Wall clock time and date at job start Wed Apr 1 2020 04:42:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09003 * 109.47342 * 2 1 4 4 C 1.53004 * 109.47419 * 120.00283 * 2 1 3 5 5 N 1.46900 * 109.46906 * 174.99714 * 4 2 1 6 6 C 1.46905 * 110.99453 * 180.02562 * 5 4 2 7 7 C 1.50701 * 109.46967 * 180.02562 * 6 5 4 8 8 O 1.21298 * 119.99904 * 0.02562 * 7 6 5 9 9 N 1.34772 * 120.00258 * 179.97438 * 7 6 5 10 10 C 1.37098 * 120.00472 * 179.97438 * 9 7 6 11 11 H 1.07998 * 119.99732 * 0.02562 * 10 9 7 12 12 C 1.38946 * 120.00105 * 179.97438 * 10 9 7 13 13 N 1.31412 * 120.00391 * 0.02562 * 12 10 9 14 14 Si 1.86802 * 119.99862 * 180.02562 * 12 10 9 15 15 H 1.48504 * 109.47280 * 0.02562 * 14 12 10 16 16 H 1.48503 * 109.46964 * 120.00295 * 14 12 10 17 17 H 1.48493 * 109.47516 * 240.00524 * 14 12 10 18 18 N 1.46503 * 109.46931 * 240.00284 * 2 1 3 19 19 C 1.34778 * 119.99932 * 84.99930 * 18 2 1 20 20 O 1.21598 * 119.99955 * 359.97438 * 19 18 2 21 21 C 1.47472 * 119.99553 * 180.02562 * 19 18 2 22 22 C 1.39000 * 120.29750 * 0.06043 * 21 19 18 23 23 C 1.38500 * 120.36702 * 179.97438 * 22 21 19 24 24 C 1.37835 * 120.79004 * 359.97438 * 23 22 21 25 25 C 1.39206 * 120.19648 * 359.97438 * 24 23 22 26 26 N 1.37224 * 133.64914 * 180.02562 * 25 24 23 27 27 H 0.97000 * 125.98367 * 359.97438 * 26 25 24 28 28 N 1.40025 * 108.03313 * 179.97438 * 26 25 24 29 29 C 1.30262 * 109.70667 * 0.02562 * 28 26 25 30 30 C 1.40680 * 119.79474 * 0.02562 * 25 24 23 31 31 H 1.08994 * 109.47242 * 59.99147 * 1 2 3 32 32 H 1.08998 * 109.46916 * 180.02562 * 1 2 3 33 33 H 1.09004 * 109.46700 * 300.00162 * 1 2 3 34 34 H 1.09002 * 109.46814 * 294.99914 * 4 2 1 35 35 H 1.08997 * 109.46930 * 54.99526 * 4 2 1 36 36 H 1.00893 * 111.00450 * 303.95029 * 5 4 2 37 37 H 1.08996 * 109.47016 * 299.99727 * 6 5 4 38 38 H 1.08997 * 109.47328 * 60.00260 * 6 5 4 39 39 H 0.97008 * 119.99921 * 359.97438 * 9 7 6 40 40 H 0.96997 * 120.00151 * 179.97438 * 13 12 10 41 41 H 0.96997 * 119.99858 * 265.00058 * 18 2 1 42 42 H 1.08002 * 119.81661 * 359.95376 * 22 21 19 43 43 H 1.08004 * 119.60652 * 180.26101 * 23 22 21 44 44 H 1.07996 * 119.89750 * 179.97438 * 24 23 22 45 45 H 1.08001 * 125.65071 * 180.02562 * 29 28 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7213 1.2492 5 7 3.5041 -0.8267 1.1902 6 6 4.0303 -1.5160 2.3760 7 6 5.5317 -1.6045 2.2805 8 8 6.1068 -1.1387 1.3194 9 7 6.2356 -2.2003 3.2634 10 6 7.6014 -2.2813 3.1763 11 1 8.1133 -1.8673 2.3202 12 6 8.3270 -2.8950 4.1899 13 7 7.7041 -3.3983 5.2319 14 14 10.1880 -3.0047 4.0716 15 1 10.6423 -2.3666 2.8099 16 1 10.7998 -2.3033 5.2287 17 1 10.6016 -4.4308 4.0822 18 7 2.0183 -0.6906 -1.1962 19 6 2.1469 -0.0181 -2.3572 20 8 1.8573 1.1616 -2.4118 21 6 2.6379 -0.7135 -3.5614 22 6 2.9686 -2.0625 -3.5064 23 6 3.4293 -2.7171 -4.6367 24 6 3.5679 -2.0468 -5.8330 25 6 3.2440 -0.6957 -5.9202 26 7 3.2731 0.2213 -6.9406 27 1 3.5539 0.0499 -7.8531 28 7 2.8266 1.4479 -6.4339 29 6 2.5323 1.3207 -5.1713 30 6 2.7745 -0.0146 -4.7824 31 1 -0.3633 0.5139 -0.8898 32 1 -0.3633 -1.0277 0.0005 33 1 -0.3633 0.5139 0.8900 34 1 1.7517 -0.1584 2.1370 35 1 1.6054 -1.7198 1.2951 36 1 3.7996 -1.2884 0.3432 37 1 3.7559 -0.9590 3.2717 38 1 3.6095 -2.5201 2.4292 39 1 5.7757 -2.5718 4.0325 40 1 8.2106 -3.8271 5.9393 41 1 2.2489 -1.6317 -1.1527 42 1 2.8659 -2.6031 -2.5771 43 1 3.6787 -3.7665 -4.5811 44 1 3.9289 -2.5713 -6.7053 45 1 2.1634 2.1064 -4.5287 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001569073520.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:42:37 Heat of formation + Delta-G solvation = 20.632814 kcal Electronic energy + Delta-G solvation = -29027.439821 eV Core-core repulsion = 24853.258882 eV Total energy + Delta-G solvation = -4174.180939 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 2.54 seconds Orbital eigenvalues (eV) -41.78815 -39.90765 -38.33148 -37.27366 -36.67962 -34.30242 -33.67001 -32.88552 -31.44906 -31.18935 -30.19758 -29.44369 -27.62045 -25.12341 -24.52031 -23.27638 -22.77607 -22.12966 -21.32976 -20.61531 -19.32061 -18.56425 -17.88454 -17.32390 -16.69005 -16.37171 -16.03168 -15.47476 -15.35240 -15.24302 -14.89140 -14.81003 -14.53578 -14.34831 -14.16372 -13.88330 -13.65470 -13.53184 -13.09672 -12.66518 -12.53382 -12.28663 -12.09830 -12.04761 -11.94441 -11.74463 -11.62712 -11.48279 -11.18964 -11.09651 -10.99219 -10.58332 -10.35321 -10.23866 -9.98126 -9.53469 -9.24216 -8.97617 -8.49031 -8.36740 -8.10907 -7.97660 -6.43397 -3.84107 0.20935 1.07405 2.27974 2.42558 2.70312 2.96216 3.15264 3.26135 3.33493 3.62883 3.88645 4.02597 4.22640 4.29511 4.43646 4.50934 4.65303 4.69316 4.83104 4.92144 4.99296 5.16290 5.19528 5.25470 5.30866 5.39243 5.41819 5.54604 5.55188 5.60675 5.74451 5.85382 5.92023 5.95121 6.00576 6.05400 6.16951 6.24017 6.35105 6.41684 6.95893 7.12511 7.29174 7.34766 7.54140 7.57443 8.04983 8.08676 8.59565 9.16629 9.52610 10.04006 10.74393 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.011444 B = 0.002344 C = 0.002067 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2446.092293 B =11942.121387 C =13541.969120 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.144 3.856 3 H 0.101 0.899 4 C 0.050 3.950 5 N -0.667 5.667 6 C 0.050 3.950 7 C 0.439 3.561 8 O -0.581 6.581 9 N -0.564 5.564 10 C -0.298 4.298 11 H 0.103 0.897 12 C 0.022 3.978 13 N -0.902 5.902 14 Si 0.929 3.071 15 H -0.268 1.268 16 H -0.281 1.281 17 H -0.282 1.282 18 N -0.715 5.715 19 C 0.564 3.436 20 O -0.531 6.531 21 C -0.054 4.054 22 C -0.116 4.116 23 C -0.075 4.075 24 C -0.118 4.118 25 C 0.119 3.881 26 N -0.509 5.509 27 H 0.441 0.559 28 N -0.253 5.253 29 C 0.091 3.909 30 C -0.130 4.130 31 H 0.063 0.937 32 H 0.056 0.944 33 H 0.068 0.932 34 H 0.088 0.912 35 H 0.032 0.968 36 H 0.347 0.653 37 H 0.087 0.913 38 H 0.044 0.956 39 H 0.392 0.608 40 H 0.271 0.729 41 H 0.397 0.603 42 H 0.132 0.868 43 H 0.139 0.861 44 H 0.131 0.869 45 H 0.204 0.796 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.957 -0.662 -17.003 23.327 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.040 3.960 3 H 0.119 0.881 4 C -0.080 4.080 5 N -0.300 5.300 6 C -0.083 4.083 7 C 0.225 3.775 8 O -0.465 6.465 9 N -0.201 5.201 10 C -0.428 4.428 11 H 0.121 0.879 12 C -0.180 4.180 13 N -0.543 5.543 14 Si 0.756 3.244 15 H -0.192 1.192 16 H -0.207 1.207 17 H -0.208 1.208 18 N -0.367 5.367 19 C 0.351 3.649 20 O -0.408 6.408 21 C -0.060 4.060 22 C -0.136 4.136 23 C -0.096 4.096 24 C -0.140 4.140 25 C 0.001 3.999 26 N -0.224 5.224 27 H 0.286 0.714 28 N -0.068 5.068 29 C -0.104 4.104 30 C -0.138 4.138 31 H 0.082 0.918 32 H 0.075 0.925 33 H 0.087 0.913 34 H 0.107 0.893 35 H 0.050 0.950 36 H 0.167 0.833 37 H 0.106 0.894 38 H 0.062 0.938 39 H 0.225 0.775 40 H 0.081 0.919 41 H 0.232 0.768 42 H 0.150 0.850 43 H 0.157 0.843 44 H 0.149 0.851 45 H 0.221 0.779 Dipole moment (debyes) X Y Z Total from point charges -15.537 1.889 -18.260 24.050 hybrid contribution 0.731 -2.495 0.654 2.680 sum -14.806 -0.605 -17.607 23.013 Atomic orbital electron populations 1.22150 0.94885 1.02121 1.02865 1.21083 0.93483 0.98618 0.82805 0.88127 1.22320 0.88842 0.99013 0.97850 1.60014 1.07467 1.57554 1.04955 1.21696 0.95165 0.96935 0.94481 1.19807 0.88079 0.84291 0.85339 1.90541 1.71099 1.51349 1.33542 1.41871 1.07429 1.50895 1.19868 1.19750 0.81505 1.34959 1.06548 0.87877 1.25260 1.00687 0.96814 0.95209 1.69616 1.36613 1.38700 1.09406 0.85808 0.82255 0.77860 0.78482 1.19198 1.20730 1.20776 1.45926 1.67197 1.13924 1.09703 1.18024 0.77552 0.86464 0.82870 1.90733 1.49903 1.15268 1.84944 1.19455 1.00777 0.93598 0.92157 1.21166 1.00103 0.93135 0.99229 1.20931 0.97001 1.00243 0.91376 1.20239 1.03902 0.90516 0.99374 1.18827 0.99739 0.92277 0.89022 1.46111 1.59616 1.05560 1.11139 0.71373 1.76810 1.15253 1.02695 1.12007 1.24226 0.97836 0.96484 0.91846 1.18665 1.07574 0.94389 0.93221 0.91780 0.92535 0.91298 0.89328 0.94953 0.83292 0.89431 0.93841 0.77474 0.91926 0.76758 0.85005 0.84325 0.85138 0.77943 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.39 9.48 37.16 0.35 -1.04 16 2 C 0.14 1.54 2.88 -67.93 -0.20 1.34 16 3 H 0.10 1.32 7.58 -51.93 -0.39 0.93 16 4 C 0.05 0.54 5.30 -3.82 -0.02 0.52 16 5 N -0.67 -10.13 6.12 -115.05 -0.70 -10.83 16 6 C 0.05 0.83 6.17 -4.97 -0.03 0.80 16 7 C 0.44 10.15 7.82 -10.99 -0.09 10.07 16 8 O -0.58 -15.63 15.78 5.54 0.09 -15.55 16 9 N -0.56 -14.04 5.29 -10.96 -0.06 -14.10 16 10 C -0.30 -8.23 9.68 -14.93 -0.14 -8.38 16 11 H 0.10 3.01 7.16 -52.49 -0.38 2.63 16 12 C 0.02 0.58 5.50 -17.47 -0.10 0.48 16 13 N -0.90 -24.27 13.05 55.50 0.72 -23.54 16 14 Si 0.93 20.90 29.55 -169.99 -5.02 15.88 16 15 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 16 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 17 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 18 N -0.72 -7.51 4.31 -54.86 -0.24 -7.74 16 19 C 0.56 7.13 7.73 -12.50 -0.10 7.03 16 20 O -0.53 -8.06 14.60 5.28 0.08 -7.99 16 21 C -0.05 -0.62 5.90 -104.67 -0.62 -1.24 16 22 C -0.12 -1.04 9.52 -39.20 -0.37 -1.41 16 23 C -0.07 -0.57 10.00 -39.63 -0.40 -0.97 16 24 C -0.12 -0.94 10.06 -39.37 -0.40 -1.34 16 25 C 0.12 1.23 7.32 -84.17 -0.62 0.61 16 26 N -0.51 -4.94 7.45 32.35 0.24 -4.70 16 27 H 0.44 2.75 8.96 -182.65 -1.64 1.11 16 28 N -0.25 -3.07 12.58 30.81 0.39 -2.68 16 29 C 0.09 1.14 11.23 -17.10 -0.19 0.95 16 30 C -0.13 -1.59 6.00 -106.68 -0.64 -2.23 16 31 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 33 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 34 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 35 H 0.03 0.30 8.14 -51.93 -0.42 -0.12 16 36 H 0.35 5.39 7.28 -39.30 -0.29 5.10 16 37 H 0.09 1.35 8.14 -51.93 -0.42 0.93 16 38 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 39 H 0.39 9.29 7.90 -40.82 -0.32 8.97 16 40 H 0.27 6.88 8.31 -40.82 -0.34 6.54 16 41 H 0.40 3.36 6.18 -40.82 -0.25 3.11 16 42 H 0.13 0.88 6.38 -52.49 -0.33 0.55 16 43 H 0.14 0.68 8.06 -52.48 -0.42 0.26 16 44 H 0.13 0.67 8.06 -52.49 -0.42 0.25 16 45 H 0.20 2.42 6.95 -52.49 -0.36 2.06 16 LS Contribution 384.43 15.07 5.79 5.79 Total: -1.00 -35.09 384.43 -9.17 -44.26 By element: Atomic # 1 Polarization: 22.91 SS G_CDS: -6.91 Total: 16.00 kcal Atomic # 6 Polarization: 8.75 SS G_CDS: -3.55 Total: 5.20 kcal Atomic # 7 Polarization: -63.95 SS G_CDS: 0.35 Total: -63.60 kcal Atomic # 8 Polarization: -23.70 SS G_CDS: 0.16 Total: -23.53 kcal Atomic # 14 Polarization: 20.90 SS G_CDS: -5.02 Total: 15.88 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -35.09 -9.17 -44.26 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001569073520.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.888 kcal (2) G-P(sol) polarization free energy of solvation -35.089 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.799 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.166 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.255 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.633 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.55 seconds