.466 22 N -0.200 5.200 23 C -0.428 4.428 24 H 0.120 0.880 25 C -0.180 4.180 26 N -0.543 5.543 27 Si 0.757 3.243 28 H -0.204 1.204 29 H -0.210 1.210 30 H -0.195 1.195 31 H 0.085 0.915 32 H 0.076 0.924 33 H 0.080 0.920 34 H 0.101 0.899 35 H 0.096 0.904 36 H 0.242 0.758 37 H 0.147 0.853 38 H 0.149 0.851 39 H 0.148 0.852 40 H 0.157 0.843 41 H 0.170 0.830 42 H 0.106 0.894 43 H 0.062 0.938 44 H 0.225 0.775 45 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 7.396 -1.804 22.400 23.658 hybrid contribution 1.713 0.757 -0.847 2.056 sum 9.110 -1.047 21.553 23.423 Atomic orbital electron populations 1.21735 0.93258 1.03015 1.01582 1.21822 0.97187 0.95989 0.88968 0.93239 1.21684 0.78532 1.02370 0.97917 1.45880 1.08313 1.59232 1.23519 1.16559 0.83485 0.77973 0.82550 1.90794 1.68180 1.48095 1.33289 1.22724 0.94115 1.06582 0.93556 1.72946 0.90687 1.15994 1.23258 1.43059 1.05592 1.46904 1.17508 0.70554 1.19228 0.96357 1.00145 0.89240 1.19794 0.96307 1.02187 0.95790 1.20756 0.97643 0.97370 0.94705 1.20866 0.92124 1.02133 1.00908 1.20417 1.00181 0.94046 0.91660 1.19403 0.90790 1.04150 0.97161 1.60143 1.34921 1.32205 1.02704 1.21755 1.01482 0.93815 0.91283 1.19803 0.84983 0.88216 0.84454 1.90535 1.55212 1.16092 1.84728 1.41857 1.57793 1.12430 1.07948 1.19697 1.39868 0.96428 0.86806 0.87952 1.25262 0.97710 0.95778 0.99228 1.69613 1.48728 1.08839 1.27147 0.85860 0.78892 0.78933 0.80619 1.20367 1.20953 1.19460 0.91453 0.92439 0.91951 0.89916 0.90423 0.75812 0.85328 0.85083 0.85193 0.84314 0.83039 0.89360 0.93823 0.77472 0.91888 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.49 9.41 37.16 0.35 -1.14 16 2 C 0.07 0.84 2.81 -67.71 -0.19 0.65 16 3 H 0.05 0.55 7.80 -51.93 -0.40 0.14 16 4 C 0.12 1.38 5.31 -4.05 -0.02 1.36 16 5 N -0.72 -9.01 4.99 -61.40 -0.31 -9.32 16 6 C 0.61 8.60 7.81 -12.53 -0.10 8.50 16 7 O -0.53 -8.43 16.40 5.27 0.09 -8.35 16 8 C 0.00 0.02 7.32 -80.75 -0.59 -0.57 16 9 N -0.20 -2.46 11.80 34.46 0.41 -2.05 16 10 N -0.41 -3.99 6.85 32.34 0.22 -3.77 16 11 H 0.45 2.79 8.96 -190.50 -1.71 1.08 16 12 C 0.06 0.64 7.38 -84.21 -0.62 0.02 16 13 C -0.12 -0.90 10.03 -39.82 -0.40 -1.30 16 14 C -0.08 -0.58 9.96 -39.90 -0.40 -0.98 16 15 C -0.14 -1.12 9.98 -39.88 -0.40 -1.52 16 16 C -0.04 -0.45 9.87 -39.78 -0.39 -0.85 16 17 C -0.11 -1.32 6.34 -105.05 -0.67 -1.98 16 18 N -0.66 -10.56 5.93 -107.99 -0.64 -11.20 16 19 C 0.05 0.85 5.96 -4.98 -0.03 0.82 16 20 C 0.44 10.34 7.82 -10.99 -0.09 10.25 16 21 O -0.58 -15.84 15.78 5.55 0.09 -15.76 16 22 N -0.56 -14.21 5.29 -10.96 -0.06 -14.27 16 23 C -0.30 -8.31 9.68 -14.93 -0.14 -8.46 16 24 H 0.10 3.00 7.16 -52.48 -0.38 2.63 16 25 C 0.02 0.58 5.50 -17.46 -0.10 0.49 16 26 N -0.90 -24.44 13.05 55.50 0.72 -23.72 16 27 Si 0.93 21.05 29.55 -169.99 -5.02 16.03 16 28 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 29 H -0.28 -6.28 7.11 56.52 0.40 -5.87 16 30 H -0.27 -6.11 7.11 56.52 0.40 -5.70 16 31 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 32 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 33 H 0.06 0.70 7.45 -51.93 -0.39 0.32 16 34 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 35 H 0.08 0.82 8.14 -51.93 -0.42 0.39 16 36 H 0.41 5.01 7.11 -40.82 -0.29 4.72 16 37 H 0.13 0.62 8.06 -52.49 -0.42 0.20 16 38 H 0.13 0.53 8.06 -52.49 -0.42 0.11 16 39 H 0.13 0.71 8.06 -52.49 -0.42 0.29 16 40 H 0.14 1.48 7.65 -52.49 -0.40 1.07 16 41 H 0.35 5.84 6.41 -39.29 -0.25 5.59 16 42 H 0.09 1.41 7.44 -51.93 -0.39 1.02 16 43 H 0.04 0.67 8.06 -51.93 -0.42 0.25 16 44 H 0.39 9.42 7.90 -40.82 -0.32 9.10 16 45 H 0.27 6.96 8.31 -40.82 -0.34 6.62 16 LS Contribution 387.12 15.07 5.83 5.83 Total: -1.00 -34.60 387.12 -9.49 -44.09 By element: Atomic # 1 Polarization: 24.22 SS G_CDS: -7.04 Total: 17.18 kcal Atomic # 6 Polarization: 9.08 SS G_CDS: -3.78 Total: 5.30 kcal Atomic # 7 Polarization: -64.67 SS G_CDS: 0.35 Total: -64.33 kcal Atomic # 8 Polarization: -24.28 SS G_CDS: 0.17 Total: -24.10 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -5.02 Total: 16.03 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -34.60 -9.49 -44.09 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001567076262.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.590 kcal (2) G-P(sol) polarization free energy of solvation -34.603 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.987 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.489 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.092 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.498 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds