Wall clock time and date at job start Wed Apr 1 2020 03:55:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.09005 * 109.46549 * 2 1 4 4 N 1.46495 * 109.47190 * 119.99935 * 2 1 3 5 5 C 1.36938 * 119.99838 * 275.00430 * 4 2 1 6 6 H 1.08002 * 120.00332 * 359.97438 * 5 4 2 7 7 C 1.38816 * 119.99681 * 179.97438 * 5 4 2 8 8 N 1.31615 * 120.00114 * 0.02562 * 7 5 4 9 9 Si 1.86806 * 119.99824 * 179.97438 * 7 5 4 10 10 H 1.48495 * 109.47203 * 59.99922 * 9 7 5 11 11 H 1.48498 * 109.47043 * 180.02562 * 9 7 5 12 12 H 1.48507 * 109.46916 * 300.00298 * 9 7 5 13 13 C 1.52992 * 109.47096 * 240.00150 * 2 1 3 14 14 H 1.09000 * 110.88902 * 299.72320 * 13 2 1 15 15 C 1.55159 * 111.00284 * 175.79955 * 13 2 1 16 16 C 1.54328 * 102.94064 * 206.42210 * 15 13 2 17 17 N 1.47016 * 107.27121 * 22.19214 * 16 15 13 18 18 C 1.34782 * 125.64552 * 181.09481 * 17 16 15 19 19 O 1.21644 * 119.99755 * 184.81572 * 18 17 16 20 20 C 1.47199 * 119.99959 * 4.80909 * 18 17 16 21 21 C 1.38839 * 120.90624 * 314.56151 * 20 18 17 22 22 C 1.39937 * 119.42882 * 179.73198 * 21 20 18 23 23 C 1.35017 * 121.27287 * 0.55567 * 22 21 20 24 24 N 1.36260 * 121.57925 * 359.72562 * 23 22 21 25 25 C 1.36364 * 133.87921 * 179.97438 * 24 23 22 26 26 O 1.35710 * 126.33511 * 0.04307 * 25 24 23 27 27 N 1.31100 * 107.33147 * 180.02562 * 25 24 23 28 28 N 1.28694 * 110.31206 * 0.02562 * 27 25 24 29 29 C 1.31481 * 109.67109 * 359.97438 * 28 27 25 30 30 C 1.47416 * 108.70654 * 1.06169 * 17 16 15 31 31 H 1.08998 * 109.46730 * 54.87401 * 1 2 3 32 32 H 1.08995 * 109.47125 * 294.86935 * 1 2 3 33 33 H 1.08999 * 109.46938 * 174.87257 * 1 2 3 34 34 H 0.96997 * 120.00314 * 94.99860 * 4 2 1 35 35 H 0.97006 * 119.99866 * 179.97438 * 8 7 5 36 36 H 1.08998 * 110.72101 * 324.78585 * 15 13 2 37 37 H 1.09001 * 110.72244 * 88.06135 * 15 13 2 38 38 H 1.08996 * 109.88136 * 262.77198 * 16 15 13 39 39 H 1.08999 * 110.00675 * 141.68317 * 16 15 13 40 40 H 1.07994 * 120.28374 * 359.97438 * 21 20 18 41 41 H 1.08009 * 119.36327 * 180.30474 * 22 21 20 42 42 H 1.07999 * 119.21183 * 179.70235 * 23 22 21 43 43 H 0.96701 * 114.00119 * 89.99930 * 26 25 24 44 44 H 1.09001 * 110.37128 * 217.03337 * 30 17 16 45 45 H 1.08996 * 110.46563 * 94.75467 * 30 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0184 -0.6906 1.1961 5 6 2.1491 -0.0074 2.3757 6 1 1.8926 1.0406 2.4241 7 6 2.6113 -0.6619 3.5093 8 7 2.9244 -1.9389 3.4501 9 14 2.7903 0.2701 5.1182 10 1 1.4684 0.8079 5.5285 11 1 3.2992 -0.6483 6.1683 12 1 3.7463 1.3920 4.9367 13 6 2.0400 -0.7212 -1.2492 14 1 1.6936 -1.7544 -1.2701 15 6 3.5874 -0.6507 -1.3393 16 6 3.8511 -0.7687 -2.8553 17 7 2.6198 -0.3579 -3.5457 18 6 2.4363 -0.3410 -4.8809 19 8 1.4036 0.1014 -5.3473 20 6 3.4855 -0.8579 -5.7746 21 6 4.8176 -0.5168 -5.5826 22 6 5.7904 -1.0305 -6.4475 23 6 5.4578 -1.8433 -7.4729 24 7 4.1647 -2.2033 -7.7077 25 6 3.5568 -2.9877 -8.6429 26 8 4.1691 -3.6549 -9.6537 27 7 2.2715 -2.9783 -8.3848 28 7 2.0278 -2.2448 -7.3559 29 6 3.1516 -1.7412 -6.8952 30 6 1.6190 0.0317 -2.5359 31 1 -0.3633 0.5913 -0.8405 32 1 -0.3633 0.4322 0.9323 33 1 -0.3633 -1.0235 -0.0918 34 1 2.2491 -1.6317 1.1526 35 1 3.2478 -2.3962 4.2422 36 1 3.9529 0.3025 -0.9573 37 1 4.0433 -1.4828 -0.8027 38 1 4.0925 -1.8005 -3.1103 39 1 4.6736 -0.1138 -3.1429 40 1 5.1009 0.1361 -4.7704 41 1 6.8269 -0.7684 -6.2942 42 1 6.2351 -2.2169 -8.1230 43 1 4.4466 -4.5517 -9.4218 44 1 0.6227 -0.2802 -2.8491 45 1 1.6439 1.1088 -2.3705 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001569827064.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:55:09 Heat of formation + Delta-G solvation = 39.348394 kcal Electronic energy + Delta-G solvation = -29731.295033 eV Core-core repulsion = 25557.925663 eV Total energy + Delta-G solvation = -4173.369370 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -44.69139 -41.31741 -39.34902 -38.84912 -38.74950 -36.79071 -34.98535 -34.11242 -32.38014 -31.78818 -30.82659 -30.21059 -28.74188 -26.69979 -25.86952 -24.68692 -24.52769 -23.59963 -22.77055 -21.32602 -21.03841 -19.92627 -19.41810 -19.06027 -18.48273 -18.25899 -17.68352 -17.13424 -16.73488 -16.50042 -16.37048 -15.82893 -15.64511 -15.27061 -14.88424 -14.66334 -14.36067 -14.09628 -13.96184 -13.85261 -13.75876 -13.59897 -13.47518 -13.17772 -13.13981 -12.92602 -12.81980 -12.72767 -12.30205 -12.21715 -12.17079 -11.94430 -11.64999 -11.58760 -11.51951 -11.35175 -11.16581 -10.87316 -10.76671 -9.75472 -9.26484 -8.94115 -7.87489 -5.14206 -0.81726 -0.12618 0.63394 1.35921 1.43517 1.51756 1.53477 1.59073 1.78161 2.21975 2.51094 2.61200 2.93078 3.07849 3.36306 3.46395 3.63652 3.67501 3.67877 3.73914 3.89039 4.22321 4.25691 4.32610 4.38708 4.41971 4.54235 4.62020 4.65470 4.67028 4.73897 4.79633 4.86526 4.91763 5.00570 5.08590 5.12081 5.18282 5.26096 5.37019 5.41601 5.55042 5.58748 5.63478 6.28205 6.34184 6.37789 6.95579 7.23837 7.41811 8.17816 8.41530 9.35615 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.022118 B = 0.002170 C = 0.002094 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1265.649774 B =12898.730322 C =13366.276221 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.184 3.816 3 H 0.053 0.947 4 N -0.730 5.730 5 C -0.230 4.230 6 H 0.074 0.926 7 C -0.074 4.074 8 N -0.968 5.968 9 Si 0.964 3.036 10 H -0.285 1.285 11 H -0.300 1.300 12 H -0.276 1.276 13 C -0.095 4.095 14 H 0.070 0.930 15 C -0.111 4.111 16 C 0.097 3.903 17 N -0.606 5.606 18 C 0.580 3.420 19 O -0.568 6.568 20 C -0.129 4.129 21 C -0.006 4.006 22 C -0.131 4.131 23 C 0.090 3.910 24 N -0.404 5.404 25 C 0.331 3.669 26 O -0.421 6.421 27 N -0.287 5.287 28 N -0.320 5.320 29 C 0.225 3.775 30 C 0.121 3.879 31 H 0.064 0.936 32 H 0.036 0.964 33 H 0.039 0.961 34 H 0.373 0.627 35 H 0.249 0.751 36 H 0.081 0.919 37 H 0.078 0.922 38 H 0.080 0.920 39 H 0.110 0.890 40 H 0.189 0.811 41 H 0.220 0.780 42 H 0.220 0.780 43 H 0.431 0.569 44 H 0.064 0.936 45 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.424 0.188 -23.704 28.281 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.075 3.925 3 H 0.071 0.929 4 N -0.369 5.369 5 C -0.362 4.362 6 H 0.092 0.908 7 C -0.266 4.266 8 N -0.619 5.619 9 Si 0.795 3.205 10 H -0.211 1.211 11 H -0.226 1.226 12 H -0.202 1.202 13 C -0.115 4.115 14 H 0.089 0.911 15 C -0.149 4.149 16 C -0.024 4.024 17 N -0.339 5.339 18 C 0.369 3.631 19 O -0.448 6.448 20 C -0.136 4.136 21 C -0.030 4.030 22 C -0.151 4.151 23 C -0.031 4.031 24 N -0.097 5.097 25 C 0.029 3.971 26 O -0.224 6.224 27 N -0.135 5.135 28 N -0.165 5.165 29 C -0.029 4.029 30 C -0.002 4.002 31 H 0.083 0.917 32 H 0.055 0.945 33 H 0.058 0.942 34 H 0.205 0.795 35 H 0.057 0.943 36 H 0.099 0.901 37 H 0.097 0.903 38 H 0.098 0.902 39 H 0.127 0.873 40 H 0.206 0.794 41 H 0.237 0.763 42 H 0.236 0.764 43 H 0.293 0.707 44 H 0.082 0.918 45 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 13.259 0.539 -24.623 27.971 hybrid contribution 0.761 -0.509 1.361 1.640 sum 14.020 0.030 -23.262 27.160 Atomic orbital electron populations 1.22398 0.98641 1.00652 1.00559 1.20285 0.92039 0.95145 0.84999 0.92888 1.42503 1.78261 1.10270 1.05908 1.19520 1.34333 0.94060 0.88269 0.90805 1.25418 1.03414 0.96767 1.00992 1.69791 1.52876 1.10038 1.29235 0.85344 0.77727 0.77445 0.80033 1.21121 1.22617 1.20240 1.22461 0.96840 0.99327 0.92895 0.91130 1.22514 0.94541 1.03809 0.94012 1.22527 0.86415 1.01644 0.91823 1.48412 1.16861 1.64753 1.03865 1.17504 0.86059 0.78529 0.81037 1.90843 1.30072 1.48021 1.75834 1.19766 0.95538 1.03026 0.95259 1.22516 0.88380 0.93936 0.98181 1.21486 1.03419 0.97119 0.93113 1.22823 0.82767 0.97406 1.00077 1.44184 1.09445 1.34504 1.21577 1.21706 0.86828 0.98748 0.89856 1.85000 1.76153 1.33631 1.27574 1.74499 1.11496 1.16869 1.10672 1.74788 1.21587 1.12995 1.07126 1.22747 0.84805 1.00600 0.94738 1.22199 0.91990 0.99773 0.86199 0.91681 0.94458 0.94201 0.79511 0.94260 0.90068 0.90335 0.90167 0.87253 0.79420 0.76319 0.76381 0.70705 0.91753 0.90068 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.66 9.23 71.98 0.66 -4.99 16 2 C 0.18 6.58 2.40 44.99 0.11 6.69 16 3 H 0.05 1.88 8.08 -2.38 -0.02 1.86 16 4 N -0.73 -33.77 4.89 -322.94 -1.58 -35.35 16 5 C -0.23 -11.98 9.93 84.03 0.83 -11.15 16 6 H 0.07 3.72 7.83 -2.91 -0.02 3.70 16 7 C -0.07 -4.04 5.50 84.86 0.47 -3.58 16 8 N -0.97 -56.83 13.06 21.65 0.28 -56.54 16 9 Si 0.96 44.56 29.55 68.60 2.03 46.59 16 10 H -0.28 -12.92 7.11 99.48 0.71 -12.21 16 11 H -0.30 -14.11 7.11 99.48 0.71 -13.41 16 12 H -0.28 -12.17 7.11 99.48 0.71 -11.46 16 13 C -0.10 -2.77 2.64 -9.40 -0.02 -2.80 16 14 H 0.07 2.23 8.14 -2.39 -0.02 2.21 16 15 C -0.11 -2.67 6.20 31.78 0.20 -2.47 16 16 C 0.10 1.68 5.60 86.73 0.49 2.16 16 17 N -0.61 -14.87 3.33 -815.92 -2.71 -17.58 16 18 C 0.58 16.79 7.47 86.60 0.65 17.43 16 19 O -0.57 -22.15 17.33 -4.17 -0.07 -22.23 16 20 C -0.13 -2.80 5.62 -18.61 -0.10 -2.90 16 21 C -0.01 -0.06 8.64 22.83 0.20 0.14 16 22 C -0.13 -0.25 9.91 21.94 0.22 -0.03 16 23 C 0.09 0.48 10.94 83.26 0.91 1.39 16 24 N -0.40 -7.03 2.97 -462.37 -1.37 -8.41 16 25 C 0.33 6.79 9.41 179.66 1.69 8.48 16 26 O -0.42 -4.78 13.65 -90.31 -1.23 -6.02 16 27 N -0.29 -8.83 12.20 -173.36 -2.12 -10.94 16 28 N -0.32 -11.13 12.26 -51.50 -0.63 -11.76 16 29 C 0.22 5.96 7.88 135.68 1.07 7.03 16 30 C 0.12 3.30 5.49 86.86 0.48 3.77 16 31 H 0.06 1.91 7.59 -2.39 -0.02 1.89 16 32 H 0.04 1.41 8.14 -2.39 -0.02 1.39 16 33 H 0.04 1.41 8.14 -2.39 -0.02 1.39 16 34 H 0.37 18.71 7.80 -92.71 -0.72 17.99 16 35 H 0.25 14.33 8.31 -92.70 -0.77 13.55 16 36 H 0.08 1.99 8.04 -2.39 -0.02 1.97 16 37 H 0.08 2.09 8.14 -2.39 -0.02 2.07 16 38 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 39 H 0.11 1.01 5.93 -2.39 -0.01 0.99 16 40 H 0.19 0.59 5.78 -2.91 -0.02 0.58 16 41 H 0.22 -1.82 8.06 -2.91 -0.02 -1.84 16 42 H 0.22 -0.88 8.06 -2.91 -0.02 -0.90 16 43 H 0.43 -0.13 9.06 -74.06 -0.67 -0.81 16 44 H 0.06 1.96 8.09 -2.39 -0.02 1.94 16 45 H 0.08 2.08 8.03 -2.39 -0.02 2.06 16 Total: -1.00 -88.97 378.76 0.09 -88.88 By element: Atomic # 1 Polarization: 14.53 SS G_CDS: -0.34 Total: 14.19 kcal Atomic # 6 Polarization: 11.34 SS G_CDS: 7.83 Total: 19.17 kcal Atomic # 7 Polarization: -132.46 SS G_CDS: -8.13 Total: -140.59 kcal Atomic # 8 Polarization: -26.94 SS G_CDS: -1.30 Total: -28.24 kcal Atomic # 14 Polarization: 44.56 SS G_CDS: 2.03 Total: 46.59 kcal Total: -88.97 0.09 -88.88 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001569827064.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.229 kcal (2) G-P(sol) polarization free energy of solvation -88.971 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.258 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.090 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.881 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.348 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds