Wall clock time and date at job start Wed Apr 1 2020 03:55:25
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52999 * 1
3 3 H 1.08998 * 109.47436 * 2 1
4 4 N 1.46500 * 109.46830 * 119.99456 * 2 1 3
5 5 C 1.36938 * 120.00222 * 274.99858 * 4 2 1
6 6 H 1.07997 * 119.99652 * 0.02562 * 5 4 2
7 7 C 1.38817 * 120.00102 * 180.02562 * 5 4 2
8 8 N 1.31621 * 119.99606 * 359.97438 * 7 5 4
9 9 Si 1.86797 * 120.00011 * 180.02562 * 7 5 4
10 10 H 1.48499 * 109.47141 * 89.99768 * 9 7 5
11 11 H 1.48493 * 109.46878 * 209.99557 * 9 7 5
12 12 H 1.48493 * 109.47084 * 330.00109 * 9 7 5
13 13 C 1.52998 * 109.47309 * 239.99669 * 2 1 3
14 14 H 1.08995 * 110.88573 * 302.42488 * 13 2 1
15 15 C 1.55151 * 111.00473 * 66.35037 * 13 2 1
16 16 C 1.54332 * 103.02161 * 153.38163 * 15 13 2
17 17 N 1.47020 * 107.26554 * 338.14023 * 16 15 13
18 18 C 1.34776 * 125.64909 * 178.84758 * 17 16 15
19 19 O 1.21643 * 119.99858 * 184.51548 * 18 17 16
20 20 C 1.47202 * 119.99970 * 4.51670 * 18 17 16
21 21 C 1.38841 * 120.90153 * 313.54286 * 20 18 17
22 22 C 1.39938 * 119.43282 * 179.75573 * 21 20 18
23 23 C 1.35013 * 121.26553 * 0.48725 * 22 21 20
24 24 N 1.36260 * 121.58376 * 359.48786 * 23 22 21
25 25 C 1.36367 * 133.87745 * 180.27588 * 24 23 22
26 26 O 1.35715 * 126.33638 * 359.97438 * 25 24 23
27 27 N 1.31109 * 107.32831 * 179.97438 * 25 24 23
28 28 N 1.28692 * 110.31289 * 0.02562 * 27 25 24
29 29 C 1.31483 * 109.67150 * 359.97438 * 28 27 25
30 30 C 1.47424 * 108.70468 * 358.58451 * 17 16 15
31 31 H 1.09009 * 109.46929 * 60.00287 * 1 2 3
32 32 H 1.08998 * 109.47436 * 180.02562 * 1 2 3
33 33 H 1.09001 * 109.47162 * 300.00250 * 1 2 3
34 34 H 0.97002 * 119.99855 * 95.00744 * 4 2 1
35 35 H 0.97005 * 119.99376 * 180.02562 * 8 7 5
36 36 H 1.08998 * 110.72061 * 271.93937 * 15 13 2
37 37 H 1.09000 * 110.72011 * 35.03737 * 15 13 2
38 38 H 1.08997 * 109.99582 * 218.66855 * 16 15 13
39 39 H 1.08997 * 109.78355 * 97.49681 * 16 15 13
40 40 H 1.08002 * 120.28743 * 359.97438 * 21 20 18
41 41 H 1.07998 * 119.36466 * 180.25519 * 22 21 20
42 42 H 1.08004 * 119.21044 * 179.76061 * 23 22 21
43 43 H 0.96704 * 113.99462 * 90.00303 * 26 25 24
44 44 H 1.08994 * 110.36844 * 143.18910 * 30 17 16
45 45 H 1.08992 * 110.36897 * 265.40970 * 30 17 16
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8934 1.0276 0.0000
4 7 2.0183 -0.6905 1.1963
5 6 2.1490 -0.0073 2.3758
6 1 1.8918 1.0405 2.4243
7 6 2.6122 -0.6615 3.5092
8 7 2.9252 -1.9386 3.4501
9 14 2.7899 0.2703 5.1183
10 1 1.5223 0.1782 5.8863
11 1 3.8948 -0.3223 5.9140
12 1 3.0938 1.6957 4.8340
13 6 2.0400 -0.7213 -1.2492
14 1 1.6548 -1.7399 -1.2942
15 6 1.6776 0.0686 -2.5344
16 6 2.7788 -0.3591 -3.5276
17 7 3.9165 -0.8466 -2.7342
18 6 5.0708 -1.3324 -3.2324
19 8 5.9143 -1.7851 -2.4819
20 6 5.3107 -1.3151 -4.6846
21 6 4.3336 -1.7420 -5.5738
22 6 4.5926 -1.7077 -6.9486
23 6 5.7789 -1.2761 -7.4276
24 7 6.7701 -0.8465 -6.5972
25 6 8.0302 -0.3658 -6.7991
26 8 8.6415 -0.1905 -7.9980
27 7 8.5419 -0.1043 -5.6206
28 7 7.6951 -0.3863 -4.6934
29 6 6.5870 -0.8464 -5.2310
30 6 3.5882 -0.7103 -1.3035
31 1 -0.3633 0.5138 -0.8901
32 1 -0.3634 -1.0276 0.0005
33 1 -0.3633 0.5139 0.8900
34 1 2.2490 -1.6317 1.1527
35 1 3.2485 -2.3958 4.2422
36 1 0.6922 -0.2204 -2.8997
37 1 1.7201 1.1424 -2.3520
38 1 3.0871 0.4938 -4.1322
39 1 2.4063 -1.1566 -4.1704
40 1 3.3805 -2.0943 -5.2079
41 1 3.8303 -2.0361 -7.6395
42 1 5.9446 -1.2672 -8.4948
43 1 8.4981 0.6824 -8.3886
44 1 3.9934 -1.5504 -0.7395
45 1 3.9764 0.2303 -0.9131
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001569827065.mol2 45
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 03:55:25
Heat of formation + Delta-G solvation = 70.258621 kcal
Electronic energy + Delta-G solvation = -29849.399631 eV
Core-core repulsion = 25677.370628 eV
Total energy + Delta-G solvation = -4172.029002 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 345.159 amu
Computer time = 2.16 seconds
Orbital eigenvalues (eV)
-43.90389 -40.21989 -38.55278 -38.12509 -37.69533 -35.24751 -34.13212 -32.46449
-31.59589 -30.56076 -29.56671 -28.57363 -28.10784 -25.62523 -24.09285 -23.82222
-23.63896 -22.73294 -21.55226 -20.45988 -19.67742 -19.07144 -18.66694 -17.77872
-17.44743 -17.06371 -16.51021 -16.16232 -16.06498 -15.46933 -15.21917 -14.71321
-14.24352 -13.97445 -13.74794 -13.63995 -13.23001 -13.09832 -13.04308 -12.80270
-12.68958 -12.55700 -12.20303 -12.12911 -11.99508 -11.66981 -11.45665 -11.30440
-10.88247 -10.81686 -10.77624 -10.60087 -10.56044 -10.21297 -10.07406 -9.97288
-9.85424 -9.60439 -8.88845 -8.64609 -8.49962 -6.94060 -5.72785 -3.02052
-0.19242 0.52600 1.35491 2.10388 2.38963 2.73995 3.07841 3.16789
3.46910 3.52299 3.54402 3.54848 3.78560 4.09247 4.15800 4.34081
4.58104 4.60741 4.79247 4.81203 4.92739 5.01888 5.12491 5.28077
5.33779 5.36001 5.43312 5.56326 5.60914 5.64105 5.84438 5.86883
5.90428 6.02119 6.02400 6.15628 6.28731 6.35203 6.37437 6.54951
6.61647 6.73980 6.84192 7.06324 7.47814 7.73264 8.09138 8.09886
8.45127 9.56651 10.12802 10.46985 11.49641
Molecular weight = 345.16amu
Principal moments of inertia in cm(-1)
A = 0.017270 B = 0.002429 C = 0.002220
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1620.873488 B =11526.855161 C =12608.765572
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.164 4.164
2 C 0.184 3.816
3 H 0.049 0.951
4 N -0.724 5.724
5 C -0.239 4.239
6 H 0.070 0.930
7 C -0.012 4.012
8 N -0.930 5.930
9 Si 0.905 3.095
10 H -0.291 1.291
11 H -0.292 1.292
12 H -0.282 1.282
13 C -0.101 4.101
14 H 0.082 0.918
15 C -0.124 4.124
16 C 0.095 3.905
17 N -0.611 5.611
18 C 0.577 3.423
19 O -0.502 6.502
20 C -0.068 4.068
21 C -0.055 4.055
22 C -0.138 4.138
23 C 0.082 3.918
24 N -0.405 5.405
25 C 0.314 3.686
26 O -0.426 6.426
27 N -0.236 5.236
28 N -0.247 5.247
29 C 0.231 3.769
30 C 0.121 3.879
31 H 0.037 0.963
32 H 0.046 0.954
33 H 0.053 0.947
34 H 0.384 0.616
35 H 0.255 0.745
36 H 0.083 0.917
37 H 0.079 0.921
38 H 0.066 0.934
39 H 0.067 0.933
40 H 0.160 0.840
41 H 0.164 0.836
42 H 0.173 0.827
43 H 0.405 0.595
44 H 0.088 0.912
45 H 0.076 0.924
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -1.989 3.002 -30.516 30.727
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.224 4.224
2 C 0.074 3.926
3 H 0.067 0.933
4 N -0.366 5.366
5 C -0.370 4.370
6 H 0.088 0.912
7 C -0.208 4.208
8 N -0.578 5.578
9 Si 0.736 3.264
10 H -0.218 1.218
11 H -0.218 1.218
12 H -0.208 1.208
13 C -0.122 4.122
14 H 0.101 0.899
15 C -0.163 4.163
16 C -0.028 4.028
17 N -0.345 5.345
18 C 0.362 3.638
19 O -0.376 6.376
20 C -0.075 4.075
21 C -0.079 4.079
22 C -0.160 4.160
23 C -0.040 4.040
24 N -0.098 5.098
25 C 0.015 3.985
26 O -0.225 6.225
27 N -0.085 5.085
28 N -0.093 5.093
29 C -0.021 4.021
30 C 0.000 4.000
31 H 0.056 0.944
32 H 0.065 0.935
33 H 0.072 0.928
34 H 0.218 0.782
35 H 0.065 0.935
36 H 0.101 0.899
37 H 0.098 0.902
38 H 0.084 0.916
39 H 0.085 0.915
40 H 0.178 0.822
41 H 0.182 0.818
42 H 0.190 0.810
43 H 0.262 0.738
44 H 0.106 0.894
45 H 0.094 0.906
Dipole moment (debyes) X Y Z Total
from point charges 0.072 2.826 -28.998 29.135
hybrid contribution -0.865 0.186 -0.497 1.014
sum -0.792 3.012 -29.495 29.659
Atomic orbital electron populations
1.22443 0.99096 1.00870 0.99971 1.20155 0.91901 0.95195 0.85344
0.93272 1.42414 1.78163 1.10731 1.05250 1.19181 1.36763 0.93819
0.87271 0.91245 1.24731 1.02054 0.95957 0.98040 1.69656 1.50667
1.08652 1.28872 0.86227 0.77222 0.78864 0.84097 1.21847 1.21795
1.20783 1.22683 0.93956 1.00349 0.95162 0.89948 1.22687 0.97449
1.01285 0.94847 1.22252 0.87003 0.98592 0.94910 1.48437 1.14746
1.62079 1.09269 1.17036 0.81506 0.79278 0.85934 1.90934 1.43536
1.44207 1.58890 1.20111 0.89245 1.03277 0.94841 1.21944 0.98684
0.95052 0.92205 1.20811 0.96624 1.02320 0.96206 1.21728 0.87297
0.98236 0.96748 1.44061 1.12510 1.43978 1.09275 1.21787 0.81286
1.06125 0.89346 1.85030 1.69160 1.39994 1.28348 1.74721 1.22771
1.16656 0.94372 1.74983 0.96884 1.16541 1.20888 1.22586 0.96935
1.03562 0.78967 1.22339 0.95171 1.03606 0.78862 0.94444 0.93508
0.92761 0.78233 0.93494 0.89888 0.90230 0.91551 0.91470 0.82216
0.81825 0.81009 0.73811 0.89351 0.90614
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.16 -2.64 9.34 37.16 0.35 -2.30 16
2 C 0.18 3.31 2.41 -67.93 -0.16 3.15 16
3 H 0.05 0.91 8.05 -51.93 -0.42 0.49 16
4 N -0.72 -17.26 4.82 -53.43 -0.26 -17.52 16
5 C -0.24 -6.48 9.93 -15.06 -0.15 -6.63 16
6 H 0.07 1.83 7.83 -52.49 -0.41 1.42 16
7 C -0.01 -0.33 5.50 -17.43 -0.10 -0.43 16
8 N -0.93 -28.16 13.06 55.49 0.72 -27.44 16
9 Si 0.90 22.55 29.55 -169.99 -5.02 17.52 16
10 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16
11 H -0.29 -7.40 7.11 56.52 0.40 -7.00 16
12 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16
13 C -0.10 -1.46 2.63 -88.47 -0.23 -1.69 16
14 H 0.08 1.20 8.14 -51.93 -0.42 0.77 16
15 C -0.12 -1.24 5.58 -24.90 -0.14 -1.37 16
16 C 0.10 0.87 5.72 -3.06 -0.02 0.86 16
17 N -0.61 -8.48 3.33 -171.87 -0.57 -9.05 16
18 C 0.58 9.16 7.45 -12.62 -0.09 9.07 16
19 O -0.50 -10.51 17.28 5.24 0.09 -10.42 16
20 C -0.07 -0.82 5.60 -102.69 -0.57 -1.40 16
21 C -0.05 -0.38 8.63 -38.72 -0.33 -0.72 16
22 C -0.14 -0.57 9.91 -40.09 -0.40 -0.97 16
23 C 0.08 0.44 10.93 -16.73 -0.18 0.26 16
24 N -0.41 -4.07 2.97 -62.51 -0.19 -4.26 16
25 C 0.31 3.47 9.41 -88.65 -0.83 2.64 16
26 O -0.43 -3.01 13.65 -18.85 -0.26 -3.27 16
27 N -0.24 -3.58 12.20 29.71 0.36 -3.22 16
28 N -0.25 -4.23 12.26 32.37 0.40 -3.84 16
29 C 0.23 3.21 7.89 -153.91 -1.21 1.99 16
30 C 0.12 2.02 6.11 -2.53 -0.02 2.00 16
31 H 0.04 0.47 7.50 -51.92 -0.39 0.08 16
32 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16
33 H 0.05 0.98 8.14 -51.93 -0.42 0.55 16
34 H 0.38 9.88 7.80 -40.82 -0.32 9.56 16
35 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16
36 H 0.08 0.65 8.13 -51.93 -0.42 0.23 16
37 H 0.08 0.79 8.01 -51.93 -0.42 0.37 16
38 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16
39 H 0.07 0.43 5.84 -51.93 -0.30 0.12 16
40 H 0.16 0.76 5.87 -52.49 -0.31 0.45 16
41 H 0.16 0.02 8.06 -52.49 -0.42 -0.40 16
42 H 0.17 0.26 8.06 -52.48 -0.42 -0.16 16
43 H 0.40 0.53 9.06 45.56 0.41 0.94 16
44 H 0.09 1.75 7.99 -51.93 -0.42 1.34 16
45 H 0.08 1.37 8.04 -51.93 -0.42 0.96 16
LS Contribution 378.58 15.07 5.71 5.71
Total: -1.00 -39.01 378.58 -8.19 -47.20
By element:
Atomic # 1 Polarization: 9.20 SS G_CDS: -5.08 Total: 4.13 kcal
Atomic # 6 Polarization: 8.56 SS G_CDS: -4.10 Total: 4.46 kcal
Atomic # 7 Polarization: -65.79 SS G_CDS: 0.47 Total: -65.32 kcal
Atomic # 8 Polarization: -13.52 SS G_CDS: -0.17 Total: -13.69 kcal
Atomic # 14 Polarization: 22.55 SS G_CDS: -5.02 Total: 17.52 kcal
Total LS contribution 5.71 Total: 5.71 kcal
Total: -39.01 -8.19 -47.20 kcal
The number of atoms in the molecule is 45
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001569827065.mol2 45
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 117.456 kcal
(2) G-P(sol) polarization free energy of solvation -39.006 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.451 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.192 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.198 kcal
(6) G-S(sol) free energy of system = (1) + (5) 70.259 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 2.16 seconds