Wall clock time and date at job start Wed Apr 1 2020 02:52:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08991 * 110.30892 * 2 1 4 4 C 1.54397 * 110.34179 * 122.28987 * 2 1 3 5 5 N 1.48141 * 104.61901 * 142.73338 * 4 2 1 6 6 C 1.34775 * 127.83638 * 140.43147 * 5 4 2 7 7 O 1.21652 * 120.00038 * 186.97653 * 6 5 4 8 8 C 1.47057 * 120.00137 * 6.98193 * 6 5 4 9 9 C 1.38006 * 125.91903 * 187.31929 * 8 6 5 10 10 C 1.39360 * 107.48243 * 179.87759 * 9 8 6 11 11 C 1.38071 * 107.51775 * 0.38405 * 10 9 8 12 12 C 1.43206 * 125.89672 * 179.72745 * 11 10 9 13 13 N 6.98620 * 100.59355 * 87.64815 * 2 1 3 14 14 N 1.36724 * 108.20998 * 359.76216 * 11 10 9 15 15 H 0.97002 * 125.68934 * 179.97438 * 14 11 10 16 16 C 1.48148 * 104.32572 * 320.41393 * 5 4 2 17 17 C 1.54283 * 110.34237 * 237.81993 * 2 1 3 18 18 H 1.09003 * 110.34401 * 122.15335 * 17 2 1 19 19 N 1.46905 * 110.34502 * 0.02562 * 17 2 1 20 20 C 1.46895 * 111.00365 * 163.87330 * 19 17 2 21 21 C 1.50698 * 109.47323 * 180.02562 * 20 19 17 22 22 O 1.21294 * 119.99844 * 0.02562 * 21 20 19 23 23 N 1.34778 * 119.99885 * 180.02562 * 21 20 19 24 24 C 1.37097 * 119.99607 * 179.97438 * 23 21 20 25 25 H 1.08005 * 120.00325 * 359.97438 * 24 23 21 26 26 C 1.38949 * 120.00165 * 179.97438 * 24 23 21 27 27 N 1.31415 * 119.99677 * 0.02562 * 26 24 23 28 28 Si 1.86802 * 120.00486 * 180.02562 * 26 24 23 29 29 H 1.48502 * 109.46652 * 0.02562 * 28 26 24 30 30 H 1.48499 * 109.46808 * 119.99944 * 28 26 24 31 31 H 1.48497 * 109.47312 * 240.00540 * 28 26 24 32 32 H 1.08993 * 109.47277 * 176.34141 * 1 2 3 33 33 H 1.09004 * 109.47046 * 296.34369 * 1 2 3 34 34 H 1.08999 * 109.46493 * 56.33682 * 1 2 3 35 35 H 1.09003 * 110.39975 * 261.52115 * 4 2 1 36 36 H 1.09000 * 110.40478 * 23.83169 * 4 2 1 37 37 H 1.07996 * 126.25930 * 0.02562 * 9 8 6 38 38 H 1.08005 * 126.24245 * 180.14429 * 10 9 8 39 39 H 1.08998 * 110.40321 * 280.80229 * 16 5 4 40 40 H 1.09000 * 110.40378 * 158.36769 * 16 5 4 41 41 H 1.00902 * 110.99631 * 39.92309 * 19 17 2 42 42 H 1.09007 * 109.46941 * 59.99907 * 20 19 17 43 43 H 1.09002 * 109.47570 * 300.00677 * 20 19 17 44 44 H 0.96993 * 120.00233 * 359.97438 * 23 21 20 45 45 H 0.96998 * 120.00103 * 180.02562 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9083 1.0222 0.0000 4 6 2.0667 -0.7734 1.2238 5 7 3.2663 -1.4826 0.7213 6 6 4.4422 -1.6682 1.3531 7 8 5.3804 -2.1645 0.7587 8 6 4.5911 -1.2710 2.7612 9 6 5.7675 -1.2719 3.4826 10 6 5.4703 -0.8255 4.7688 11 6 4.1148 -0.5668 4.8161 12 6 3.3896 -0.0936 5.9566 13 7 2.8143 0.2818 6.8613 14 7 3.5844 -0.8412 3.5862 15 1 2.6511 -0.7477 3.3387 16 6 2.8801 -1.9418 -0.6333 17 6 2.0663 -0.7704 -1.2244 18 1 2.7080 -0.1266 -1.8259 19 7 0.9524 -1.2800 -2.0353 20 6 1.4121 -1.6724 -3.3741 21 6 0.2445 -2.1881 -4.1751 22 8 -0.8620 -2.2248 -3.6796 23 7 0.4298 -2.6087 -5.4421 24 6 -0.6324 -3.0784 -6.1706 25 1 -1.6176 -3.1118 -5.7291 26 6 -0.4417 -3.5115 -7.4770 27 7 0.7570 -3.4714 -8.0141 28 14 -1.8890 -4.1509 -8.4700 29 1 -3.1210 -4.0924 -7.6429 30 1 -2.0669 -3.3117 -9.6821 31 1 -1.6299 -5.5561 -8.8742 32 1 -0.3633 -1.0255 -0.0656 33 1 -0.3633 0.4561 0.9210 34 1 -0.3632 0.5697 -0.8554 35 1 2.3400 -0.0815 2.0205 36 1 1.3226 -1.4862 1.5791 37 1 6.7410 -1.5630 3.1166 38 1 6.1715 -0.7074 5.5818 39 1 2.2638 -2.8385 -0.5691 40 1 3.7672 -2.1314 -1.2376 41 1 0.2075 -0.6018 -2.0932 42 1 2.1658 -2.4548 -3.2846 43 1 1.8443 -0.8077 -3.8779 44 1 1.3145 -2.5791 -5.8385 45 1 0.8902 -3.7734 -8.9262 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001570337269.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:52:35 Heat of formation + Delta-G solvation = 10.247752 kcal Electronic energy + Delta-G solvation = -28962.131214 eV Core-core repulsion = 24787.499945 eV Total energy + Delta-G solvation = -4174.631269 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 1.67 seconds Orbital eigenvalues (eV) -42.64764 -40.97343 -40.07432 -39.08944 -37.63213 -36.25513 -35.64540 -33.47951 -33.14353 -32.49599 -31.33561 -29.81802 -28.15557 -27.37495 -25.99407 -25.01076 -23.50944 -22.17750 -21.66683 -21.11952 -20.42891 -19.94925 -19.73945 -18.54062 -17.68227 -17.30056 -17.02548 -16.73698 -16.60526 -16.22937 -15.87896 -15.77651 -15.55959 -15.36651 -15.15207 -14.75848 -14.59455 -14.36302 -14.19193 -14.02412 -13.92681 -13.74426 -13.56404 -13.46565 -13.32987 -13.19140 -13.05211 -12.89890 -12.78606 -12.39770 -12.14158 -12.10856 -11.84979 -11.70504 -11.50578 -11.36103 -10.33405 -10.21696 -10.02705 -10.00780 -9.43358 -9.36040 -8.46399 -5.95002 -0.14901 1.06970 1.10261 1.36859 1.42389 1.56200 1.63662 1.97665 2.05816 2.17631 2.29152 2.34515 2.85016 2.92165 3.21142 3.24013 3.39502 3.50110 3.65864 3.86939 4.10158 4.20541 4.21688 4.25485 4.29592 4.33041 4.48349 4.53218 4.57529 4.70074 4.75908 4.82154 4.84866 4.88086 5.07450 5.13761 5.16916 5.41782 5.44381 5.51450 5.68290 5.87093 5.99198 6.08103 6.27647 6.30883 6.41433 6.60016 6.87729 7.13086 7.57104 8.11545 8.71139 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.024624 B = 0.001859 C = 0.001763 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1136.814207 B =15061.410073 C =15879.863617 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.093 4.093 3 H 0.102 0.898 4 C 0.094 3.906 5 N -0.620 5.620 6 C 0.605 3.395 7 O -0.560 6.560 8 C -0.009 4.009 9 C -0.114 4.114 10 C -0.110 4.110 11 C 0.089 3.911 12 C 0.299 3.701 13 N -0.433 5.433 14 N -0.510 5.510 15 H 0.431 0.569 16 C 0.116 3.884 17 C 0.076 3.924 18 H 0.062 0.938 19 N -0.665 5.665 20 C 0.060 3.940 21 C 0.440 3.560 22 O -0.620 6.620 23 N -0.574 5.574 24 C -0.332 4.332 25 H 0.080 0.920 26 C -0.014 4.014 27 N -0.921 5.921 28 Si 0.993 3.007 29 H -0.272 1.272 30 H -0.271 1.271 31 H -0.273 1.273 32 H 0.060 0.940 33 H 0.080 0.920 34 H 0.055 0.945 35 H 0.097 0.903 36 H 0.097 0.903 37 H 0.167 0.833 38 H 0.186 0.814 39 H 0.080 0.920 40 H 0.073 0.927 41 H 0.356 0.644 42 H 0.099 0.901 43 H 0.067 0.933 44 H 0.396 0.604 45 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.742 9.144 23.058 26.650 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.112 4.112 3 H 0.120 0.880 4 C -0.029 4.029 5 N -0.353 5.353 6 C 0.395 3.605 7 O -0.438 6.438 8 C -0.127 4.127 9 C -0.140 4.140 10 C -0.138 4.138 11 C -0.029 4.029 12 C -0.016 4.016 13 N -0.110 5.110 14 N -0.113 5.113 15 H 0.277 0.723 16 C -0.008 4.008 17 C -0.035 4.035 18 H 0.080 0.920 19 N -0.302 5.302 20 C -0.072 4.072 21 C 0.227 3.773 22 O -0.506 6.506 23 N -0.212 5.212 24 C -0.461 4.461 25 H 0.098 0.902 26 C -0.214 4.214 27 N -0.562 5.562 28 Si 0.816 3.184 29 H -0.197 1.197 30 H -0.197 1.197 31 H -0.198 1.198 32 H 0.080 0.920 33 H 0.099 0.901 34 H 0.074 0.926 35 H 0.115 0.885 36 H 0.115 0.885 37 H 0.184 0.816 38 H 0.203 0.797 39 H 0.098 0.902 40 H 0.092 0.908 41 H 0.179 0.821 42 H 0.118 0.882 43 H 0.084 0.916 44 H 0.229 0.771 45 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 8.601 8.744 24.485 27.385 hybrid contribution -0.353 0.207 -2.078 2.118 sum 8.248 8.951 22.407 25.500 Atomic orbital electron populations 1.21716 0.92814 1.03003 1.02602 1.22167 0.97345 0.99515 0.92217 0.88003 1.22948 0.86441 0.96057 0.97434 1.48840 1.12952 1.55588 1.17952 1.16947 0.80852 0.78090 0.84594 1.90865 1.39362 1.46657 1.66954 1.20284 0.90023 1.11717 0.90684 1.21508 0.97512 1.02140 0.92863 1.21598 0.91983 1.01782 0.98405 1.15625 0.92291 1.12587 0.82427 1.24270 0.92629 0.92431 0.92264 1.81392 1.07534 1.11046 1.11036 1.42527 1.11087 1.49553 1.08145 0.72278 1.22373 0.98511 0.97564 0.82314 1.22415 0.91909 0.94417 0.94726 0.92045 1.60280 1.10303 1.47502 1.12080 1.21603 0.94813 1.01116 0.89684 1.20810 0.90889 0.83030 0.82528 1.90489 1.27814 1.61148 1.71194 1.41954 1.11089 1.56442 1.11679 1.19706 0.90684 1.40233 0.95512 0.90154 1.26042 1.00385 0.97326 0.97634 1.69681 1.22500 1.47785 1.16215 0.84873 0.77639 0.78063 0.77783 1.19677 1.19667 1.19802 0.92045 0.90142 0.92598 0.88521 0.88499 0.81560 0.79718 0.90201 0.90813 0.82070 0.88246 0.91552 0.77057 0.91363 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.04 7.81 71.98 0.56 -1.48 16 2 C -0.09 -1.22 3.66 -9.88 -0.04 -1.26 16 3 H 0.10 1.04 8.14 -2.39 -0.02 1.02 16 4 C 0.09 1.01 5.35 86.54 0.46 1.48 16 5 N -0.62 -10.92 3.32 -812.22 -2.69 -13.62 16 6 C 0.60 12.42 7.88 86.56 0.68 13.10 16 7 O -0.56 -16.02 17.13 -4.20 -0.07 -16.09 16 8 C -0.01 -0.13 6.84 40.58 0.28 0.15 16 9 C -0.11 -1.35 10.61 22.48 0.24 -1.11 16 10 C -0.11 -0.87 10.80 22.50 0.24 -0.63 16 11 C 0.09 0.84 6.93 39.59 0.27 1.12 16 12 C 0.30 3.72 15.89 88.33 1.40 5.12 16 13 N -0.43 -7.62 18.54 19.00 0.35 -7.27 16 14 N -0.51 -4.79 5.40 -175.93 -0.95 -5.74 16 15 H 0.43 2.50 5.49 -92.71 -0.51 1.99 16 16 C 0.12 2.47 6.41 86.53 0.55 3.02 16 17 C 0.08 1.49 3.35 45.82 0.15 1.64 16 18 H 0.06 1.18 7.96 -2.39 -0.02 1.16 16 19 N -0.67 -17.83 4.97 -490.88 -2.44 -20.27 16 20 C 0.06 1.91 6.01 85.56 0.51 2.43 16 21 C 0.44 19.98 7.82 87.66 0.69 20.67 16 22 O -0.62 -32.64 15.78 -3.07 -0.05 -32.69 16 23 N -0.57 -28.80 5.29 -306.98 -1.62 -30.42 16 24 C -0.33 -18.53 9.68 84.04 0.81 -17.72 16 25 H 0.08 4.78 7.16 -2.91 -0.02 4.76 16 26 C -0.01 -0.75 5.50 84.93 0.47 -0.28 16 27 N -0.92 -49.35 13.05 21.66 0.28 -49.07 16 28 Si 0.99 42.49 29.55 68.60 2.03 44.52 16 29 H -0.27 -11.73 7.11 99.48 0.71 -11.02 16 30 H -0.27 -11.12 7.11 99.48 0.71 -10.41 16 31 H -0.27 -11.25 7.11 99.48 0.71 -10.54 16 32 H 0.06 1.17 7.56 -2.39 -0.02 1.15 16 33 H 0.08 0.76 8.14 -2.38 -0.02 0.74 16 34 H 0.06 0.91 7.04 -2.39 -0.02 0.89 16 35 H 0.10 0.55 5.31 -2.39 -0.01 0.54 16 36 H 0.10 0.90 7.86 -2.39 -0.02 0.88 16 37 H 0.17 1.81 8.06 -2.91 -0.02 1.79 16 38 H 0.19 0.46 8.06 -2.91 -0.02 0.44 16 39 H 0.08 1.91 8.06 -2.39 -0.02 1.89 16 40 H 0.07 1.77 7.84 -2.39 -0.02 1.75 16 41 H 0.36 9.83 5.85 -89.69 -0.52 9.31 16 42 H 0.10 2.94 7.89 -2.38 -0.02 2.92 16 43 H 0.07 1.86 8.09 -2.39 -0.02 1.84 16 44 H 0.40 18.97 7.90 -92.71 -0.73 18.24 16 45 H 0.28 13.89 8.31 -92.71 -0.77 13.12 16 Total: -1.00 -73.40 383.58 1.45 -71.96 By element: Atomic # 1 Polarization: 33.13 SS G_CDS: -0.68 Total: 32.45 kcal Atomic # 6 Polarization: 18.95 SS G_CDS: 7.30 Total: 26.25 kcal Atomic # 7 Polarization: -119.31 SS G_CDS: -7.07 Total: -126.38 kcal Atomic # 8 Polarization: -48.66 SS G_CDS: -0.12 Total: -48.78 kcal Atomic # 14 Polarization: 42.49 SS G_CDS: 2.03 Total: 44.52 kcal Total: -73.40 1.45 -71.96 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001570337269.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.204 kcal (2) G-P(sol) polarization free energy of solvation -73.404 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.800 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.447 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.956 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.248 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.67 seconds