Wall clock time and date at job start Wed Apr 1 2020 04:45:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08999 * 109.47143 * 2 1 4 4 C 1.52993 * 109.47457 * 120.00458 * 2 1 3 5 5 N 1.46496 * 109.47551 * 175.00099 * 4 2 1 6 6 C 1.34777 * 120.00258 * 180.02562 * 5 4 2 7 7 O 1.21610 * 120.00257 * 359.97438 * 6 5 4 8 8 C 1.47396 * 119.99956 * 179.97438 * 6 5 4 9 9 N 1.31572 * 126.82443 * 359.68705 * 8 6 5 10 10 N 1.28380 * 111.96826 * 179.80682 * 9 8 6 11 11 H 0.96998 * 124.37485 * 180.15707 * 10 9 8 12 12 C 1.37050 * 111.25455 * 0.47493 * 10 9 8 13 13 C 1.39118 * 134.72634 * 179.72180 * 12 10 9 14 14 C 1.36678 * 119.78795 * 179.97438 * 13 12 10 15 15 C 1.38904 * 120.89491 * 0.02562 * 14 13 12 16 16 C 1.36728 * 120.51944 * 359.94009 * 15 14 13 17 17 C 1.39185 * 119.51055 * 0.07639 * 16 15 14 18 18 N 1.46908 * 109.46910 * 240.00394 * 2 1 3 19 19 C 1.46894 * 110.99925 * 85.00061 * 18 2 1 20 20 C 1.50700 * 109.47004 * 179.97438 * 19 18 2 21 21 O 1.21293 * 120.00189 * 0.02562 * 20 19 18 22 22 N 1.34778 * 120.00119 * 179.97438 * 20 19 18 23 23 C 1.37092 * 120.00057 * 180.02562 * 22 20 19 24 24 H 1.08004 * 120.00606 * 359.97438 * 23 22 20 25 25 C 1.38957 * 120.00177 * 180.02562 * 23 22 20 26 26 N 1.31413 * 119.99815 * 359.97438 * 25 23 22 27 27 Si 1.86798 * 120.00250 * 180.02562 * 25 23 22 28 28 H 1.48498 * 109.47306 * 89.99314 * 27 25 23 29 29 H 1.48500 * 109.47150 * 210.00060 * 27 25 23 30 30 H 1.48500 * 109.46847 * 329.99672 * 27 25 23 31 31 H 1.08999 * 109.47143 * 180.02562 * 1 2 3 32 32 H 1.09005 * 109.47098 * 299.99782 * 1 2 3 33 33 H 1.09001 * 109.47387 * 59.99917 * 1 2 3 34 34 H 1.09000 * 109.47250 * 54.99877 * 4 2 1 35 35 H 1.09004 * 109.46862 * 294.99900 * 4 2 1 36 36 H 0.96999 * 119.99694 * 359.97438 * 5 4 2 37 37 H 1.08000 * 120.11037 * 0.02562 * 13 12 10 38 38 H 1.07997 * 119.55752 * 180.02562 * 14 13 12 39 39 H 1.07994 * 119.74641 * 179.97438 * 15 14 13 40 40 H 1.07995 * 120.24094 * 180.02562 * 16 15 14 41 41 H 1.00901 * 110.99457 * 208.95117 * 18 2 1 42 42 H 1.09004 * 109.46951 * 299.99413 * 19 18 2 43 43 H 1.08998 * 109.47686 * 59.99715 * 19 18 2 44 44 H 0.96999 * 119.99809 * 0.02562 * 22 20 19 45 45 H 0.97001 * 119.99936 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7213 1.2491 5 7 3.5001 -0.8264 1.1905 6 6 4.1730 -1.4293 2.1905 7 8 3.5684 -1.8856 3.1418 8 6 5.6420 -1.5355 2.1312 9 7 6.4261 -1.0972 1.1698 10 7 7.6637 -1.3378 1.4123 11 1 8.3949 -1.0905 0.8250 12 6 7.8175 -1.9956 2.6047 13 6 8.9062 -2.4840 3.3200 14 6 8.7057 -3.1108 4.5179 15 6 7.4261 -3.2691 5.0346 16 6 6.3387 -2.7980 4.3526 17 6 6.5207 -2.1569 3.1307 18 7 2.0196 -0.6925 -1.1996 19 6 2.0824 0.2227 -2.3469 20 6 2.5884 -0.5214 -3.5558 21 8 2.8687 -1.6983 -3.4701 22 7 2.7285 0.1208 -4.7324 23 6 3.1884 -0.5562 -5.8323 24 1 3.4387 -1.6040 -5.7559 25 6 3.3334 0.1059 -7.0453 26 7 3.0292 1.3810 -7.1383 27 14 3.9592 -0.8167 -8.5441 28 1 2.8099 -1.3988 -9.2827 29 1 4.6942 0.1206 -9.4311 30 1 4.8712 -1.9053 -8.1100 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5138 0.8900 33 1 -0.3634 0.5138 -0.8900 34 1 1.6055 -1.7199 1.2950 35 1 1.7517 -0.1584 2.1369 36 1 3.9823 -0.4628 0.4315 37 1 9.9068 -2.3675 2.9304 38 1 9.5535 -3.4881 5.0703 39 1 7.2889 -3.7677 5.9827 40 1 5.3459 -2.9232 4.7587 41 1 2.9173 -1.1204 -1.0288 42 1 1.0870 0.6164 -2.5525 43 1 2.7588 1.0463 -2.1182 44 1 2.5041 1.0619 -4.8010 45 1 3.1308 1.8434 -7.9850 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001567076262.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:45:22 Heat of formation + Delta-G solvation = -8.815224 kcal Electronic energy + Delta-G solvation = -28818.291381 eV Core-core repulsion = 24642.833480 eV Total energy + Delta-G solvation = -4175.457902 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -43.55370 -40.77281 -40.12632 -38.73331 -38.19632 -35.99343 -35.05193 -33.63485 -33.27703 -32.08976 -31.24643 -30.83175 -28.18127 -27.62396 -25.80117 -24.80869 -24.05393 -23.30039 -21.70398 -21.29155 -21.06589 -19.93336 -19.30854 -18.71585 -18.07766 -17.49192 -17.15143 -16.95106 -16.84259 -16.63418 -16.32467 -16.19578 -15.82662 -15.52517 -15.40126 -15.07342 -14.93946 -14.64142 -14.29694 -13.73564 -13.60809 -13.49244 -13.28801 -13.20001 -12.94741 -12.92017 -12.81614 -12.57733 -12.41987 -12.26752 -12.13025 -12.07373 -11.88553 -11.51720 -11.33473 -11.26848 -10.35652 -10.27345 -10.02185 -9.82452 -9.39180 -9.14039 -8.47472 -5.95926 -0.26917 0.33125 0.79724 1.36888 1.40779 1.53248 1.62198 1.99243 2.04661 2.13730 2.28081 2.78366 2.85889 3.16621 3.19860 3.44048 3.47174 3.64322 3.72220 4.10336 4.16506 4.20756 4.25495 4.38138 4.41401 4.44442 4.45714 4.58700 4.62130 4.72263 4.80820 4.94999 5.02487 5.05710 5.18205 5.19878 5.40134 5.44151 5.45863 5.55064 5.80720 5.87102 6.03450 6.08173 6.23701 6.30851 6.59541 6.67232 6.97417 7.12074 7.55534 8.11259 8.69830 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.011179 B = 0.002321 C = 0.001982 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2504.145165 B =12059.237883 C =14120.951964 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.077 3.923 3 H 0.069 0.931 4 C 0.122 3.878 5 N -0.712 5.712 6 C 0.607 3.393 7 O -0.557 6.557 8 C -0.031 4.031 9 N -0.210 5.210 10 N -0.397 5.397 11 H 0.462 0.538 12 C 0.052 3.948 13 C -0.114 4.114 14 C -0.080 4.080 15 C -0.130 4.130 16 C -0.073 4.073 17 C -0.136 4.136 18 N -0.680 5.680 19 C 0.064 3.936 20 C 0.437 3.563 21 O -0.624 6.624 22 N -0.572 5.572 23 C -0.333 4.333 24 H 0.077 0.923 25 C -0.013 4.013 26 N -0.919 5.919 27 Si 0.992 3.008 28 H -0.272 1.272 29 H -0.269 1.269 30 H -0.274 1.274 31 H 0.055 0.945 32 H 0.084 0.916 33 H 0.059 0.941 34 H 0.069 0.931 35 H 0.094 0.906 36 H 0.407 0.593 37 H 0.162 0.838 38 H 0.170 0.830 39 H 0.156 0.844 40 H 0.125 0.875 41 H 0.340 0.660 42 H 0.108 0.892 43 H 0.070 0.930 44 H 0.397 0.603 45 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.898 -0.553 23.822 25.803 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.033 4.033 3 H 0.086 0.914 4 C -0.001 4.001 5 N -0.364 5.364 6 C 0.392 3.608 7 O -0.434 6.434 8 C -0.200 4.200 9 N -0.042 5.042 10 N -0.120 5.120 11 H 0.311 0.689 12 C -0.061 4.061 13 C -0.135 4.135 14 C -0.101 4.101 15 C -0.149 4.149 16 C -0.094 4.094 17 C -0.143 4.143 18 N -0.316 5.316 19 C -0.068 4.068 20 C 0.224 3.776 21 O -0.510 6.510 22 N -0.209 5.209 23 C -0.462 4.462 24 H 0.095 0.905 25 C -0.212 4.212 26 N -0.560 5.560 27 Si 0.815 3.185 28 H -0.197 1.197 29 H -0.194 1.194 30 H -0.199 1.199 31 H 0.074 0.926 32 H 0.103 0.897 33 H 0.078 0.922 34 H 0.087 0.913 35 H 0.112 0.888 36 H 0.243 0.757 37 H 0.180 0.820 38 H 0.187 0.813 39 H 0.174 0.826 40 H 0.143 0.857 41 H 0.161 0.839 42 H 0.126 0.874 43 H 0.088 0.912 44 H 0.231 0.769 45 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 8.964 -1.199 23.196 24.897 hybrid contribution 1.298 0.545 -1.004 1.729 sum 10.262 -0.654 22.192 24.459 Atomic orbital electron populations 1.21744 0.92136 1.02692 1.02807 1.21900 0.97864 0.96399 0.87118 0.91363 1.21706 0.77980 1.01921 0.98524 1.45876 1.08653 1.58719 1.23118 1.16758 0.84059 0.77606 0.82358 1.90757 1.68866 1.49431 1.34331 1.22690 0.93924 1.08550 0.94870 1.72848 0.91708 1.16323 1.23337 1.43113 1.05200 1.45996 1.17687 0.68897 1.19539 0.96497 1.00694 0.89341 1.20277 0.96940 1.00762 0.95543 1.21242 0.98229 0.96155 0.94445 1.21247 0.91880 1.00433 1.01292 1.20486 1.00738 0.96019 0.92112 1.19697 0.91608 1.05133 0.97910 1.60164 1.34650 1.32878 1.03864 1.21623 1.02647 0.93623 0.88919 1.20893 0.83234 0.87977 0.85485 1.90504 1.56649 1.18287 1.85609 1.41913 1.58254 1.12588 1.08151 1.19636 1.42106 0.95888 0.88618 0.90512 1.26022 0.97278 0.96627 1.01308 1.69668 1.48592 1.09611 1.28118 0.84947 0.78422 0.77835 0.77253 1.19720 1.19415 1.19871 0.92597 0.89735 0.92169 0.91275 0.88781 0.75674 0.82045 0.81285 0.82632 0.85675 0.83926 0.87420 0.91187 0.76910 0.91286 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.71 9.41 71.98 0.68 -2.04 16 2 C 0.08 1.73 2.81 44.91 0.13 1.86 16 3 H 0.07 1.34 7.80 -2.39 -0.02 1.32 16 4 C 0.12 2.82 5.31 86.38 0.46 3.28 16 5 N -0.71 -18.42 4.99 -466.41 -2.33 -20.74 16 6 C 0.61 18.07 7.81 86.65 0.68 18.75 16 7 O -0.56 -18.83 16.40 -4.06 -0.07 -18.89 16 8 C -0.03 -0.87 7.32 43.86 0.32 -0.55 16 9 N -0.21 -5.36 11.80 -44.88 -0.53 -5.89 16 10 N -0.40 -7.61 6.85 -51.60 -0.35 -7.96 16 11 H 0.46 5.36 8.96 -220.04 -1.97 3.39 16 12 C 0.05 1.02 7.38 39.18 0.29 1.31 16 13 C -0.11 -1.42 10.03 22.12 0.22 -1.20 16 14 C -0.08 -0.84 9.96 22.06 0.22 -0.62 16 15 C -0.13 -1.83 9.98 22.08 0.22 -1.61 16 16 C -0.07 -1.59 9.87 22.14 0.22 -1.37 16 17 C -0.14 -3.44 6.34 -20.14 -0.13 -3.56 16 18 N -0.68 -21.40 5.93 -495.58 -2.94 -24.34 16 19 C 0.06 2.15 5.96 85.56 0.51 2.66 16 20 C 0.44 20.80 7.82 87.66 0.69 21.49 16 21 O -0.62 -35.05 15.78 -3.07 -0.05 -35.10 16 22 N -0.57 -29.27 5.29 -306.98 -1.62 -30.90 16 23 C -0.33 -18.97 9.68 84.04 0.81 -18.15 16 24 H 0.08 4.69 7.16 -2.91 -0.02 4.67 16 25 C -0.01 -0.67 5.50 84.93 0.47 -0.20 16 26 N -0.92 -49.37 13.05 21.67 0.28 -49.09 16 27 Si 0.99 43.00 29.55 68.60 2.03 45.03 16 28 H -0.27 -11.49 7.11 99.48 0.71 -10.78 16 29 H -0.27 -11.00 7.11 99.48 0.71 -10.29 16 30 H -0.27 -11.95 7.11 99.48 0.71 -11.25 16 31 H 0.05 1.25 8.14 -2.39 -0.02 1.23 16 32 H 0.08 1.24 8.14 -2.38 -0.02 1.22 16 33 H 0.06 1.24 7.45 -2.39 -0.02 1.22 16 34 H 0.07 1.80 8.14 -2.39 -0.02 1.78 16 35 H 0.09 1.90 8.14 -2.38 -0.02 1.88 16 36 H 0.41 10.31 7.11 -92.71 -0.66 9.65 16 37 H 0.16 0.90 8.06 -2.91 -0.02 0.87 16 38 H 0.17 0.52 8.06 -2.91 -0.02 0.49 16 39 H 0.16 1.30 8.06 -2.91 -0.02 1.28 16 40 H 0.13 2.92 7.65 -2.91 -0.02 2.90 16 41 H 0.34 11.61 6.41 -89.69 -0.58 11.03 16 42 H 0.11 3.24 7.44 -2.38 -0.02 3.22 16 43 H 0.07 2.01 8.06 -2.39 -0.02 1.99 16 44 H 0.40 19.18 7.90 -92.71 -0.73 18.44 16 45 H 0.28 13.95 8.31 -92.71 -0.77 13.18 16 Total: -1.00 -77.70 387.12 -2.65 -80.35 By element: Atomic # 1 Polarization: 50.33 SS G_CDS: -2.85 Total: 47.48 kcal Atomic # 6 Polarization: 14.27 SS G_CDS: 5.78 Total: 20.05 kcal Atomic # 7 Polarization: -131.43 SS G_CDS: -7.49 Total: -138.91 kcal Atomic # 8 Polarization: -53.88 SS G_CDS: -0.12 Total: -53.99 kcal Atomic # 14 Polarization: 43.00 SS G_CDS: 2.03 Total: 45.03 kcal Total: -77.70 -2.65 -80.35 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001567076262.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.534 kcal (2) G-P(sol) polarization free energy of solvation -77.704 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.169 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.646 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.350 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.815 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds