Wall clock time and date at job start Wed Apr 1 2020 03:55:17
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52999 * 1
3 3 H 1.08998 * 109.47436 * 2 1
4 4 N 1.46500 * 109.46830 * 119.99456 * 2 1 3
5 5 C 1.36938 * 120.00222 * 274.99858 * 4 2 1
6 6 H 1.07997 * 119.99652 * 0.02562 * 5 4 2
7 7 C 1.38817 * 120.00102 * 180.02562 * 5 4 2
8 8 N 1.31621 * 119.99606 * 359.97438 * 7 5 4
9 9 Si 1.86797 * 120.00011 * 180.02562 * 7 5 4
10 10 H 1.48499 * 109.47141 * 89.99768 * 9 7 5
11 11 H 1.48493 * 109.46878 * 209.99557 * 9 7 5
12 12 H 1.48493 * 109.47084 * 330.00109 * 9 7 5
13 13 C 1.52998 * 109.47309 * 239.99669 * 2 1 3
14 14 H 1.08995 * 110.88573 * 302.42488 * 13 2 1
15 15 C 1.55151 * 111.00473 * 66.35037 * 13 2 1
16 16 C 1.54332 * 103.02161 * 153.38163 * 15 13 2
17 17 N 1.47020 * 107.26554 * 338.14023 * 16 15 13
18 18 C 1.34776 * 125.64909 * 178.84758 * 17 16 15
19 19 O 1.21643 * 119.99858 * 184.51548 * 18 17 16
20 20 C 1.47202 * 119.99970 * 4.51670 * 18 17 16
21 21 C 1.38841 * 120.90153 * 313.54286 * 20 18 17
22 22 C 1.39938 * 119.43282 * 179.75573 * 21 20 18
23 23 C 1.35013 * 121.26553 * 0.48725 * 22 21 20
24 24 N 1.36260 * 121.58376 * 359.48786 * 23 22 21
25 25 C 1.36367 * 133.87745 * 180.27588 * 24 23 22
26 26 O 1.35715 * 126.33638 * 359.97438 * 25 24 23
27 27 N 1.31109 * 107.32831 * 179.97438 * 25 24 23
28 28 N 1.28692 * 110.31289 * 0.02562 * 27 25 24
29 29 C 1.31483 * 109.67150 * 359.97438 * 28 27 25
30 30 C 1.47424 * 108.70468 * 358.58451 * 17 16 15
31 31 H 1.09009 * 109.46929 * 60.00287 * 1 2 3
32 32 H 1.08998 * 109.47436 * 180.02562 * 1 2 3
33 33 H 1.09001 * 109.47162 * 300.00250 * 1 2 3
34 34 H 0.97002 * 119.99855 * 95.00744 * 4 2 1
35 35 H 0.97005 * 119.99376 * 180.02562 * 8 7 5
36 36 H 1.08998 * 110.72061 * 271.93937 * 15 13 2
37 37 H 1.09000 * 110.72011 * 35.03737 * 15 13 2
38 38 H 1.08997 * 109.99582 * 218.66855 * 16 15 13
39 39 H 1.08997 * 109.78355 * 97.49681 * 16 15 13
40 40 H 1.08002 * 120.28743 * 359.97438 * 21 20 18
41 41 H 1.07998 * 119.36466 * 180.25519 * 22 21 20
42 42 H 1.08004 * 119.21044 * 179.76061 * 23 22 21
43 43 H 0.96704 * 113.99462 * 90.00303 * 26 25 24
44 44 H 1.08994 * 110.36844 * 143.18910 * 30 17 16
45 45 H 1.08992 * 110.36897 * 265.40970 * 30 17 16
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8934 1.0276 0.0000
4 7 2.0183 -0.6905 1.1963
5 6 2.1490 -0.0073 2.3758
6 1 1.8918 1.0405 2.4243
7 6 2.6122 -0.6615 3.5092
8 7 2.9252 -1.9386 3.4501
9 14 2.7899 0.2703 5.1183
10 1 1.5223 0.1782 5.8863
11 1 3.8948 -0.3223 5.9140
12 1 3.0938 1.6957 4.8340
13 6 2.0400 -0.7213 -1.2492
14 1 1.6548 -1.7399 -1.2942
15 6 1.6776 0.0686 -2.5344
16 6 2.7788 -0.3591 -3.5276
17 7 3.9165 -0.8466 -2.7342
18 6 5.0708 -1.3324 -3.2324
19 8 5.9143 -1.7851 -2.4819
20 6 5.3107 -1.3151 -4.6846
21 6 4.3336 -1.7420 -5.5738
22 6 4.5926 -1.7077 -6.9486
23 6 5.7789 -1.2761 -7.4276
24 7 6.7701 -0.8465 -6.5972
25 6 8.0302 -0.3658 -6.7991
26 8 8.6415 -0.1905 -7.9980
27 7 8.5419 -0.1043 -5.6206
28 7 7.6951 -0.3863 -4.6934
29 6 6.5870 -0.8464 -5.2310
30 6 3.5882 -0.7103 -1.3035
31 1 -0.3633 0.5138 -0.8901
32 1 -0.3634 -1.0276 0.0005
33 1 -0.3633 0.5139 0.8900
34 1 2.2490 -1.6317 1.1527
35 1 3.2485 -2.3958 4.2422
36 1 0.6922 -0.2204 -2.8997
37 1 1.7201 1.1424 -2.3520
38 1 3.0871 0.4938 -4.1322
39 1 2.4063 -1.1566 -4.1704
40 1 3.3805 -2.0943 -5.2079
41 1 3.8303 -2.0361 -7.6395
42 1 5.9446 -1.2672 -8.4948
43 1 8.4981 0.6824 -8.3886
44 1 3.9934 -1.5504 -0.7395
45 1 3.9764 0.2303 -0.9131
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001569827065.mol2 45
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 03:55:17
Heat of formation + Delta-G solvation = 37.271249 kcal
Electronic energy + Delta-G solvation = -29850.830070 eV
Core-core repulsion = 25677.370628 eV
Total energy + Delta-G solvation = -4173.459442 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 345.159 amu
Computer time = 2.54 seconds
Orbital eigenvalues (eV)
-44.69786 -41.30616 -39.34624 -38.85792 -38.75766 -36.79556 -34.98390 -34.16629
-32.39533 -31.88744 -30.45176 -29.99753 -29.35207 -26.43941 -25.87782 -24.73558
-24.54374 -23.57701 -22.83543 -21.26943 -21.05042 -19.94571 -19.42092 -19.09802
-18.48588 -18.19118 -17.49400 -17.33929 -16.69085 -16.53870 -16.36984 -15.84936
-15.57007 -15.39466 -15.11599 -14.60074 -14.33913 -14.14106 -13.87439 -13.78125
-13.73819 -13.51851 -13.42713 -13.26524 -13.08964 -12.95325 -12.81277 -12.56251
-12.35395 -12.22480 -12.15924 -12.00552 -11.67867 -11.63760 -11.50585 -11.31845
-11.15014 -10.91626 -10.77066 -9.74930 -9.26846 -8.96363 -7.91513 -5.18308
-0.81008 -0.12630 0.62310 1.35659 1.44285 1.45543 1.47818 1.55435
1.79585 2.21018 2.50685 2.57312 2.93469 3.08476 3.37510 3.43441
3.63208 3.68057 3.71511 3.76307 3.91341 4.19236 4.25022 4.33737
4.39182 4.48526 4.58614 4.65216 4.67910 4.69129 4.77059 4.87281
4.91281 4.93411 5.02103 5.12814 5.15119 5.18347 5.27099 5.37274
5.46242 5.55575 5.56294 5.70668 6.28684 6.31267 6.41562 6.98018
7.23930 7.37029 8.16396 8.36011 9.32203
Molecular weight = 345.16amu
Principal moments of inertia in cm(-1)
A = 0.017270 B = 0.002429 C = 0.002220
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1620.873488 B =11526.855161 C =12608.765572
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.151 4.151
2 C 0.176 3.824
3 H 0.042 0.958
4 N -0.739 5.739
5 C -0.229 4.229
6 H 0.076 0.924
7 C -0.081 4.081
8 N -0.971 5.971
9 Si 0.966 3.034
10 H -0.285 1.285
11 H -0.302 1.302
12 H -0.270 1.270
13 C -0.090 4.090
14 H 0.085 0.915
15 C -0.112 4.112
16 C 0.089 3.911
17 N -0.608 5.608
18 C 0.572 3.428
19 O -0.579 6.579
20 C -0.128 4.128
21 C -0.002 4.002
22 C -0.128 4.128
23 C 0.090 3.910
24 N -0.403 5.403
25 C 0.332 3.668
26 O -0.419 6.419
27 N -0.289 5.289
28 N -0.326 5.326
29 C 0.224 3.776
30 C 0.124 3.876
31 H 0.084 0.916
32 H 0.043 0.957
33 H 0.030 0.970
34 H 0.370 0.630
35 H 0.248 0.752
36 H 0.123 0.877
37 H 0.083 0.917
38 H 0.088 0.912
39 H 0.111 0.889
40 H 0.191 0.809
41 H 0.225 0.775
42 H 0.222 0.778
43 H 0.431 0.569
44 H 0.038 0.962
45 H 0.047 0.953
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -5.751 3.713 -36.221 36.862
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.211 4.211
2 C 0.068 3.932
3 H 0.061 0.939
4 N -0.379 5.379
5 C -0.361 4.361
6 H 0.094 0.906
7 C -0.273 4.273
8 N -0.623 5.623
9 Si 0.796 3.204
10 H -0.212 1.212
11 H -0.229 1.229
12 H -0.195 1.195
13 C -0.110 4.110
14 H 0.103 0.897
15 C -0.150 4.150
16 C -0.031 4.031
17 N -0.340 5.340
18 C 0.361 3.639
19 O -0.459 6.459
20 C -0.135 4.135
21 C -0.026 4.026
22 C -0.148 4.148
23 C -0.031 4.031
24 N -0.096 5.096
25 C 0.030 3.970
26 O -0.222 6.222
27 N -0.137 5.137
28 N -0.171 5.171
29 C -0.029 4.029
30 C 0.001 3.999
31 H 0.103 0.897
32 H 0.063 0.937
33 H 0.049 0.951
34 H 0.201 0.799
35 H 0.056 0.944
36 H 0.142 0.858
37 H 0.102 0.898
38 H 0.106 0.894
39 H 0.129 0.871
40 H 0.208 0.792
41 H 0.241 0.759
42 H 0.238 0.762
43 H 0.293 0.707
44 H 0.057 0.943
45 H 0.066 0.934
Dipole moment (debyes) X Y Z Total
from point charges -3.754 3.633 -34.789 35.179
hybrid contribution 0.220 -0.017 0.975 0.999
sum -3.534 3.616 -33.814 34.190
Atomic orbital electron populations
1.22257 0.96585 1.01084 1.01156 1.20464 0.93434 0.94629 0.84667
0.93947 1.42669 1.78487 1.10272 1.06431 1.19585 1.34129 0.94079
0.88314 0.90624 1.25507 1.03463 0.96858 1.01428 1.69821 1.53028
1.10272 1.29146 0.85236 0.76781 0.78061 0.80340 1.21214 1.22925
1.19546 1.22498 0.91470 1.01005 0.96043 0.89700 1.22745 0.99636
1.00764 0.91811 1.22664 0.84811 1.00894 0.94730 1.48487 1.15804
1.61354 1.08363 1.17750 0.80755 0.77770 0.87646 1.90873 1.45982
1.47711 1.61329 1.19714 0.90868 1.10000 0.92901 1.22517 0.97736
0.89365 0.92955 1.21512 0.97301 1.00749 0.95280 1.22888 0.86242
0.95505 0.98448 1.44179 1.12995 1.44006 1.08386 1.21692 0.81431
1.04354 0.89560 1.85011 1.68695 1.42174 1.26354 1.74499 1.24137
1.19135 0.95973 1.74815 0.99089 1.20299 1.22925 1.22747 0.96628
1.02908 0.80646 1.22017 0.97091 0.99995 0.80775 0.89709 0.93745
0.95052 0.79857 0.94370 0.85837 0.89834 0.89377 0.87095 0.79156
0.75853 0.76170 0.70665 0.94312 0.93430
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -4.55 9.34 71.98 0.67 -3.87 16
2 C 0.18 6.29 2.41 44.99 0.11 6.40 16
3 H 0.04 1.57 8.05 -2.39 -0.02 1.55 16
4 N -0.74 -36.65 4.82 -322.94 -1.56 -38.21 16
5 C -0.23 -12.79 9.93 84.03 0.83 -11.95 16
6 H 0.08 4.05 7.83 -2.91 -0.02 4.02 16
7 C -0.08 -4.78 5.50 84.86 0.47 -4.31 16
8 N -0.97 -61.84 13.06 21.65 0.28 -61.56 16
9 Si 0.97 47.96 29.55 68.60 2.03 49.99 16
10 H -0.29 -13.73 7.11 99.48 0.71 -13.02 16
11 H -0.30 -15.39 7.11 99.48 0.71 -14.69 16
12 H -0.27 -12.72 7.11 99.48 0.71 -12.01 16
13 C -0.09 -2.52 2.63 -9.40 -0.02 -2.55 16
14 H 0.08 2.37 8.14 -2.39 -0.02 2.35 16
15 C -0.11 -1.74 5.58 31.78 0.18 -1.56 16
16 C 0.09 1.28 5.72 86.73 0.50 1.77 16
17 N -0.61 -17.07 3.33 -815.90 -2.71 -19.79 16
18 C 0.57 19.31 7.45 86.60 0.65 19.95 16
19 O -0.58 -27.28 17.28 -4.17 -0.07 -27.35 16
20 C -0.13 -3.02 5.60 -18.62 -0.10 -3.12 16
21 C 0.00 -0.02 8.63 22.83 0.20 0.18 16
22 C -0.13 -0.12 9.91 21.94 0.22 0.10 16
23 C 0.09 0.44 10.93 83.26 0.91 1.35 16
24 N -0.40 -7.24 2.97 -462.35 -1.37 -8.62 16
25 C 0.33 7.11 9.41 179.66 1.69 8.80 16
26 O -0.42 -4.93 13.65 -90.37 -1.23 -6.17 16
27 N -0.29 -9.45 12.20 -173.35 -2.11 -11.56 16
28 N -0.33 -12.26 12.26 -51.51 -0.63 -12.89 16
29 C 0.22 6.37 7.89 135.67 1.07 7.44 16
30 C 0.12 4.45 6.11 86.86 0.53 4.98 16
31 H 0.08 1.76 7.50 -2.38 -0.02 1.74 16
32 H 0.04 1.36 8.14 -2.39 -0.02 1.34 16
33 H 0.03 1.07 8.14 -2.39 -0.02 1.05 16
34 H 0.37 20.20 7.80 -92.71 -0.72 19.48 16
35 H 0.25 15.44 8.31 -92.70 -0.77 14.67 16
36 H 0.12 1.05 8.13 -2.39 -0.02 1.03 16
37 H 0.08 1.30 8.01 -2.39 -0.02 1.28 16
38 H 0.09 0.98 8.14 -2.39 -0.02 0.96 16
39 H 0.11 0.64 5.84 -2.39 -0.01 0.63 16
40 H 0.19 0.45 5.87 -2.91 -0.02 0.44 16
41 H 0.22 -2.28 8.06 -2.91 -0.02 -2.30 16
42 H 0.22 -1.08 8.06 -2.91 -0.02 -1.10 16
43 H 0.43 -0.17 9.06 -74.05 -0.67 -0.84 16
44 H 0.04 1.74 7.99 -2.39 -0.02 1.72 16
45 H 0.05 1.92 8.04 -2.39 -0.02 1.90 16
Total: -1.00 -102.53 378.58 0.17 -102.37
By element:
Atomic # 1 Polarization: 10.52 SS G_CDS: -0.34 Total: 10.18 kcal
Atomic # 6 Polarization: 15.72 SS G_CDS: 7.89 Total: 23.61 kcal
Atomic # 7 Polarization: -144.52 SS G_CDS: -8.11 Total: -152.62 kcal
Atomic # 8 Polarization: -32.21 SS G_CDS: -1.31 Total: -33.52 kcal
Atomic # 14 Polarization: 47.96 SS G_CDS: 2.03 Total: 49.99 kcal
Total: -102.53 0.17 -102.37 kcal
The number of atoms in the molecule is 45
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001569827065.mol2 45
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 139.637 kcal
(2) G-P(sol) polarization free energy of solvation -102.533 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.104 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.168 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -102.366 kcal
(6) G-S(sol) free energy of system = (1) + (5) 37.271 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 2.55 seconds