Wall clock time and date at job start Wed Apr 1 2020 04:39:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.46801 * 2 1 4 4 C 1.52997 * 109.47127 * 239.99728 * 2 1 3 5 5 N 1.46895 * 109.46918 * 185.00194 * 4 2 1 6 6 C 1.46908 * 110.99864 * 180.02562 * 5 4 2 7 7 C 1.50696 * 109.46912 * 179.97438 * 6 5 4 8 8 O 1.21293 * 120.00517 * 0.02562 * 7 6 5 9 9 N 1.34785 * 119.99759 * 179.97438 * 7 6 5 10 10 C 1.37098 * 119.99820 * 180.02562 * 9 7 6 11 11 H 1.07997 * 120.00078 * 359.97438 * 10 9 7 12 12 C 1.38951 * 119.99541 * 180.02562 * 10 9 7 13 13 N 1.31412 * 119.99532 * 179.97438 * 12 10 9 14 14 Si 1.86795 * 120.00303 * 359.97438 * 12 10 9 15 15 H 1.48494 * 109.47222 * 90.00394 * 14 12 10 16 16 H 1.48498 * 109.47185 * 210.00512 * 14 12 10 17 17 H 1.48499 * 109.46831 * 330.00175 * 14 12 10 18 18 N 1.46500 * 109.46998 * 119.99942 * 2 1 3 19 19 C 1.34773 * 119.99910 * 275.00232 * 18 2 1 20 20 O 1.21646 * 120.00452 * 359.97438 * 19 18 2 21 21 C 1.47279 * 120.00082 * 180.02562 * 19 18 2 22 22 C 1.38436 * 120.03069 * 179.97438 * 21 19 18 23 23 C 1.40664 * 118.26998 * 179.97438 * 22 21 19 24 24 C 1.38256 * 133.39897 * 180.02562 * 23 22 21 25 25 C 1.39676 * 106.99387 * 179.97438 * 24 23 22 26 26 C 1.35642 * 108.08558 * 359.97438 * 25 24 23 27 27 N 1.35913 * 109.05974 * 0.02562 * 26 25 24 28 28 C 1.36902 * 132.43024 * 180.02562 * 27 26 25 29 29 N 1.29792 * 121.48111 * 179.75301 * 28 27 26 30 30 H 1.09001 * 109.47002 * 59.99846 * 1 2 3 31 31 H 1.08993 * 109.46955 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.47050 * 300.00112 * 1 2 3 33 33 H 1.08998 * 109.47192 * 305.00392 * 4 2 1 34 34 H 1.08998 * 109.46934 * 65.00238 * 4 2 1 35 35 H 1.00902 * 111.00298 * 56.04947 * 5 4 2 36 36 H 1.08999 * 109.47023 * 300.00086 * 6 5 4 37 37 H 1.08996 * 109.47022 * 59.99922 * 6 5 4 38 38 H 0.96996 * 119.99928 * 0.02562 * 9 7 6 39 39 H 0.97001 * 120.00154 * 179.97438 * 13 12 10 40 40 H 0.96995 * 120.00293 * 94.99410 * 18 2 1 41 41 H 1.07994 * 120.86782 * 359.97438 * 22 21 19 42 42 H 1.07994 * 126.50199 * 359.97055 * 24 23 22 43 43 H 1.07999 * 125.95747 * 179.97438 * 25 24 23 44 44 H 1.08002 * 125.47533 * 180.02562 * 26 25 24 45 45 H 1.08004 * 119.25454 * 359.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2492 5 7 3.5040 -0.8267 -1.1903 6 6 4.0304 -1.5150 -2.3766 7 6 5.5318 -1.6035 -2.2811 8 8 6.1067 -1.1393 -1.3192 9 7 6.2356 -2.1993 -3.2641 10 6 7.6014 -2.2803 -3.1770 11 1 8.1134 -1.8663 -2.3209 12 6 8.3270 -2.8940 -4.1907 13 7 9.6362 -2.9712 -4.1074 14 14 7.4415 -3.6095 -5.6717 15 1 7.3214 -2.5707 -6.7260 16 1 8.2125 -4.7636 -6.1994 17 1 6.0866 -4.0628 -5.2668 18 7 2.0184 -0.6906 1.1962 19 6 2.1470 -0.0182 2.3571 20 8 1.8581 1.1621 2.4117 21 6 2.6384 -0.7123 3.5596 22 6 2.7713 -0.0222 4.7522 23 6 3.2435 -0.7216 5.8776 24 6 3.4901 -0.3568 7.1882 25 6 3.9541 -1.4966 7.8488 26 6 3.9839 -2.5177 6.9564 27 7 3.5545 -2.0647 5.7491 28 6 3.3960 -2.6781 4.5355 29 7 2.9563 -2.0297 3.5007 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 -0.3633 0.5139 0.8900 33 1 1.6054 -1.7198 -1.2951 34 1 1.7517 -0.1584 -2.1369 35 1 3.7996 -1.2884 -0.3432 36 1 3.6096 -2.5190 -2.4308 37 1 3.7559 -0.9572 -3.2719 38 1 5.7758 -2.5708 -4.0331 39 1 10.1428 -3.4000 -4.8148 40 1 2.2490 -1.6317 1.1527 41 1 2.5191 1.0259 4.8170 42 1 3.3505 0.6235 7.6193 43 1 4.2395 -1.5548 8.8888 44 1 4.2984 -3.5284 7.1707 45 1 3.6390 -3.7259 4.4380 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001568999685.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:39:57 Heat of formation + Delta-G solvation = -2.825341 kcal Electronic energy + Delta-G solvation = -28861.720343 eV Core-core repulsion = 24686.522182 eV Total energy + Delta-G solvation = -4175.198161 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 4.52 seconds Orbital eigenvalues (eV) -43.36925 -41.04708 -40.29355 -38.56099 -37.84622 -36.09066 -35.16003 -34.21327 -33.75307 -32.40945 -31.75949 -29.38555 -29.11176 -26.67023 -25.63304 -24.78879 -24.38113 -22.50175 -21.94337 -21.53250 -21.29922 -20.31760 -19.78937 -18.67354 -17.79375 -17.48256 -17.14343 -16.89471 -16.84175 -16.62422 -16.38057 -16.04059 -15.66651 -15.54464 -15.36616 -15.17858 -14.96994 -14.48530 -14.20781 -14.11543 -13.81534 -13.58982 -13.50497 -13.34185 -13.24689 -13.15531 -13.05885 -12.82669 -12.69886 -12.41896 -12.01039 -11.95479 -11.72183 -11.62249 -11.52485 -11.09959 -10.48022 -10.26125 -10.18439 -9.94724 -9.34827 -8.58396 -8.42087 -6.03460 -0.69568 0.14379 1.29889 1.36186 1.44921 1.55969 1.58788 1.93445 1.94574 2.03395 2.22982 2.60190 2.68877 2.90946 3.14100 3.34961 3.52787 3.59218 3.83048 3.86795 4.08260 4.12160 4.19479 4.25534 4.31971 4.42973 4.43738 4.55369 4.59797 4.66468 4.66666 4.73469 4.76993 5.03814 5.12971 5.19116 5.25047 5.43350 5.50781 5.51849 5.71736 5.87918 6.01670 6.14078 6.29406 6.32685 6.58871 6.64307 6.87086 7.08467 7.38522 7.95900 8.75752 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.010976 B = 0.002356 C = 0.002027 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2550.477957 B =11882.426561 C =13808.635762 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.141 3.859 3 H 0.069 0.931 4 C 0.058 3.942 5 N -0.693 5.693 6 C 0.062 3.938 7 C 0.446 3.554 8 O -0.618 6.618 9 N -0.589 5.589 10 C -0.330 4.330 11 H 0.052 0.948 12 C -0.017 4.017 13 N -0.935 5.935 14 Si 0.968 3.032 15 H -0.258 1.258 16 H -0.275 1.275 17 H -0.228 1.228 18 N -0.697 5.697 19 C 0.578 3.422 20 O -0.574 6.574 21 C -0.022 4.022 22 C -0.041 4.041 23 C -0.019 4.019 24 C -0.166 4.166 25 C -0.156 4.156 26 C -0.006 4.006 27 N -0.399 5.399 28 C 0.317 3.683 29 N -0.489 5.489 30 H 0.089 0.911 31 H 0.072 0.928 32 H 0.044 0.956 33 H 0.062 0.938 34 H 0.108 0.892 35 H 0.341 0.659 36 H 0.084 0.916 37 H 0.119 0.881 38 H 0.391 0.609 39 H 0.279 0.721 40 H 0.412 0.588 41 H 0.157 0.843 42 H 0.164 0.836 43 H 0.182 0.818 44 H 0.217 0.783 45 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.353 -4.284 16.957 28.382 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.037 3.963 3 H 0.087 0.913 4 C -0.071 4.071 5 N -0.327 5.327 6 C -0.070 4.070 7 C 0.234 3.766 8 O -0.502 6.502 9 N -0.231 5.231 10 C -0.459 4.459 11 H 0.070 0.930 12 C -0.215 4.215 13 N -0.576 5.576 14 Si 0.787 3.213 15 H -0.182 1.182 16 H -0.200 1.200 17 H -0.151 1.151 18 N -0.347 5.347 19 C 0.365 3.635 20 O -0.455 6.455 21 C -0.139 4.139 22 C -0.063 4.063 23 C -0.122 4.122 24 C -0.192 4.192 25 C -0.178 4.178 26 C -0.137 4.137 27 N -0.072 5.072 28 C 0.035 3.965 29 N -0.202 5.202 30 H 0.108 0.892 31 H 0.091 0.909 32 H 0.063 0.937 33 H 0.080 0.920 34 H 0.126 0.874 35 H 0.160 0.840 36 H 0.101 0.899 37 H 0.137 0.863 38 H 0.227 0.773 39 H 0.089 0.911 40 H 0.248 0.752 41 H 0.174 0.826 42 H 0.181 0.819 43 H 0.199 0.801 44 H 0.234 0.766 45 H 0.267 0.733 Dipole moment (debyes) X Y Z Total from point charges -22.088 -2.966 16.117 27.503 hybrid contribution 0.491 -0.898 0.121 1.031 sum -21.597 -3.865 16.238 27.295 Atomic orbital electron populations 1.22060 0.92752 1.03200 1.02906 1.21154 0.95093 0.97050 0.83048 0.91271 1.22374 0.85945 1.00757 0.98005 1.59991 1.10523 1.57828 1.04320 1.21663 0.89153 0.99979 0.96164 1.21073 0.90964 0.81265 0.83324 1.90559 1.73036 1.51716 1.34930 1.42011 1.06093 1.53721 1.21279 1.18991 0.81975 1.37522 1.07421 0.93014 1.26166 0.96219 0.97283 1.01841 1.69813 1.07557 1.44411 1.35798 0.85328 0.79760 0.78782 0.77406 1.18232 1.19977 1.15133 1.45791 1.65435 1.14579 1.08870 1.17642 0.77008 0.85536 0.83279 1.90772 1.52899 1.16330 1.85494 1.20631 1.07887 0.90912 0.94422 1.21719 0.93531 1.01387 0.89706 1.19042 1.11161 0.85115 0.96891 1.21605 1.05717 1.01508 0.90384 1.21533 1.03564 0.91352 1.01352 1.22852 1.06510 1.02903 0.81418 1.43380 1.43674 1.09896 1.10239 1.25633 0.92999 1.00419 0.77483 1.68084 1.15414 1.08256 1.28477 0.89240 0.90856 0.93699 0.92007 0.87396 0.84031 0.89875 0.86316 0.77339 0.91116 0.75161 0.82588 0.81871 0.80085 0.76590 0.73302 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.61 9.48 71.98 0.68 -1.92 16 2 C 0.14 3.21 2.88 44.99 0.13 3.34 16 3 H 0.07 2.01 7.58 -2.39 -0.02 1.99 16 4 C 0.06 1.16 5.30 86.30 0.46 1.61 16 5 N -0.69 -20.82 6.12 -517.95 -3.17 -23.99 16 6 C 0.06 1.87 6.17 85.55 0.53 2.39 16 7 C 0.45 20.37 7.82 87.65 0.69 21.06 16 8 O -0.62 -35.40 15.78 -3.07 -0.05 -35.45 16 9 N -0.59 -27.85 5.09 -306.98 -1.56 -29.42 16 10 C -0.33 -19.53 10.16 84.04 0.85 -18.67 16 11 H 0.05 3.67 7.39 -2.91 -0.02 3.65 16 12 C -0.02 -0.93 5.50 84.93 0.47 -0.46 16 13 N -0.94 -56.74 13.96 21.66 0.30 -56.43 16 14 Si 0.97 38.51 27.74 68.60 1.90 40.41 16 15 H -0.26 -9.77 7.11 99.48 0.71 -9.07 16 16 H -0.27 -10.84 7.11 99.48 0.71 -10.13 16 17 H -0.23 -7.50 6.52 99.48 0.65 -6.85 16 18 N -0.70 -17.60 4.35 -445.91 -1.94 -19.54 16 19 C 0.58 17.59 7.75 86.62 0.67 18.27 16 20 O -0.57 -20.67 16.00 -4.18 -0.07 -20.74 16 21 C -0.02 -0.61 6.78 40.98 0.28 -0.34 16 22 C -0.04 -1.04 9.72 22.91 0.22 -0.82 16 23 C -0.02 -0.40 6.78 38.69 0.26 -0.14 16 24 C -0.17 -2.76 10.98 22.62 0.25 -2.51 16 25 C -0.16 -1.81 10.80 22.02 0.24 -1.58 16 26 C -0.01 -0.06 11.61 83.46 0.97 0.91 16 27 N -0.40 -6.81 2.95 -350.61 -1.04 -7.84 16 28 C 0.32 5.21 12.16 179.86 2.19 7.40 16 29 N -0.49 -11.26 9.59 -186.89 -1.79 -13.06 16 30 H 0.09 1.19 8.14 -2.39 -0.02 1.17 16 31 H 0.07 1.03 8.14 -2.39 -0.02 1.02 16 32 H 0.04 0.95 8.14 -2.39 -0.02 0.93 16 33 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 34 H 0.11 1.78 8.14 -2.39 -0.02 1.76 16 35 H 0.34 11.34 7.28 -89.69 -0.65 10.69 16 36 H 0.08 1.92 8.14 -2.39 -0.02 1.90 16 37 H 0.12 2.91 8.14 -2.39 -0.02 2.89 16 38 H 0.39 15.05 5.76 -92.71 -0.53 14.51 16 39 H 0.28 15.44 8.31 -92.71 -0.77 14.67 16 40 H 0.41 9.40 7.48 -92.71 -0.69 8.71 16 41 H 0.16 3.89 7.66 -2.91 -0.02 3.87 16 42 H 0.16 2.14 8.06 -2.91 -0.02 2.12 16 43 H 0.18 0.97 8.06 -2.91 -0.02 0.95 16 44 H 0.22 0.46 8.06 -2.91 -0.02 0.44 16 45 H 0.25 1.53 8.06 -2.91 -0.02 1.51 16 Total: -1.00 -90.45 386.85 0.59 -89.86 By element: Atomic # 1 Polarization: 48.53 SS G_CDS: -0.88 Total: 47.65 kcal Atomic # 6 Polarization: 19.66 SS G_CDS: 8.88 Total: 28.54 kcal Atomic # 7 Polarization: -141.08 SS G_CDS: -9.19 Total: -150.28 kcal Atomic # 8 Polarization: -56.07 SS G_CDS: -0.12 Total: -56.18 kcal Atomic # 14 Polarization: 38.51 SS G_CDS: 1.90 Total: 40.41 kcal Total: -90.45 0.59 -89.86 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001568999685.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.031 kcal (2) G-P(sol) polarization free energy of solvation -90.450 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.419 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.594 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.856 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.825 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.52 seconds