Wall clock time and date at job start Wed Apr 1 2020 02:52:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08991 * 110.30892 * 2 1 4 4 C 1.54397 * 110.34179 * 122.28987 * 2 1 3 5 5 N 1.48141 * 104.61901 * 142.73338 * 4 2 1 6 6 C 1.34775 * 127.83638 * 140.43147 * 5 4 2 7 7 O 1.21652 * 120.00038 * 186.97653 * 6 5 4 8 8 C 1.47057 * 120.00137 * 6.98193 * 6 5 4 9 9 C 1.38006 * 125.91903 * 187.31929 * 8 6 5 10 10 C 1.39360 * 107.48243 * 179.87759 * 9 8 6 11 11 C 1.38071 * 107.51775 * 0.38405 * 10 9 8 12 12 C 1.43206 * 125.89672 * 179.72745 * 11 10 9 13 13 N 6.98620 * 100.59355 * 87.64815 * 2 1 3 14 14 N 1.36724 * 108.20998 * 359.76216 * 11 10 9 15 15 H 0.97002 * 125.68934 * 179.97438 * 14 11 10 16 16 C 1.48148 * 104.32572 * 320.41393 * 5 4 2 17 17 C 1.54283 * 110.34237 * 237.81993 * 2 1 3 18 18 H 1.09003 * 110.34401 * 122.15335 * 17 2 1 19 19 N 1.46905 * 110.34502 * 0.02562 * 17 2 1 20 20 C 1.46895 * 111.00365 * 163.87330 * 19 17 2 21 21 C 1.50698 * 109.47323 * 180.02562 * 20 19 17 22 22 O 1.21294 * 119.99844 * 0.02562 * 21 20 19 23 23 N 1.34778 * 119.99885 * 180.02562 * 21 20 19 24 24 C 1.37097 * 119.99607 * 179.97438 * 23 21 20 25 25 H 1.08005 * 120.00325 * 359.97438 * 24 23 21 26 26 C 1.38949 * 120.00165 * 179.97438 * 24 23 21 27 27 N 1.31415 * 119.99677 * 0.02562 * 26 24 23 28 28 Si 1.86802 * 120.00486 * 180.02562 * 26 24 23 29 29 H 1.48502 * 109.46652 * 0.02562 * 28 26 24 30 30 H 1.48499 * 109.46808 * 119.99944 * 28 26 24 31 31 H 1.48497 * 109.47312 * 240.00540 * 28 26 24 32 32 H 1.08993 * 109.47277 * 176.34141 * 1 2 3 33 33 H 1.09004 * 109.47046 * 296.34369 * 1 2 3 34 34 H 1.08999 * 109.46493 * 56.33682 * 1 2 3 35 35 H 1.09003 * 110.39975 * 261.52115 * 4 2 1 36 36 H 1.09000 * 110.40478 * 23.83169 * 4 2 1 37 37 H 1.07996 * 126.25930 * 0.02562 * 9 8 6 38 38 H 1.08005 * 126.24245 * 180.14429 * 10 9 8 39 39 H 1.08998 * 110.40321 * 280.80229 * 16 5 4 40 40 H 1.09000 * 110.40378 * 158.36769 * 16 5 4 41 41 H 1.00902 * 110.99631 * 39.92309 * 19 17 2 42 42 H 1.09007 * 109.46941 * 59.99907 * 20 19 17 43 43 H 1.09002 * 109.47570 * 300.00677 * 20 19 17 44 44 H 0.96993 * 120.00233 * 359.97438 * 23 21 20 45 45 H 0.96998 * 120.00103 * 180.02562 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9083 1.0222 0.0000 4 6 2.0667 -0.7734 1.2238 5 7 3.2663 -1.4826 0.7213 6 6 4.4422 -1.6682 1.3531 7 8 5.3804 -2.1645 0.7587 8 6 4.5911 -1.2710 2.7612 9 6 5.7675 -1.2719 3.4826 10 6 5.4703 -0.8255 4.7688 11 6 4.1148 -0.5668 4.8161 12 6 3.3896 -0.0936 5.9566 13 7 2.8143 0.2818 6.8613 14 7 3.5844 -0.8412 3.5862 15 1 2.6511 -0.7477 3.3387 16 6 2.8801 -1.9418 -0.6333 17 6 2.0663 -0.7704 -1.2244 18 1 2.7080 -0.1266 -1.8259 19 7 0.9524 -1.2800 -2.0353 20 6 1.4121 -1.6724 -3.3741 21 6 0.2445 -2.1881 -4.1751 22 8 -0.8620 -2.2248 -3.6796 23 7 0.4298 -2.6087 -5.4421 24 6 -0.6324 -3.0784 -6.1706 25 1 -1.6176 -3.1118 -5.7291 26 6 -0.4417 -3.5115 -7.4770 27 7 0.7570 -3.4714 -8.0141 28 14 -1.8890 -4.1509 -8.4700 29 1 -3.1210 -4.0924 -7.6429 30 1 -2.0669 -3.3117 -9.6821 31 1 -1.6299 -5.5561 -8.8742 32 1 -0.3633 -1.0255 -0.0656 33 1 -0.3633 0.4561 0.9210 34 1 -0.3632 0.5697 -0.8554 35 1 2.3400 -0.0815 2.0205 36 1 1.3226 -1.4862 1.5791 37 1 6.7410 -1.5630 3.1166 38 1 6.1715 -0.7074 5.5818 39 1 2.2638 -2.8385 -0.5691 40 1 3.7672 -2.1314 -1.2376 41 1 0.2075 -0.6018 -2.0932 42 1 2.1658 -2.4548 -3.2846 43 1 1.8443 -0.8077 -3.8779 44 1 1.3145 -2.5791 -5.8385 45 1 0.8902 -3.7734 -8.9262 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001570337269.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:52:36 Heat of formation + Delta-G solvation = 34.002493 kcal Electronic energy + Delta-G solvation = -28961.101131 eV Core-core repulsion = 24787.499945 eV Total energy + Delta-G solvation = -4173.601186 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -42.07712 -40.17756 -38.59878 -37.92753 -36.98276 -35.01093 -33.89803 -32.52974 -31.96377 -31.24596 -30.68086 -28.88938 -27.15599 -26.23406 -24.73175 -23.88338 -22.78287 -21.60084 -21.12560 -19.62380 -19.43125 -19.05809 -18.00230 -17.70589 -16.61744 -16.19738 -15.89737 -15.82617 -15.47452 -15.19272 -14.96115 -14.59396 -14.46111 -14.05152 -13.96676 -13.87754 -13.80309 -13.67509 -13.39509 -13.25262 -13.03569 -12.76036 -12.56180 -12.49819 -12.32774 -12.08415 -11.81147 -11.57758 -11.31645 -11.16247 -11.01803 -10.95343 -10.50982 -10.37575 -10.26357 -9.73121 -9.56241 -9.24322 -8.83741 -8.54913 -8.21430 -8.00848 -6.45678 -3.86775 0.44422 1.64885 1.67544 2.36570 2.55189 2.87597 2.88479 3.13466 3.24531 3.31253 3.39585 3.84748 3.88009 4.00942 4.04127 4.24723 4.30242 4.51355 4.59359 4.69872 4.81050 4.98154 5.00013 5.16162 5.21063 5.25593 5.31651 5.36111 5.46686 5.53997 5.60374 5.64418 5.72104 5.82747 5.87464 5.90580 5.99563 6.16986 6.18532 6.21515 6.47242 6.84479 7.03481 7.08290 7.49420 7.51600 7.66850 8.01798 8.56118 9.13553 9.49607 10.00199 10.71916 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.024624 B = 0.001859 C = 0.001763 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1136.814207 B =15061.410073 C =15879.863617 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.101 4.101 3 H 0.083 0.917 4 C 0.094 3.906 5 N -0.623 5.623 6 C 0.606 3.394 7 O -0.515 6.515 8 C 0.004 3.996 9 C -0.113 4.113 10 C -0.122 4.122 11 C 0.084 3.916 12 C 0.274 3.726 13 N -0.394 5.394 14 N -0.519 5.519 15 H 0.424 0.576 16 C 0.115 3.885 17 C 0.074 3.926 18 H 0.057 0.943 19 N -0.658 5.658 20 C 0.046 3.954 21 C 0.440 3.560 22 O -0.585 6.585 23 N -0.562 5.562 24 C -0.300 4.300 25 H 0.104 0.896 26 C 0.022 3.978 27 N -0.900 5.900 28 Si 0.930 3.070 29 H -0.268 1.268 30 H -0.282 1.282 31 H -0.281 1.281 32 H 0.082 0.918 33 H 0.055 0.945 34 H 0.064 0.936 35 H 0.070 0.930 36 H 0.086 0.914 37 H 0.163 0.837 38 H 0.159 0.841 39 H 0.092 0.908 40 H 0.087 0.913 41 H 0.357 0.643 42 H 0.087 0.913 43 H 0.046 0.954 44 H 0.393 0.607 45 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.284 8.146 21.649 24.924 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.120 4.120 3 H 0.101 0.899 4 C -0.030 4.030 5 N -0.357 5.357 6 C 0.395 3.605 7 O -0.390 6.390 8 C -0.114 4.114 9 C -0.139 4.139 10 C -0.151 4.151 11 C -0.033 4.033 12 C -0.042 4.042 13 N -0.071 5.071 14 N -0.121 5.121 15 H 0.269 0.731 16 C -0.007 4.007 17 C -0.037 4.037 18 H 0.074 0.926 19 N -0.295 5.295 20 C -0.087 4.087 21 C 0.226 3.774 22 O -0.469 6.469 23 N -0.198 5.198 24 C -0.430 4.430 25 H 0.122 0.878 26 C -0.179 4.179 27 N -0.541 5.541 28 Si 0.757 3.243 29 H -0.192 1.192 30 H -0.208 1.208 31 H -0.207 1.207 32 H 0.101 0.899 33 H 0.074 0.926 34 H 0.083 0.917 35 H 0.088 0.912 36 H 0.104 0.896 37 H 0.180 0.820 38 H 0.177 0.823 39 H 0.110 0.890 40 H 0.105 0.895 41 H 0.181 0.819 42 H 0.105 0.895 43 H 0.064 0.936 44 H 0.226 0.774 45 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 8.153 7.724 23.059 25.648 hybrid contribution -0.231 0.505 -1.715 1.803 sum 7.922 8.229 21.343 24.208 Atomic orbital electron populations 1.21777 0.92720 1.04336 1.01695 1.22168 0.97578 0.98886 0.93387 0.89855 1.22771 0.87380 0.95585 0.97237 1.48832 1.12431 1.55889 1.18554 1.16617 0.81287 0.78817 0.83777 1.90893 1.37865 1.44498 1.65754 1.20625 0.89031 1.10101 0.91667 1.21306 0.97549 1.02647 0.92402 1.21299 0.91987 1.03326 0.98443 1.15645 0.92123 1.12706 0.82853 1.24319 0.93614 0.93503 0.92769 1.81354 1.06303 1.09646 1.09801 1.42653 1.11011 1.49908 1.08534 0.73125 1.22523 0.99237 0.97648 0.81332 1.22387 0.92874 0.94366 0.94085 0.92560 1.60314 1.09113 1.46760 1.13305 1.21765 0.97605 1.00167 0.89121 1.19747 0.89677 0.84943 0.83075 1.90520 1.25636 1.60192 1.70568 1.41871 1.11530 1.55607 1.10836 1.19748 0.90665 1.38181 0.94371 0.87836 1.25276 0.97792 0.97646 0.97222 1.69619 1.21188 1.47584 1.15724 0.85799 0.80962 0.78288 0.79286 1.19221 1.20766 1.20710 0.89860 0.92607 0.91717 0.91155 0.89554 0.81951 0.82303 0.88961 0.89485 0.81894 0.89490 0.93648 0.77427 0.91865 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.18 7.81 37.16 0.29 -0.89 16 2 C -0.10 -0.77 3.66 -89.22 -0.33 -1.10 16 3 H 0.08 0.57 8.14 -51.93 -0.42 0.14 16 4 C 0.09 0.62 5.35 -2.41 -0.01 0.60 16 5 N -0.62 -5.83 3.32 -170.70 -0.57 -6.40 16 6 C 0.61 6.46 7.88 -12.69 -0.10 6.36 16 7 O -0.52 -7.30 17.13 5.23 0.09 -7.21 16 8 C 0.00 0.03 6.84 -82.04 -0.56 -0.53 16 9 C -0.11 -0.79 10.61 -39.25 -0.42 -1.20 16 10 C -0.12 -0.67 10.80 -39.23 -0.42 -1.09 16 11 C 0.08 0.52 6.93 -83.82 -0.58 -0.06 16 12 C 0.27 2.02 15.89 -22.47 -0.36 1.66 16 13 N -0.39 -3.80 18.54 41.83 0.78 -3.02 16 14 N -0.52 -3.11 5.40 -6.96 -0.04 -3.14 16 15 H 0.42 1.84 5.49 -40.82 -0.22 1.62 16 16 C 0.11 1.25 6.41 -2.41 -0.02 1.23 16 17 C 0.07 0.77 3.35 -66.31 -0.22 0.55 16 18 H 0.06 0.59 7.96 -51.93 -0.41 0.17 16 19 N -0.66 -8.98 4.97 -106.51 -0.53 -9.51 16 20 C 0.05 0.74 6.01 -4.98 -0.03 0.71 16 21 C 0.44 9.82 7.82 -10.99 -0.09 9.74 16 22 O -0.58 -15.01 15.78 5.55 0.09 -14.92 16 23 N -0.56 -13.77 5.29 -10.96 -0.06 -13.83 16 24 C -0.30 -8.17 9.68 -14.93 -0.14 -8.32 16 25 H 0.10 2.96 7.16 -52.48 -0.38 2.59 16 26 C 0.02 0.59 5.50 -17.47 -0.10 0.49 16 27 N -0.90 -24.09 13.05 55.50 0.72 -23.37 16 28 Si 0.93 20.68 29.55 -169.99 -5.02 15.65 16 29 H -0.27 -5.95 7.11 56.52 0.40 -5.55 16 30 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 31 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 32 H 0.08 0.83 7.56 -51.93 -0.39 0.43 16 33 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 34 H 0.06 0.57 7.04 -51.93 -0.37 0.20 16 35 H 0.07 0.32 5.31 -51.93 -0.28 0.04 16 36 H 0.09 0.51 7.86 -51.93 -0.41 0.10 16 37 H 0.16 1.00 8.06 -52.49 -0.42 0.58 16 38 H 0.16 0.50 8.06 -52.48 -0.42 0.07 16 39 H 0.09 1.09 8.06 -51.93 -0.42 0.67 16 40 H 0.09 1.02 7.84 -51.93 -0.41 0.62 16 41 H 0.36 5.00 5.85 -39.29 -0.23 4.77 16 42 H 0.09 1.31 7.89 -51.92 -0.41 0.90 16 43 H 0.05 0.66 8.09 -51.93 -0.42 0.24 16 44 H 0.39 9.23 7.90 -40.82 -0.32 8.91 16 45 H 0.27 6.87 8.31 -40.82 -0.34 6.53 16 LS Contribution 383.58 15.07 5.78 5.78 Total: -1.00 -33.07 383.58 -7.33 -40.40 By element: Atomic # 1 Polarization: 16.90 SS G_CDS: -5.49 Total: 11.41 kcal Atomic # 6 Polarization: 11.24 SS G_CDS: -3.08 Total: 8.16 kcal Atomic # 7 Polarization: -59.58 SS G_CDS: 0.31 Total: -59.27 kcal Atomic # 8 Polarization: -22.30 SS G_CDS: 0.18 Total: -22.12 kcal Atomic # 14 Polarization: 20.68 SS G_CDS: -5.02 Total: 15.65 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -33.07 -7.33 -40.40 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001570337269.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.400 kcal (2) G-P(sol) polarization free energy of solvation -33.070 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.330 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.328 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.397 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.002 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds