Wall clock time and date at job start Wed Apr 1 2020 04:42:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09003 * 109.47342 * 2 1 4 4 C 1.53004 * 109.47419 * 120.00283 * 2 1 3 5 5 N 1.46900 * 109.46906 * 174.99714 * 4 2 1 6 6 C 1.46905 * 110.99453 * 180.02562 * 5 4 2 7 7 C 1.50701 * 109.46967 * 180.02562 * 6 5 4 8 8 O 1.21298 * 119.99904 * 0.02562 * 7 6 5 9 9 N 1.34772 * 120.00258 * 179.97438 * 7 6 5 10 10 C 1.37098 * 120.00472 * 179.97438 * 9 7 6 11 11 H 1.07998 * 119.99732 * 0.02562 * 10 9 7 12 12 C 1.38946 * 120.00105 * 179.97438 * 10 9 7 13 13 N 1.31412 * 120.00391 * 0.02562 * 12 10 9 14 14 Si 1.86802 * 119.99862 * 180.02562 * 12 10 9 15 15 H 1.48504 * 109.47280 * 0.02562 * 14 12 10 16 16 H 1.48503 * 109.46964 * 120.00295 * 14 12 10 17 17 H 1.48493 * 109.47516 * 240.00524 * 14 12 10 18 18 N 1.46503 * 109.46931 * 240.00284 * 2 1 3 19 19 C 1.34778 * 119.99932 * 84.99930 * 18 2 1 20 20 O 1.21598 * 119.99955 * 359.97438 * 19 18 2 21 21 C 1.47472 * 119.99553 * 180.02562 * 19 18 2 22 22 C 1.39000 * 120.29750 * 0.06043 * 21 19 18 23 23 C 1.38500 * 120.36702 * 179.97438 * 22 21 19 24 24 C 1.37835 * 120.79004 * 359.97438 * 23 22 21 25 25 C 1.39206 * 120.19648 * 359.97438 * 24 23 22 26 26 N 1.37224 * 133.64914 * 180.02562 * 25 24 23 27 27 H 0.97000 * 125.98367 * 359.97438 * 26 25 24 28 28 N 1.40025 * 108.03313 * 179.97438 * 26 25 24 29 29 C 1.30262 * 109.70667 * 0.02562 * 28 26 25 30 30 C 1.40680 * 119.79474 * 0.02562 * 25 24 23 31 31 H 1.08994 * 109.47242 * 59.99147 * 1 2 3 32 32 H 1.08998 * 109.46916 * 180.02562 * 1 2 3 33 33 H 1.09004 * 109.46700 * 300.00162 * 1 2 3 34 34 H 1.09002 * 109.46814 * 294.99914 * 4 2 1 35 35 H 1.08997 * 109.46930 * 54.99526 * 4 2 1 36 36 H 1.00893 * 111.00450 * 303.95029 * 5 4 2 37 37 H 1.08996 * 109.47016 * 299.99727 * 6 5 4 38 38 H 1.08997 * 109.47328 * 60.00260 * 6 5 4 39 39 H 0.97008 * 119.99921 * 359.97438 * 9 7 6 40 40 H 0.96997 * 120.00151 * 179.97438 * 13 12 10 41 41 H 0.96997 * 119.99858 * 265.00058 * 18 2 1 42 42 H 1.08002 * 119.81661 * 359.95376 * 22 21 19 43 43 H 1.08004 * 119.60652 * 180.26101 * 23 22 21 44 44 H 1.07996 * 119.89750 * 179.97438 * 24 23 22 45 45 H 1.08001 * 125.65071 * 180.02562 * 29 28 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7213 1.2492 5 7 3.5041 -0.8267 1.1902 6 6 4.0303 -1.5160 2.3760 7 6 5.5317 -1.6045 2.2805 8 8 6.1068 -1.1387 1.3194 9 7 6.2356 -2.2003 3.2634 10 6 7.6014 -2.2813 3.1763 11 1 8.1133 -1.8673 2.3202 12 6 8.3270 -2.8950 4.1899 13 7 7.7041 -3.3983 5.2319 14 14 10.1880 -3.0047 4.0716 15 1 10.6423 -2.3666 2.8099 16 1 10.7998 -2.3033 5.2287 17 1 10.6016 -4.4308 4.0822 18 7 2.0183 -0.6906 -1.1962 19 6 2.1469 -0.0181 -2.3572 20 8 1.8573 1.1616 -2.4118 21 6 2.6379 -0.7135 -3.5614 22 6 2.9686 -2.0625 -3.5064 23 6 3.4293 -2.7171 -4.6367 24 6 3.5679 -2.0468 -5.8330 25 6 3.2440 -0.6957 -5.9202 26 7 3.2731 0.2213 -6.9406 27 1 3.5539 0.0499 -7.8531 28 7 2.8266 1.4479 -6.4339 29 6 2.5323 1.3207 -5.1713 30 6 2.7745 -0.0146 -4.7824 31 1 -0.3633 0.5139 -0.8898 32 1 -0.3633 -1.0277 0.0005 33 1 -0.3633 0.5139 0.8900 34 1 1.7517 -0.1584 2.1370 35 1 1.6054 -1.7198 1.2951 36 1 3.7996 -1.2884 0.3432 37 1 3.7559 -0.9590 3.2717 38 1 3.6095 -2.5201 2.4292 39 1 5.7757 -2.5718 4.0325 40 1 8.2106 -3.8271 5.9393 41 1 2.2489 -1.6317 -1.1527 42 1 2.8659 -2.6031 -2.5771 43 1 3.6787 -3.7665 -4.5811 44 1 3.9289 -2.5713 -6.7053 45 1 2.1634 2.1064 -4.5287 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001569073520.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:42:36 Heat of formation + Delta-G solvation = -7.234154 kcal Electronic energy + Delta-G solvation = -29028.648223 eV Core-core repulsion = 24853.258882 eV Total energy + Delta-G solvation = -4175.389341 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -42.57885 -40.83750 -40.08846 -38.08167 -37.71178 -36.01058 -35.07489 -33.69639 -33.23451 -32.28518 -30.95613 -30.21734 -28.94117 -26.69433 -25.41609 -24.54818 -23.53657 -22.97664 -22.16690 -21.51508 -21.05605 -19.91154 -19.39939 -18.10508 -17.85020 -17.45965 -17.02501 -16.88551 -16.35124 -16.26436 -15.99370 -15.95020 -15.70018 -15.62804 -15.28746 -15.09378 -15.00308 -14.45937 -14.30039 -13.99973 -13.55121 -13.34680 -13.07036 -13.00267 -12.94714 -12.82860 -12.76929 -12.74699 -12.58140 -12.38485 -12.11078 -12.04922 -11.89672 -11.49699 -11.39232 -10.92620 -10.34331 -10.11894 -9.99148 -9.74148 -9.28176 -9.10786 -8.45367 -5.93488 -0.56514 0.35362 1.37365 1.38901 1.43068 1.56750 1.71544 1.86924 2.08074 2.12030 2.30336 2.83715 2.92350 3.22489 3.48592 3.56311 3.63628 3.81514 3.88132 3.98443 4.01099 4.23685 4.30079 4.31305 4.41211 4.53755 4.56581 4.63634 4.72310 4.72739 4.79594 4.83197 4.84853 5.11267 5.19494 5.30064 5.32368 5.37278 5.43009 5.52726 5.71060 5.89916 6.11984 6.27802 6.41669 6.49117 6.52682 6.62561 7.15172 7.20275 7.59180 8.14957 8.72155 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.011444 B = 0.002344 C = 0.002067 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2446.092293 B =11942.121387 C =13541.969120 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.146 3.854 3 H 0.068 0.932 4 C 0.056 3.944 5 N -0.688 5.688 6 C 0.065 3.935 7 C 0.436 3.564 8 O -0.624 6.624 9 N -0.573 5.573 10 C -0.331 4.331 11 H 0.076 0.924 12 C -0.012 4.012 13 N -0.919 5.919 14 Si 0.990 3.010 15 H -0.275 1.275 16 H -0.273 1.273 17 H -0.269 1.269 18 N -0.706 5.706 19 C 0.558 3.442 20 O -0.569 6.569 21 C -0.083 4.083 22 C -0.108 4.108 23 C -0.074 4.074 24 C -0.108 4.108 25 C 0.108 3.892 26 N -0.498 5.498 27 H 0.455 0.545 28 N -0.271 5.271 29 C 0.073 3.927 30 C -0.159 4.159 31 H 0.046 0.954 32 H 0.075 0.925 33 H 0.082 0.918 34 H 0.100 0.900 35 H 0.062 0.938 36 H 0.343 0.657 37 H 0.105 0.895 38 H 0.076 0.924 39 H 0.397 0.603 40 H 0.277 0.723 41 H 0.408 0.592 42 H 0.154 0.846 43 H 0.175 0.825 44 H 0.166 0.834 45 H 0.195 0.805 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.309 -3.367 -16.810 23.662 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.042 3.958 3 H 0.087 0.913 4 C -0.073 4.073 5 N -0.322 5.322 6 C -0.067 4.067 7 C 0.224 3.776 8 O -0.511 6.511 9 N -0.211 5.211 10 C -0.461 4.461 11 H 0.094 0.906 12 C -0.212 4.212 13 N -0.561 5.561 14 Si 0.814 3.186 15 H -0.200 1.200 16 H -0.198 1.198 17 H -0.194 1.194 18 N -0.358 5.358 19 C 0.346 3.654 20 O -0.450 6.450 21 C -0.089 4.089 22 C -0.128 4.128 23 C -0.094 4.094 24 C -0.130 4.130 25 C -0.009 4.009 26 N -0.216 5.216 27 H 0.303 0.697 28 N -0.087 5.087 29 C -0.122 4.122 30 C -0.168 4.168 31 H 0.065 0.935 32 H 0.094 0.906 33 H 0.101 0.899 34 H 0.118 0.882 35 H 0.081 0.919 36 H 0.162 0.838 37 H 0.123 0.877 38 H 0.093 0.907 39 H 0.231 0.769 40 H 0.087 0.913 41 H 0.246 0.754 42 H 0.172 0.828 43 H 0.193 0.807 44 H 0.183 0.817 45 H 0.211 0.789 Dipole moment (debyes) X Y Z Total from point charges -15.920 -0.849 -18.045 24.079 hybrid contribution 0.826 -1.691 0.547 1.960 sum -15.094 -2.539 -17.498 23.248 Atomic orbital electron populations 1.22061 0.92983 1.03268 1.02733 1.21036 0.94830 0.97028 0.82936 0.91348 1.22375 0.86121 1.00727 0.98052 1.59977 1.10321 1.57697 1.04193 1.21554 0.90059 0.99267 0.95803 1.20974 0.90815 0.82059 0.83778 1.90512 1.72898 1.52629 1.35055 1.41933 1.06797 1.51682 1.20662 1.19661 0.83163 1.36657 1.06593 0.90550 1.25989 1.04694 0.95943 0.94571 1.69666 1.38114 1.38607 1.09668 0.84913 0.77180 0.78335 0.78178 1.19957 1.19817 1.19418 1.45853 1.66515 1.14346 1.09078 1.18349 0.77126 0.86191 0.83752 1.90705 1.51753 1.16904 1.85596 1.19488 1.03038 0.94830 0.91510 1.21543 0.98361 0.92063 1.00835 1.21407 0.95720 1.01813 0.90489 1.20717 1.02121 0.89315 1.00855 1.19141 1.00092 0.93295 0.88418 1.46091 1.58917 1.04766 1.11803 0.69682 1.76707 1.15871 1.04157 1.11972 1.24172 0.98801 0.97074 0.92134 1.18918 1.08846 0.94502 0.94499 0.93512 0.90644 0.89871 0.88213 0.91946 0.83750 0.87682 0.90672 0.76884 0.91327 0.75435 0.82812 0.80733 0.81691 0.78863 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.41 9.48 71.98 0.68 -1.72 16 2 C 0.15 3.01 2.88 44.99 0.13 3.14 16 3 H 0.07 1.87 7.58 -2.39 -0.02 1.85 16 4 C 0.06 1.07 5.30 86.30 0.46 1.53 16 5 N -0.69 -19.83 6.12 -517.92 -3.17 -23.00 16 6 C 0.07 2.04 6.17 85.56 0.53 2.57 16 7 C 0.44 20.05 7.82 87.66 0.69 20.73 16 8 O -0.62 -34.16 15.78 -3.08 -0.05 -34.21 16 9 N -0.57 -28.60 5.29 -306.99 -1.62 -30.22 16 10 C -0.33 -18.55 9.68 84.04 0.81 -17.74 16 11 H 0.08 4.61 7.16 -2.91 -0.02 4.59 16 12 C -0.01 -0.64 5.50 84.93 0.47 -0.18 16 13 N -0.92 -48.71 13.05 21.66 0.28 -48.43 16 14 Si 0.99 42.49 29.55 68.60 2.03 44.52 16 15 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 16 H -0.27 -11.29 7.11 99.48 0.71 -10.59 16 17 H -0.27 -10.96 7.11 99.48 0.71 -10.25 16 18 N -0.71 -14.48 4.31 -445.74 -1.92 -16.40 16 19 C 0.56 14.69 7.73 86.68 0.67 15.36 16 20 O -0.57 -18.72 14.60 -4.02 -0.06 -18.78 16 21 C -0.08 -1.93 5.90 -19.90 -0.12 -2.05 16 22 C -0.11 -1.74 9.52 22.52 0.21 -1.52 16 23 C -0.07 -0.89 10.00 22.24 0.22 -0.67 16 24 C -0.11 -1.43 10.06 22.41 0.23 -1.21 16 25 C 0.11 2.17 7.32 39.13 0.29 2.46 16 26 N -0.50 -9.58 7.45 -51.56 -0.38 -9.97 16 27 H 0.46 5.31 8.96 -213.37 -1.91 3.39 16 28 N -0.27 -6.93 12.58 -56.45 -0.71 -7.64 16 29 C 0.07 1.98 11.23 85.65 0.96 2.94 16 30 C -0.16 -4.05 6.00 -21.20 -0.13 -4.18 16 31 H 0.05 0.92 8.14 -2.39 -0.02 0.90 16 32 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 33 H 0.08 1.08 8.14 -2.39 -0.02 1.06 16 34 H 0.10 1.72 8.14 -2.39 -0.02 1.70 16 35 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 36 H 0.34 10.25 7.28 -89.70 -0.65 9.60 16 37 H 0.11 2.96 8.14 -2.39 -0.02 2.94 16 38 H 0.08 1.91 8.14 -2.39 -0.02 1.89 16 39 H 0.40 18.64 7.90 -92.70 -0.73 17.91 16 40 H 0.28 13.72 8.31 -92.71 -0.77 12.95 16 41 H 0.41 6.25 6.18 -92.71 -0.57 5.67 16 42 H 0.15 1.66 6.38 -2.91 -0.02 1.64 16 43 H 0.18 0.87 8.06 -2.91 -0.02 0.85 16 44 H 0.17 1.00 8.06 -2.91 -0.02 0.98 16 45 H 0.19 5.35 6.95 -2.91 -0.02 5.33 16 Total: -1.00 -79.49 384.43 -2.28 -81.78 By element: Atomic # 1 Polarization: 45.67 SS G_CDS: -2.78 Total: 42.89 kcal Atomic # 6 Polarization: 13.36 SS G_CDS: 6.10 Total: 19.46 kcal Atomic # 7 Polarization: -128.14 SS G_CDS: -7.52 Total: -135.66 kcal Atomic # 8 Polarization: -52.88 SS G_CDS: -0.11 Total: -52.99 kcal Atomic # 14 Polarization: 42.49 SS G_CDS: 2.03 Total: 44.52 kcal Total: -79.49 -2.28 -81.78 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001569073520.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.542 kcal (2) G-P(sol) polarization free energy of solvation -79.493 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.951 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.283 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.776 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.234 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds