Wall clock time and date at job start Wed Apr 1 2020 03:55:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.09005 * 109.46549 * 2 1 4 4 N 1.46495 * 109.47190 * 119.99935 * 2 1 3 5 5 C 1.36938 * 119.99838 * 275.00430 * 4 2 1 6 6 H 1.08002 * 120.00332 * 359.97438 * 5 4 2 7 7 C 1.38816 * 119.99681 * 179.97438 * 5 4 2 8 8 N 1.31615 * 120.00114 * 0.02562 * 7 5 4 9 9 Si 1.86806 * 119.99824 * 179.97438 * 7 5 4 10 10 H 1.48495 * 109.47203 * 59.99922 * 9 7 5 11 11 H 1.48498 * 109.47043 * 180.02562 * 9 7 5 12 12 H 1.48507 * 109.46916 * 300.00298 * 9 7 5 13 13 C 1.52992 * 109.47096 * 240.00150 * 2 1 3 14 14 H 1.09000 * 110.88902 * 299.72320 * 13 2 1 15 15 C 1.55159 * 111.00284 * 175.79955 * 13 2 1 16 16 C 1.54328 * 102.94064 * 206.42210 * 15 13 2 17 17 N 1.47016 * 107.27121 * 22.19214 * 16 15 13 18 18 C 1.34782 * 125.64552 * 181.09481 * 17 16 15 19 19 O 1.21644 * 119.99755 * 184.81572 * 18 17 16 20 20 C 1.47199 * 119.99959 * 4.80909 * 18 17 16 21 21 C 1.38839 * 120.90624 * 314.56151 * 20 18 17 22 22 C 1.39937 * 119.42882 * 179.73198 * 21 20 18 23 23 C 1.35017 * 121.27287 * 0.55567 * 22 21 20 24 24 N 1.36260 * 121.57925 * 359.72562 * 23 22 21 25 25 C 1.36364 * 133.87921 * 179.97438 * 24 23 22 26 26 O 1.35710 * 126.33511 * 0.04307 * 25 24 23 27 27 N 1.31100 * 107.33147 * 180.02562 * 25 24 23 28 28 N 1.28694 * 110.31206 * 0.02562 * 27 25 24 29 29 C 1.31481 * 109.67109 * 359.97438 * 28 27 25 30 30 C 1.47416 * 108.70654 * 1.06169 * 17 16 15 31 31 H 1.08998 * 109.46730 * 54.87401 * 1 2 3 32 32 H 1.08995 * 109.47125 * 294.86935 * 1 2 3 33 33 H 1.08999 * 109.46938 * 174.87257 * 1 2 3 34 34 H 0.96997 * 120.00314 * 94.99860 * 4 2 1 35 35 H 0.97006 * 119.99866 * 179.97438 * 8 7 5 36 36 H 1.08998 * 110.72101 * 324.78585 * 15 13 2 37 37 H 1.09001 * 110.72244 * 88.06135 * 15 13 2 38 38 H 1.08996 * 109.88136 * 262.77198 * 16 15 13 39 39 H 1.08999 * 110.00675 * 141.68317 * 16 15 13 40 40 H 1.07994 * 120.28374 * 359.97438 * 21 20 18 41 41 H 1.08009 * 119.36327 * 180.30474 * 22 21 20 42 42 H 1.07999 * 119.21183 * 179.70235 * 23 22 21 43 43 H 0.96701 * 114.00119 * 89.99930 * 26 25 24 44 44 H 1.09001 * 110.37128 * 217.03337 * 30 17 16 45 45 H 1.08996 * 110.46563 * 94.75467 * 30 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0184 -0.6906 1.1961 5 6 2.1491 -0.0074 2.3757 6 1 1.8926 1.0406 2.4241 7 6 2.6113 -0.6619 3.5093 8 7 2.9244 -1.9389 3.4501 9 14 2.7903 0.2701 5.1182 10 1 1.4684 0.8079 5.5285 11 1 3.2992 -0.6483 6.1683 12 1 3.7463 1.3920 4.9367 13 6 2.0400 -0.7212 -1.2492 14 1 1.6936 -1.7544 -1.2701 15 6 3.5874 -0.6507 -1.3393 16 6 3.8511 -0.7687 -2.8553 17 7 2.6198 -0.3579 -3.5457 18 6 2.4363 -0.3410 -4.8809 19 8 1.4036 0.1014 -5.3473 20 6 3.4855 -0.8579 -5.7746 21 6 4.8176 -0.5168 -5.5826 22 6 5.7904 -1.0305 -6.4475 23 6 5.4578 -1.8433 -7.4729 24 7 4.1647 -2.2033 -7.7077 25 6 3.5568 -2.9877 -8.6429 26 8 4.1691 -3.6549 -9.6537 27 7 2.2715 -2.9783 -8.3848 28 7 2.0278 -2.2448 -7.3559 29 6 3.1516 -1.7412 -6.8952 30 6 1.6190 0.0317 -2.5359 31 1 -0.3633 0.5913 -0.8405 32 1 -0.3633 0.4322 0.9323 33 1 -0.3633 -1.0235 -0.0918 34 1 2.2491 -1.6317 1.1526 35 1 3.2478 -2.3962 4.2422 36 1 3.9529 0.3025 -0.9573 37 1 4.0433 -1.4828 -0.8027 38 1 4.0925 -1.8005 -3.1103 39 1 4.6736 -0.1138 -3.1429 40 1 5.1009 0.1361 -4.7704 41 1 6.8269 -0.7684 -6.2942 42 1 6.2351 -2.2169 -8.1230 43 1 4.4466 -4.5517 -9.4218 44 1 0.6227 -0.2802 -2.8491 45 1 1.6439 1.1088 -2.3705 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001569827064.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:55:11 Heat of formation + Delta-G solvation = 68.704078 kcal Electronic energy + Delta-G solvation = -29730.022075 eV Core-core repulsion = 25557.925663 eV Total energy + Delta-G solvation = -4172.096413 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 5.45 seconds Orbital eigenvalues (eV) -43.93865 -40.30531 -38.58118 -38.14976 -37.75066 -35.29413 -34.18085 -32.45553 -31.62619 -30.57645 -29.65462 -29.09042 -27.47050 -25.79137 -24.37877 -23.93017 -23.45489 -22.70050 -21.49961 -20.54202 -19.68012 -19.13777 -18.68386 -17.82001 -17.47313 -17.12520 -16.77755 -16.08675 -16.00943 -15.65853 -15.20982 -14.78057 -14.25372 -13.95017 -13.70273 -13.49886 -13.28717 -13.22536 -13.05519 -12.89603 -12.73128 -12.44160 -12.40098 -12.14006 -12.10206 -11.75330 -11.49425 -11.24323 -10.90137 -10.86221 -10.74327 -10.62226 -10.41306 -10.26461 -10.16720 -10.04862 -9.89000 -9.66320 -8.93949 -8.74617 -8.56532 -6.99625 -5.79928 -3.08331 -0.23189 0.49887 1.32491 2.07029 2.30792 2.65156 3.00864 3.14002 3.41220 3.46596 3.46808 3.51562 3.75578 4.06975 4.11607 4.31151 4.53514 4.69663 4.75134 4.82986 4.97437 5.03853 5.13538 5.25868 5.28867 5.32879 5.43126 5.50691 5.59400 5.62843 5.85678 5.87480 5.93611 5.99525 6.02129 6.15912 6.18101 6.32931 6.42418 6.54813 6.63181 6.71449 6.85521 7.09070 7.35532 7.67054 7.96211 8.05062 8.38668 9.50138 10.07157 10.42098 11.42586 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.022118 B = 0.002170 C = 0.002094 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1265.649774 B =12898.730322 C =13366.276221 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.186 3.814 3 H 0.050 0.950 4 N -0.722 5.722 5 C -0.236 4.236 6 H 0.069 0.931 7 C -0.013 4.013 8 N -0.933 5.933 9 Si 0.905 3.095 10 H -0.286 1.286 11 H -0.292 1.292 12 H -0.286 1.286 13 C -0.103 4.103 14 H 0.082 0.918 15 C -0.115 4.115 16 C 0.092 3.908 17 N -0.608 5.608 18 C 0.580 3.420 19 O -0.510 6.510 20 C -0.073 4.073 21 C -0.051 4.051 22 C -0.138 4.138 23 C 0.084 3.916 24 N -0.405 5.405 25 C 0.315 3.685 26 O -0.427 6.427 27 N -0.236 5.236 28 N -0.249 5.249 29 C 0.233 3.767 30 C 0.116 3.884 31 H 0.038 0.962 32 H 0.056 0.944 33 H 0.046 0.954 34 H 0.383 0.617 35 H 0.255 0.745 36 H 0.081 0.919 37 H 0.088 0.912 38 H 0.067 0.933 39 H 0.068 0.932 40 H 0.161 0.839 41 H 0.165 0.835 42 H 0.173 0.827 43 H 0.406 0.594 44 H 0.080 0.920 45 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.280 -0.823 -22.541 25.219 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.075 3.925 3 H 0.068 0.932 4 N -0.363 5.363 5 C -0.367 4.367 6 H 0.087 0.913 7 C -0.209 4.209 8 N -0.582 5.582 9 Si 0.736 3.264 10 H -0.213 1.213 11 H -0.218 1.218 12 H -0.213 1.213 13 C -0.123 4.123 14 H 0.100 0.900 15 C -0.153 4.153 16 C -0.031 4.031 17 N -0.342 5.342 18 C 0.366 3.634 19 O -0.386 6.386 20 C -0.080 4.080 21 C -0.075 4.075 22 C -0.160 4.160 23 C -0.038 4.038 24 N -0.098 5.098 25 C 0.016 3.984 26 O -0.226 6.226 27 N -0.086 5.086 28 N -0.095 5.095 29 C -0.019 4.019 30 C -0.006 4.006 31 H 0.057 0.943 32 H 0.075 0.925 33 H 0.065 0.935 34 H 0.217 0.783 35 H 0.065 0.935 36 H 0.100 0.900 37 H 0.107 0.893 38 H 0.086 0.914 39 H 0.086 0.914 40 H 0.179 0.821 41 H 0.183 0.817 42 H 0.191 0.809 43 H 0.263 0.737 44 H 0.099 0.901 45 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 9.102 -0.471 -23.440 25.150 hybrid contribution 1.896 -0.205 1.104 2.204 sum 10.999 -0.676 -22.336 24.906 Atomic orbital electron populations 1.22503 0.99177 1.00730 1.00515 1.20127 0.91853 0.95127 0.85346 0.93209 1.42358 1.78176 1.10655 1.05114 1.19169 1.36459 0.93816 0.87300 0.91266 1.24714 1.02269 0.95939 0.97965 1.69644 1.50943 1.08635 1.28963 0.86303 0.77787 0.78589 0.83707 1.21318 1.21780 1.21327 1.22694 0.95082 1.00428 0.94049 0.89954 1.22588 0.96556 1.04319 0.91852 1.22398 0.86551 0.99779 0.94360 1.48403 1.16343 1.65222 1.04214 1.17036 0.86020 0.79605 0.80701 1.90891 1.27388 1.45433 1.74843 1.20028 0.94497 0.99198 0.94257 1.21994 0.90128 0.96839 0.98519 1.20836 1.01750 0.98622 0.94783 1.21752 0.83975 0.98554 0.99525 1.44059 1.08448 1.34867 1.22455 1.21778 0.87268 0.99336 0.90055 1.85022 1.76711 1.31977 1.28865 1.74704 1.08823 1.15280 1.09785 1.74952 1.18980 1.10334 1.05259 1.22555 0.84577 1.00727 0.94090 1.22374 0.92157 0.99609 0.86449 0.94292 0.92535 0.93533 0.78303 0.93509 0.89987 0.89297 0.91429 0.91404 0.82125 0.81719 0.80933 0.73717 0.90147 0.90828 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.92 9.23 37.16 0.34 -2.58 16 2 C 0.19 3.33 2.40 -67.93 -0.16 3.17 16 3 H 0.05 0.91 8.08 -51.93 -0.42 0.49 16 4 N -0.72 -16.57 4.89 -53.43 -0.26 -16.84 16 5 C -0.24 -6.17 9.93 -15.06 -0.15 -6.32 16 6 H 0.07 1.77 7.83 -52.49 -0.41 1.36 16 7 C -0.01 -0.35 5.50 -17.43 -0.10 -0.45 16 8 N -0.93 -26.98 13.06 55.49 0.72 -26.25 16 9 Si 0.90 21.62 29.55 -169.99 -5.02 16.60 16 10 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 11 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 12 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 13 C -0.10 -1.50 2.64 -88.47 -0.23 -1.73 16 14 H 0.08 1.27 8.14 -51.93 -0.42 0.85 16 15 C -0.12 -1.48 6.20 -24.89 -0.15 -1.63 16 16 C 0.09 0.92 5.60 -3.07 -0.02 0.90 16 17 N -0.61 -7.73 3.33 -171.87 -0.57 -8.30 16 18 C 0.58 8.32 7.47 -12.62 -0.09 8.23 16 19 O -0.51 -9.38 17.33 5.24 0.09 -9.29 16 20 C -0.07 -0.84 5.62 -102.69 -0.58 -1.41 16 21 C -0.05 -0.35 8.64 -38.72 -0.33 -0.68 16 22 C -0.14 -0.58 9.91 -40.09 -0.40 -0.97 16 23 C 0.08 0.44 10.94 -16.73 -0.18 0.26 16 24 N -0.41 -3.95 2.97 -62.51 -0.19 -4.13 16 25 C 0.32 3.37 9.41 -88.66 -0.83 2.53 16 26 O -0.43 -2.91 13.65 -18.84 -0.26 -3.16 16 27 N -0.24 -3.44 12.20 29.70 0.36 -3.08 16 28 N -0.25 -4.05 12.26 32.37 0.40 -3.65 16 29 C 0.23 3.07 7.88 -153.91 -1.21 1.86 16 30 C 0.12 1.58 5.49 -2.53 -0.01 1.57 16 31 H 0.04 0.57 7.59 -51.93 -0.39 0.18 16 32 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 33 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 34 H 0.38 9.42 7.80 -40.82 -0.32 9.10 16 35 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 36 H 0.08 1.09 8.04 -51.93 -0.42 0.67 16 37 H 0.09 1.23 8.14 -51.93 -0.42 0.80 16 38 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 39 H 0.07 0.49 5.93 -51.93 -0.31 0.18 16 40 H 0.16 0.76 5.78 -52.49 -0.30 0.46 16 41 H 0.17 0.06 8.06 -52.48 -0.42 -0.36 16 42 H 0.17 0.26 8.06 -52.49 -0.42 -0.16 16 43 H 0.41 0.49 9.06 45.56 0.41 0.91 16 44 H 0.08 1.17 8.09 -51.93 -0.42 0.75 16 45 H 0.07 0.97 8.03 -51.93 -0.42 0.55 16 LS Contribution 378.76 15.07 5.71 5.71 Total: -1.00 -36.93 378.76 -8.22 -45.15 By element: Atomic # 1 Polarization: 9.58 SS G_CDS: -5.09 Total: 4.49 kcal Atomic # 6 Polarization: 6.86 SS G_CDS: -4.12 Total: 2.75 kcal Atomic # 7 Polarization: -62.72 SS G_CDS: 0.47 Total: -62.25 kcal Atomic # 8 Polarization: -12.28 SS G_CDS: -0.17 Total: -12.45 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -5.02 Total: 16.60 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -36.93 -8.22 -45.15 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001569827064.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.858 kcal (2) G-P(sol) polarization free energy of solvation -36.930 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.929 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.225 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.154 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.704 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 5.45 seconds