Wall clock time and date at job start Wed Apr 1 2020 05:19:33
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52997 * 1
3 3 H 1.09000 * 109.47140 * 2 1
4 4 C 1.53006 * 109.47164 * 119.99948 * 2 1 3
5 5 N 1.46497 * 109.47007 * 175.00315 * 4 2 1
6 6 C 1.34778 * 119.99881 * 180.02562 * 5 4 2
7 7 O 1.21669 * 119.99795 * 359.97438 * 6 5 4
8 8 C 1.46924 * 120.00260 * 179.97438 * 6 5 4
9 9 C 1.36350 * 126.82711 * 359.68610 * 8 6 5
10 10 N 1.35577 * 109.75196 * 179.82575 * 9 8 6
11 11 H 0.97003 * 124.72233 * 180.18082 * 10 9 8
12 12 C 1.37691 * 110.55723 * 0.45400 * 10 9 8
13 13 N 1.32674 * 132.94569 * 179.72800 * 12 10 9
14 14 C 1.31607 * 121.69024 * 180.02562 * 13 12 10
15 15 C 1.38586 * 121.54383 * 359.97438 * 14 13 12
16 16 C 1.38339 * 119.32470 * 0.02562 * 15 14 13
17 17 C 1.39348 * 118.05445 * 359.97438 * 16 15 14
18 18 N 1.46902 * 109.47489 * 239.99592 * 2 1 3
19 19 C 1.46901 * 110.99865 * 85.00085 * 18 2 1
20 20 C 1.50697 * 109.47446 * 180.02562 * 19 18 2
21 21 O 1.21296 * 119.99612 * 359.97438 * 20 19 18
22 22 N 1.34774 * 120.00161 * 180.02562 * 20 19 18
23 23 C 1.37103 * 119.99987 * 180.02562 * 22 20 19
24 24 H 1.07996 * 119.99663 * 359.97438 * 23 22 20
25 25 C 1.38943 * 119.99807 * 179.97438 * 23 22 20
26 26 N 1.31410 * 120.00656 * 359.97438 * 25 23 22
27 27 Si 1.86802 * 119.99778 * 179.97438 * 25 23 22
28 28 H 1.48498 * 109.47123 * 359.97438 * 27 25 23
29 29 H 1.48502 * 109.47359 * 119.99792 * 27 25 23
30 30 H 1.48505 * 109.47019 * 240.00061 * 27 25 23
31 31 H 1.09000 * 109.47140 * 179.97438 * 1 2 3
32 32 H 1.09001 * 109.47375 * 300.00017 * 1 2 3
33 33 H 1.09002 * 109.46777 * 60.00573 * 1 2 3
34 34 H 1.09007 * 109.46744 * 294.99886 * 4 2 1
35 35 H 1.08995 * 109.46794 * 55.00131 * 4 2 1
36 36 H 0.96993 * 120.00553 * 359.97438 * 5 4 2
37 37 H 1.07999 * 125.12347 * 359.97438 * 9 8 6
38 38 H 1.08001 * 119.22834 * 180.02562 * 14 13 12
39 39 H 1.08000 * 120.33639 * 179.97438 * 15 14 13
40 40 H 1.08001 * 120.97431 * 179.97438 * 16 15 14
41 41 H 1.00897 * 110.99993 * 208.95314 * 18 2 1
42 42 H 1.09005 * 109.47362 * 300.00272 * 19 18 2
43 43 H 1.09000 * 109.47455 * 59.99836 * 19 18 2
44 44 H 0.96994 * 119.99986 * 359.97438 * 22 20 19
45 45 H 0.96996 * 120.00788 * 180.02562 * 26 25 23
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8933 1.0277 0.0000
4 6 2.0400 -0.7213 1.2493
5 7 3.5000 -0.8263 1.1906
6 6 4.1730 -1.4291 2.1908
7 8 3.5679 -1.8856 3.1425
8 6 5.6372 -1.5350 2.1317
9 6 6.4500 -1.0809 1.1356
10 7 7.7425 -1.3580 1.4367
11 1 8.5015 -1.1281 0.8781
12 6 7.8275 -2.0166 2.6429
13 7 8.8492 -2.4908 3.3439
14 6 8.6733 -3.0976 4.4984
15 6 7.4100 -3.2715 5.0410
16 6 6.3066 -2.7973 4.3543
17 6 6.5187 -2.1585 3.1342
18 7 2.0197 -0.6926 -1.1994
19 6 2.0826 0.2225 -2.3469
20 6 2.5875 -0.5219 -3.5560
21 8 2.8679 -1.6989 -3.4701
22 7 2.7284 0.1204 -4.7324
23 6 3.1873 -0.5570 -5.8326
24 1 3.4362 -1.6051 -5.7563
25 6 3.3321 0.1050 -7.0455
26 7 3.0288 1.3802 -7.1385
27 14 3.9580 -0.8177 -8.5443
28 1 4.2268 -2.2316 -8.1785
29 1 2.9338 -0.7700 -9.6184
30 1 5.2117 -0.1850 -9.0272
31 1 -0.3633 -1.0277 -0.0005
32 1 -0.3634 0.5138 0.8900
33 1 -0.3633 0.5138 -0.8901
34 1 1.7516 -0.1582 2.1370
35 1 1.6054 -1.7198 1.2952
36 1 3.9824 -0.4627 0.4317
37 1 6.1149 -0.5745 0.2425
38 1 9.5337 -3.4679 5.0360
39 1 7.2881 -3.7727 5.9898
40 1 5.3099 -2.9187 4.7522
41 1 2.9174 -1.1205 -1.0286
42 1 1.0871 0.6162 -2.5526
43 1 2.7589 1.0461 -2.1182
44 1 2.5045 1.0616 -4.8010
45 1 3.1295 1.8423 -7.9854
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001567079651.mol2 45
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 05:19:33
Heat of formation + Delta-G solvation = 2.666777 kcal
Electronic energy + Delta-G solvation = -28829.415117 eV
Core-core repulsion = 24654.455112 eV
Total energy + Delta-G solvation = -4174.960005 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 345.159 amu
Computer time = 1.00 seconds
Orbital eigenvalues (eV)
-41.98625 -39.63834 -38.45554 -38.11108 -36.94103 -34.17167 -33.76341 -33.19135
-31.42190 -31.04445 -30.47520 -29.64855 -26.81266 -26.11983 -24.10496 -24.03004
-22.99246 -22.79251 -20.69337 -19.95447 -19.33581 -18.81196 -17.96870 -17.23425
-16.91530 -16.35243 -16.16804 -15.88357 -15.59151 -15.42418 -15.24498 -15.02479
-14.59658 -14.43517 -13.92900 -13.88945 -13.59942 -13.40711 -13.18385 -12.82659
-12.75345 -12.58995 -12.47162 -12.33645 -11.93980 -11.78158 -11.69665 -11.46273
-11.14359 -10.89555 -10.66020 -10.39430 -10.28586 -10.22572 -9.65117 -9.58448
-9.24052 -8.86311 -8.53820 -8.44617 -8.18529 -8.02982 -6.48216 -3.89241
0.58133 1.01174 1.71095 2.32988 2.99170 3.11405 3.22779 3.23305
3.29700 3.65739 3.82683 3.99280 4.13487 4.23175 4.27823 4.39638
4.63131 4.66777 4.86840 4.92941 4.96624 5.10240 5.13736 5.18951
5.21512 5.27102 5.52801 5.53895 5.63626 5.73619 5.74901 5.90896
5.93681 5.96130 6.01822 6.08490 6.15083 6.22126 6.34883 6.53084
6.80946 7.10176 7.33190 7.49324 7.52116 7.65946 7.99782 8.12846
8.54070 9.11514 9.47219 9.98249 10.69386
Molecular weight = 345.16amu
Principal moments of inertia in cm(-1)
A = 0.011189 B = 0.002314 C = 0.001977
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2501.935718 B =12099.398308 C =14158.233410
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.138 4.138
2 C 0.071 3.929
3 H 0.049 0.951
4 C 0.121 3.879
5 N -0.730 5.730
6 C 0.594 3.406
7 O -0.541 6.541
8 C -0.221 4.221
9 C 0.126 3.874
10 N -0.563 5.563
11 H 0.426 0.574
12 C 0.277 3.723
13 N -0.496 5.496
14 C 0.135 3.865
15 C -0.197 4.197
16 C -0.019 4.019
17 C -0.107 4.107
18 N -0.664 5.664
19 C 0.049 3.951
20 C 0.438 3.562
21 O -0.582 6.582
22 N -0.563 5.563
23 C -0.299 4.299
24 H 0.104 0.896
25 C 0.022 3.978
26 N -0.901 5.901
27 Si 0.929 3.071
28 H -0.268 1.268
29 H -0.281 1.281
30 H -0.282 1.282
31 H 0.066 0.934
32 H 0.057 0.943
33 H 0.061 0.939
34 H 0.075 0.925
35 H 0.080 0.920
36 H 0.396 0.604
37 H 0.188 0.812
38 H 0.162 0.838
39 H 0.140 0.860
40 H 0.145 0.855
41 H 0.347 0.653
42 H 0.088 0.912
43 H 0.043 0.957
44 H 0.392 0.608
45 H 0.271 0.729
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 6.058 0.103 21.089 21.942
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.197 4.197
2 C -0.039 4.039
3 H 0.067 0.933
4 C -0.003 4.003
5 N -0.382 5.382
6 C 0.382 3.618
7 O -0.419 6.419
8 C -0.232 4.232
9 C -0.007 4.007
10 N -0.168 5.168
11 H 0.265 0.735
12 C 0.045 3.955
13 N -0.209 5.209
14 C -0.030 4.030
15 C -0.218 4.218
16 C -0.045 4.045
17 C -0.114 4.114
18 N -0.299 5.299
19 C -0.084 4.084
20 C 0.224 3.776
21 O -0.466 6.466
22 N -0.199 5.199
23 C -0.429 4.429
24 H 0.121 0.879
25 C -0.179 4.179
26 N -0.542 5.542
27 Si 0.756 3.244
28 H -0.192 1.192
29 H -0.207 1.207
30 H -0.208 1.208
31 H 0.085 0.915
32 H 0.076 0.924
33 H 0.080 0.920
34 H 0.093 0.907
35 H 0.098 0.902
36 H 0.230 0.770
37 H 0.205 0.795
38 H 0.180 0.820
39 H 0.158 0.842
40 H 0.163 0.837
41 H 0.168 0.832
42 H 0.106 0.894
43 H 0.061 0.939
44 H 0.225 0.775
45 H 0.081 0.919
Dipole moment (debyes) X Y Z Total
from point charges 6.116 -0.981 21.037 21.930
hybrid contribution 0.705 1.038 -1.183 1.725
sum 6.822 0.056 19.853 20.992
Atomic orbital electron populations
1.21736 0.93338 1.03022 1.01561 1.21823 0.97203 0.95899 0.88986
0.93314 1.21606 0.78902 1.02163 0.97617 1.45853 1.08176 1.60568
1.23606 1.17084 0.85332 0.77287 0.82067 1.90766 1.69609 1.48199
1.33357 1.19947 0.92733 1.12644 0.97898 1.22248 0.82038 0.97598
0.98809 1.41329 1.08497 1.49212 1.17728 0.73500 1.18352 0.90407
0.98118 0.88664 1.66486 1.33311 1.12948 1.08142 1.22473 0.97098
0.93752 0.89704 1.21980 0.93199 1.04347 1.02311 1.21150 1.00179
0.91838 0.91381 1.19404 0.92400 1.03108 0.96497 1.60108 1.34781
1.32294 1.02730 1.21763 1.01567 0.93743 0.91288 1.19804 0.85117
0.88224 0.84483 1.90540 1.55290 1.16056 1.84746 1.41877 1.57675
1.12420 1.07975 1.19746 1.39913 0.96436 0.86778 0.87861 1.25263
0.97630 0.95780 0.99253 1.69611 1.48604 1.08863 1.27142 0.85811
0.78249 0.79640 0.80723 1.19204 1.20687 1.20768 0.91466 0.92442
0.91998 0.90680 0.90168 0.76974 0.79489 0.82050 0.84235 0.83747
0.83216 0.89354 0.93886 0.77471 0.91878
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -1.43 9.41 37.16 0.35 -1.08 16
2 C 0.07 0.78 2.81 -67.71 -0.19 0.59 16
3 H 0.05 0.48 7.80 -51.93 -0.40 0.08 16
4 C 0.12 1.31 5.31 -4.04 -0.02 1.29 16
5 N -0.73 -7.82 4.98 -61.54 -0.31 -8.13 16
6 C 0.59 7.66 7.80 -12.74 -0.10 7.56 16
7 O -0.54 -8.60 16.26 5.22 0.08 -8.52 16
8 C -0.22 -2.56 6.27 -103.36 -0.65 -3.21 16
9 C 0.13 1.09 11.33 -16.58 -0.19 0.90 16
10 N -0.56 -4.94 5.97 -11.97 -0.07 -5.01 16
11 H 0.43 2.58 8.96 -40.82 -0.37 2.22 16
12 C 0.28 3.19 8.41 -155.53 -1.31 1.88 16
13 N -0.50 -5.61 10.39 -12.29 -0.13 -5.74 16
14 C 0.14 1.20 11.14 -17.52 -0.20 1.00 16
15 C -0.20 -1.69 10.11 -39.42 -0.40 -2.08 16
16 C -0.02 -0.21 9.97 -39.13 -0.39 -0.60 16
17 C -0.11 -1.32 6.28 -104.93 -0.66 -1.98 16
18 N -0.66 -9.66 5.93 -107.99 -0.64 -10.30 16
19 C 0.05 0.78 5.96 -4.98 -0.03 0.75 16
20 C 0.44 9.74 7.82 -10.99 -0.09 9.66 16
21 O -0.58 -15.11 15.78 5.54 0.09 -15.02 16
22 N -0.56 -13.59 5.29 -10.97 -0.06 -13.65 16
23 C -0.30 -8.07 9.68 -14.93 -0.14 -8.21 16
24 H 0.10 2.95 7.16 -52.49 -0.38 2.57 16
25 C 0.02 0.58 5.50 -17.47 -0.10 0.49 16
26 N -0.90 -23.80 13.05 55.50 0.72 -23.07 16
27 Si 0.93 20.52 29.55 -169.99 -5.02 15.50 16
28 H -0.27 -5.94 7.11 56.52 0.40 -5.54 16
29 H -0.28 -6.15 7.11 56.52 0.40 -5.74 16
30 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16
31 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16
32 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16
33 H 0.06 0.67 7.45 -51.93 -0.39 0.28 16
34 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16
35 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16
36 H 0.40 3.55 6.26 -40.82 -0.26 3.30 16
37 H 0.19 0.98 7.38 -52.49 -0.39 0.59 16
38 H 0.16 0.87 8.06 -52.49 -0.42 0.45 16
39 H 0.14 0.77 8.06 -52.49 -0.42 0.34 16
40 H 0.14 1.59 7.55 -52.49 -0.40 1.20 16
41 H 0.35 5.13 6.41 -39.29 -0.25 4.88 16
42 H 0.09 1.33 7.44 -51.93 -0.39 0.94 16
43 H 0.04 0.59 8.06 -51.93 -0.42 0.17 16
44 H 0.39 9.04 7.90 -40.82 -0.32 8.71 16
45 H 0.27 6.78 8.31 -40.82 -0.34 6.44 16
LS Contribution 385.68 15.07 5.81 5.81
Total: -1.00 -35.46 385.68 -9.25 -44.71
By element:
Atomic # 1 Polarization: 22.09 SS G_CDS: -5.62 Total: 16.47 kcal
Atomic # 6 Polarization: 11.05 SS G_CDS: -4.10 Total: 6.95 kcal
Atomic # 7 Polarization: -65.42 SS G_CDS: -0.48 Total: -65.90 kcal
Atomic # 8 Polarization: -23.71 SS G_CDS: 0.17 Total: -23.54 kcal
Atomic # 14 Polarization: 20.52 SS G_CDS: -5.02 Total: 15.50 kcal
Total LS contribution 5.81 Total: 5.81 kcal
Total: -35.46 -9.25 -44.71 kcal
The number of atoms in the molecule is 45
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001567079651.mol2 45
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 47.375 kcal
(2) G-P(sol) polarization free energy of solvation -35.463 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.912 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.246 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.708 kcal
(6) G-S(sol) free energy of system = (1) + (5) 2.667 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.00 seconds