Wall clock time and date at job start Wed Apr 1 2020 04:40:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.46801 * 2 1 4 4 C 1.52997 * 109.47127 * 239.99728 * 2 1 3 5 5 N 1.46895 * 109.46918 * 185.00194 * 4 2 1 6 6 C 1.46908 * 110.99864 * 180.02562 * 5 4 2 7 7 C 1.50696 * 109.46912 * 179.97438 * 6 5 4 8 8 O 1.21293 * 120.00517 * 0.02562 * 7 6 5 9 9 N 1.34785 * 119.99759 * 179.97438 * 7 6 5 10 10 C 1.37098 * 119.99820 * 180.02562 * 9 7 6 11 11 H 1.07997 * 120.00078 * 359.97438 * 10 9 7 12 12 C 1.38951 * 119.99541 * 180.02562 * 10 9 7 13 13 N 1.31412 * 119.99532 * 179.97438 * 12 10 9 14 14 Si 1.86795 * 120.00303 * 359.97438 * 12 10 9 15 15 H 1.48494 * 109.47222 * 90.00394 * 14 12 10 16 16 H 1.48498 * 109.47185 * 210.00512 * 14 12 10 17 17 H 1.48499 * 109.46831 * 330.00175 * 14 12 10 18 18 N 1.46500 * 109.46998 * 119.99942 * 2 1 3 19 19 C 1.34773 * 119.99910 * 275.00232 * 18 2 1 20 20 O 1.21646 * 120.00452 * 359.97438 * 19 18 2 21 21 C 1.47279 * 120.00082 * 180.02562 * 19 18 2 22 22 C 1.38436 * 120.03069 * 179.97438 * 21 19 18 23 23 C 1.40664 * 118.26998 * 179.97438 * 22 21 19 24 24 C 1.38256 * 133.39897 * 180.02562 * 23 22 21 25 25 C 1.39676 * 106.99387 * 179.97438 * 24 23 22 26 26 C 1.35642 * 108.08558 * 359.97438 * 25 24 23 27 27 N 1.35913 * 109.05974 * 0.02562 * 26 25 24 28 28 C 1.36902 * 132.43024 * 180.02562 * 27 26 25 29 29 N 1.29792 * 121.48111 * 179.75301 * 28 27 26 30 30 H 1.09001 * 109.47002 * 59.99846 * 1 2 3 31 31 H 1.08993 * 109.46955 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.47050 * 300.00112 * 1 2 3 33 33 H 1.08998 * 109.47192 * 305.00392 * 4 2 1 34 34 H 1.08998 * 109.46934 * 65.00238 * 4 2 1 35 35 H 1.00902 * 111.00298 * 56.04947 * 5 4 2 36 36 H 1.08999 * 109.47023 * 300.00086 * 6 5 4 37 37 H 1.08996 * 109.47022 * 59.99922 * 6 5 4 38 38 H 0.96996 * 119.99928 * 0.02562 * 9 7 6 39 39 H 0.97001 * 120.00154 * 179.97438 * 13 12 10 40 40 H 0.96995 * 120.00293 * 94.99410 * 18 2 1 41 41 H 1.07994 * 120.86782 * 359.97438 * 22 21 19 42 42 H 1.07994 * 126.50199 * 359.97055 * 24 23 22 43 43 H 1.07999 * 125.95747 * 179.97438 * 25 24 23 44 44 H 1.08002 * 125.47533 * 180.02562 * 26 25 24 45 45 H 1.08004 * 119.25454 * 359.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2492 5 7 3.5040 -0.8267 -1.1903 6 6 4.0304 -1.5150 -2.3766 7 6 5.5318 -1.6035 -2.2811 8 8 6.1067 -1.1393 -1.3192 9 7 6.2356 -2.1993 -3.2641 10 6 7.6014 -2.2803 -3.1770 11 1 8.1134 -1.8663 -2.3209 12 6 8.3270 -2.8940 -4.1907 13 7 9.6362 -2.9712 -4.1074 14 14 7.4415 -3.6095 -5.6717 15 1 7.3214 -2.5707 -6.7260 16 1 8.2125 -4.7636 -6.1994 17 1 6.0866 -4.0628 -5.2668 18 7 2.0184 -0.6906 1.1962 19 6 2.1470 -0.0182 2.3571 20 8 1.8581 1.1621 2.4117 21 6 2.6384 -0.7123 3.5596 22 6 2.7713 -0.0222 4.7522 23 6 3.2435 -0.7216 5.8776 24 6 3.4901 -0.3568 7.1882 25 6 3.9541 -1.4966 7.8488 26 6 3.9839 -2.5177 6.9564 27 7 3.5545 -2.0647 5.7491 28 6 3.3960 -2.6781 4.5355 29 7 2.9563 -2.0297 3.5007 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 -0.3633 0.5139 0.8900 33 1 1.6054 -1.7198 -1.2951 34 1 1.7517 -0.1584 -2.1369 35 1 3.7996 -1.2884 -0.3432 36 1 3.6096 -2.5190 -2.4308 37 1 3.7559 -0.9572 -3.2719 38 1 5.7758 -2.5708 -4.0331 39 1 10.1428 -3.4000 -4.8148 40 1 2.2490 -1.6317 1.1527 41 1 2.5191 1.0259 4.8170 42 1 3.3505 0.6235 7.6193 43 1 4.2395 -1.5548 8.8888 44 1 4.2984 -3.5284 7.1707 45 1 3.6390 -3.7259 4.4380 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001568999685.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:40:00 Heat of formation + Delta-G solvation = 25.446414 kcal Electronic energy + Delta-G solvation = -28860.494387 eV Core-core repulsion = 24686.522182 eV Total energy + Delta-G solvation = -4173.972206 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 3.87 seconds Orbital eigenvalues (eV) -42.71152 -40.04941 -38.51894 -37.77025 -36.74567 -34.33662 -33.70603 -33.46982 -31.69413 -31.55108 -30.95984 -28.64051 -27.76650 -25.17220 -24.78698 -23.91883 -23.10598 -21.75214 -21.22175 -20.57750 -19.41189 -19.03422 -18.38654 -17.78431 -16.57997 -16.38579 -16.14645 -15.96205 -15.79169 -15.43874 -15.02193 -14.85356 -14.69033 -14.38206 -14.28751 -13.98045 -13.25080 -13.16215 -13.10938 -12.97683 -12.80235 -12.73106 -12.70505 -12.41332 -12.26517 -11.93222 -11.81376 -11.67149 -11.18317 -11.05840 -10.93463 -10.77273 -10.60335 -10.12040 -9.98009 -9.57699 -9.33275 -9.20670 -8.59513 -8.20429 -8.15536 -7.87171 -6.31345 -3.82763 0.09798 0.82504 2.18458 2.45548 2.54093 2.94532 3.01393 3.06354 3.14241 3.46056 3.61833 3.73725 4.01684 4.09959 4.21054 4.30301 4.45633 4.73462 4.81058 4.82214 4.89242 5.08151 5.08593 5.16496 5.22568 5.24883 5.36025 5.38582 5.51772 5.56381 5.63017 5.69774 5.78307 5.82238 5.91236 5.92354 6.04834 6.17458 6.33139 6.39348 6.70951 7.03838 7.18532 7.47107 7.52763 7.58092 8.07880 8.14289 8.59660 8.94853 9.42121 9.82706 10.81852 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.010976 B = 0.002356 C = 0.002027 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2550.477957 B =11882.426561 C =13808.635762 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.143 3.857 3 H 0.100 0.900 4 C 0.051 3.949 5 N -0.668 5.668 6 C 0.048 3.952 7 C 0.449 3.551 8 O -0.563 6.563 9 N -0.591 5.591 10 C -0.305 4.305 11 H 0.119 0.881 12 C 0.041 3.959 13 N -0.882 5.882 14 Si 0.881 3.119 15 H -0.270 1.270 16 H -0.277 1.277 17 H -0.270 1.270 18 N -0.704 5.704 19 C 0.586 3.414 20 O -0.536 6.536 21 C 0.008 3.992 22 C -0.036 4.036 23 C 0.023 3.977 24 C -0.169 4.169 25 C -0.147 4.147 26 C -0.025 4.025 27 N -0.388 5.388 28 C 0.311 3.689 29 N -0.467 5.467 30 H 0.069 0.931 31 H 0.056 0.944 32 H 0.062 0.938 33 H 0.033 0.967 34 H 0.089 0.911 35 H 0.351 0.649 36 H 0.045 0.955 37 H 0.089 0.911 38 H 0.370 0.630 39 H 0.273 0.727 40 H 0.407 0.593 41 H 0.163 0.837 42 H 0.152 0.848 43 H 0.153 0.847 44 H 0.178 0.822 45 H 0.209 0.791 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.823 -1.502 17.826 26.702 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.038 3.962 3 H 0.118 0.882 4 C -0.079 4.079 5 N -0.301 5.301 6 C -0.085 4.085 7 C 0.235 3.765 8 O -0.445 6.445 9 N -0.231 5.231 10 C -0.433 4.433 11 H 0.137 0.863 12 C -0.162 4.162 13 N -0.522 5.522 14 Si 0.707 3.293 15 H -0.196 1.196 16 H -0.202 1.202 17 H -0.196 1.196 18 N -0.355 5.355 19 C 0.372 3.628 20 O -0.413 6.413 21 C -0.109 4.109 22 C -0.059 4.059 23 C -0.081 4.081 24 C -0.195 4.195 25 C -0.170 4.170 26 C -0.156 4.156 27 N -0.061 5.061 28 C 0.028 3.972 29 N -0.179 5.179 30 H 0.088 0.912 31 H 0.075 0.925 32 H 0.081 0.919 33 H 0.051 0.949 34 H 0.107 0.893 35 H 0.171 0.829 36 H 0.063 0.937 37 H 0.107 0.893 38 H 0.203 0.797 39 H 0.084 0.916 40 H 0.242 0.758 41 H 0.181 0.819 42 H 0.170 0.830 43 H 0.170 0.830 44 H 0.195 0.805 45 H 0.226 0.774 Dipole moment (debyes) X Y Z Total from point charges -19.511 -0.181 17.009 25.884 hybrid contribution -0.421 -1.786 -0.441 1.888 sum -19.932 -1.968 16.568 25.993 Atomic orbital electron populations 1.22150 0.94858 1.02147 1.02829 1.21105 0.93550 0.98583 0.82957 0.88192 1.22302 0.88732 0.99060 0.97810 1.60008 1.07617 1.57523 1.04982 1.21722 0.94875 0.97122 0.94792 1.19712 0.88018 0.83805 0.84975 1.90579 1.71001 1.50042 1.32834 1.42203 1.07859 1.52968 1.20023 1.19431 0.79535 1.35925 1.08433 0.86326 1.25044 0.95447 0.97696 0.98034 1.69624 1.05069 1.43451 1.34029 0.86658 0.79512 0.79778 0.83344 1.19584 1.20203 1.19551 1.45794 1.66106 1.14463 1.09117 1.17307 0.77401 0.85794 0.82335 1.90818 1.50924 1.14813 1.84757 1.20782 1.05644 0.89793 0.94725 1.21682 0.93562 1.01491 0.89115 1.18900 1.08814 0.83901 0.96495 1.21184 1.07234 1.00215 0.90873 1.21077 1.03882 0.92130 0.99892 1.22029 1.09559 1.01317 0.82684 1.43169 1.43107 1.10369 1.09407 1.24787 0.95026 0.99209 0.78132 1.68138 1.13732 1.08983 1.27070 0.91240 0.92502 0.91851 0.94872 0.89313 0.82906 0.93715 0.89312 0.79702 0.91622 0.75752 0.81904 0.83019 0.82965 0.80531 0.77446 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.49 9.48 37.16 0.35 -1.14 16 2 C 0.14 1.64 2.88 -67.93 -0.20 1.45 16 3 H 0.10 1.38 7.58 -51.93 -0.39 0.99 16 4 C 0.05 0.58 5.30 -3.83 -0.02 0.56 16 5 N -0.67 -10.49 6.12 -115.06 -0.70 -11.19 16 6 C 0.05 0.79 6.17 -4.97 -0.03 0.75 16 7 C 0.45 10.32 7.82 -10.98 -0.09 10.23 16 8 O -0.56 -15.45 15.78 5.55 0.09 -15.37 16 9 N -0.59 -14.16 5.09 -10.96 -0.06 -14.21 16 10 C -0.30 -8.69 10.16 -14.93 -0.15 -8.84 16 11 H 0.12 3.88 7.39 -52.49 -0.39 3.49 16 12 C 0.04 1.12 5.50 -17.47 -0.10 1.02 16 13 N -0.88 -25.89 13.96 55.50 0.77 -25.11 16 14 Si 0.88 19.37 27.74 -169.99 -4.71 14.66 16 15 H -0.27 -5.85 7.11 56.52 0.40 -5.44 16 16 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 17 H -0.27 -5.38 6.52 56.52 0.37 -5.01 16 18 N -0.70 -8.61 4.35 -54.92 -0.24 -8.85 16 19 C 0.59 8.23 7.75 -12.59 -0.10 8.13 16 20 O -0.54 -8.79 16.00 5.24 0.08 -8.71 16 21 C 0.01 0.10 6.78 -82.43 -0.56 -0.46 16 22 C -0.04 -0.42 9.72 -38.59 -0.38 -0.80 16 23 C 0.02 0.25 6.78 -83.95 -0.57 -0.32 16 24 C -0.17 -1.47 10.98 -39.04 -0.43 -1.89 16 25 C -0.15 -1.04 10.80 -39.97 -0.43 -1.47 16 26 C -0.02 -0.17 11.61 -16.67 -0.19 -0.36 16 27 N -0.39 -3.54 2.95 -62.17 -0.18 -3.73 16 28 C 0.31 2.71 12.16 -89.23 -1.09 1.63 16 29 N -0.47 -5.24 9.59 -10.42 -0.10 -5.34 16 30 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 33 H 0.03 0.33 8.14 -51.93 -0.42 -0.10 16 34 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 35 H 0.35 5.85 7.28 -39.29 -0.29 5.57 16 36 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 37 H 0.09 1.30 8.14 -51.93 -0.42 0.87 16 38 H 0.37 7.74 5.76 -40.82 -0.24 7.50 16 39 H 0.27 7.39 8.31 -40.82 -0.34 7.05 16 40 H 0.41 4.60 7.48 -40.82 -0.31 4.30 16 41 H 0.16 1.74 7.66 -52.49 -0.40 1.34 16 42 H 0.15 1.02 8.06 -52.49 -0.42 0.60 16 43 H 0.15 0.68 8.06 -52.49 -0.42 0.26 16 44 H 0.18 0.61 8.06 -52.49 -0.42 0.18 16 45 H 0.21 0.92 8.06 -52.48 -0.42 0.50 16 LS Contribution 386.85 15.07 5.83 5.83 Total: -1.00 -37.00 386.85 -9.02 -46.02 By element: Atomic # 1 Polarization: 23.33 SS G_CDS: -5.83 Total: 17.50 kcal Atomic # 6 Polarization: 12.46 SS G_CDS: -3.97 Total: 8.50 kcal Atomic # 7 Polarization: -67.93 SS G_CDS: -0.51 Total: -68.43 kcal Atomic # 8 Polarization: -24.25 SS G_CDS: 0.17 Total: -24.08 kcal Atomic # 14 Polarization: 19.37 SS G_CDS: -4.71 Total: 14.66 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -37.00 -9.02 -46.02 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001568999685.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.467 kcal (2) G-P(sol) polarization free energy of solvation -37.004 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.463 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.016 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.021 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.446 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.87 seconds