Wall clock time and date at job start Wed Apr 1 2020 02:52:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09004 * 110.77900 * 2 1 4 4 C 1.54317 * 110.72232 * 236.75381 * 2 1 3 5 5 N 1.47026 * 107.27374 * 263.83101 * 4 2 1 6 6 C 1.34776 * 125.64934 * 181.02383 * 5 4 2 7 7 O 1.21649 * 119.99844 * 180.02562 * 6 5 4 8 8 C 1.47056 * 120.00136 * 0.02562 * 6 5 4 9 9 C 1.38002 * 125.92090 * 179.97438 * 8 6 5 10 10 C 1.39356 * 107.48678 * 180.24928 * 9 8 6 11 11 C 1.38088 * 107.51080 * 359.62842 * 10 9 8 12 12 C 1.43205 * 125.88884 * 180.11699 * 11 10 9 13 13 N 6.97715 * 105.35349 * 268.90669 * 2 1 3 14 14 N 1.36717 * 108.21221 * 0.37208 * 11 10 9 15 15 H 0.96998 * 125.68299 * 179.78312 * 14 11 10 16 16 C 1.47429 * 108.70104 * 1.28646 * 5 4 2 17 17 C 1.55131 * 104.72135 * 335.55047 * 16 5 4 18 18 H 1.08993 * 111.22712 * 279.17857 * 17 16 5 19 19 N 1.46897 * 110.90467 * 155.27302 * 17 16 5 20 20 C 1.46904 * 111.00014 * 92.97944 * 19 17 16 21 21 C 1.50696 * 109.47208 * 180.02562 * 20 19 17 22 22 O 1.21299 * 120.00308 * 359.97438 * 21 20 19 23 23 N 1.34780 * 119.99762 * 179.97438 * 21 20 19 24 24 C 1.37095 * 119.99559 * 179.97438 * 23 21 20 25 25 H 1.07998 * 120.00536 * 0.02562 * 24 23 21 26 26 C 1.38957 * 119.99822 * 180.02562 * 24 23 21 27 27 N 1.31415 * 119.99499 * 0.02562 * 26 24 23 28 28 Si 1.86796 * 120.00179 * 179.97438 * 26 24 23 29 29 H 1.48502 * 109.46762 * 59.99920 * 28 26 24 30 30 H 1.48497 * 109.47218 * 179.97438 * 28 26 24 31 31 H 1.48498 * 109.47481 * 300.00184 * 28 26 24 32 32 H 1.08998 * 109.47149 * 181.78960 * 1 2 3 33 33 H 1.09000 * 109.47185 * 301.79211 * 1 2 3 34 34 H 1.08998 * 109.46994 * 61.78959 * 1 2 3 35 35 H 1.09006 * 109.88235 * 144.41371 * 4 2 1 36 36 H 1.09001 * 109.88410 * 23.24825 * 4 2 1 37 37 H 1.08002 * 126.25328 * 359.97438 * 9 8 6 38 38 H 1.07999 * 126.24445 * 179.75081 * 10 9 8 39 39 H 1.08993 * 110.36782 * 94.48375 * 16 5 4 40 40 H 1.09000 * 110.36201 * 216.80965 * 16 5 4 41 41 H 1.00903 * 111.00367 * 329.02545 * 19 17 16 42 42 H 1.08998 * 109.46581 * 299.99954 * 20 19 17 43 43 H 1.08997 * 109.47144 * 59.99582 * 20 19 17 44 44 H 0.96992 * 120.00353 * 0.02562 * 23 21 20 45 45 H 0.97002 * 119.99417 * 180.02562 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9167 1.0191 0.0000 4 6 2.0760 -0.7913 -1.2071 5 7 2.3716 -2.1532 -0.7387 6 6 2.8850 -3.1479 -1.4893 7 8 3.0891 -4.2403 -0.9943 8 6 3.1985 -2.9128 -2.9067 9 6 3.7256 -3.8388 -3.7837 10 6 3.8731 -3.2096 -5.0184 11 6 3.4257 -1.9107 -4.8788 12 6 3.3988 -0.9168 -5.9094 13 7 3.3773 -0.1284 -6.7269 14 7 3.0182 -1.7358 -3.5856 15 1 2.6608 -0.9155 -3.2110 16 6 2.0074 -2.2524 0.6865 17 6 2.0790 -0.7953 1.2140 18 1 3.1058 -0.5067 1.4380 19 7 1.2172 -0.6210 2.3908 20 6 1.9719 -0.8367 3.6325 21 6 1.0569 -0.6505 4.8153 22 8 -0.1092 -0.3655 4.6411 23 7 1.5343 -0.8005 6.0668 24 6 0.7020 -0.6305 7.1428 25 1 -0.3363 -0.3768 6.9877 26 6 1.1942 -0.7846 8.4331 27 7 2.4577 -1.0929 8.6218 28 14 0.0603 -0.5523 9.8993 29 1 -1.0554 -1.5293 9.8218 30 1 0.8231 -0.7712 11.1545 31 1 -0.4883 0.8275 9.8872 32 1 -0.3633 -1.0271 0.0321 33 1 -0.3633 0.5414 0.8735 34 1 -0.3633 0.4858 -0.9056 35 1 2.9869 -0.3208 -1.5774 36 1 1.3263 -0.8257 -1.9976 37 1 3.9816 -4.8626 -3.5539 38 1 4.2639 -3.6569 -5.9204 39 1 0.9974 -2.6479 0.7933 40 1 2.7208 -2.8830 1.2172 41 1 0.4147 -1.2309 2.3449 42 1 2.3750 -1.8494 3.6414 43 1 2.7906 -0.1194 3.6894 44 1 2.4668 -1.0280 6.2062 45 1 2.8012 -1.2008 9.5225 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001570337270.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:52:51 Heat of formation + Delta-G solvation = 23.286559 kcal Electronic energy + Delta-G solvation = -28916.343852 eV Core-core repulsion = 24742.277989 eV Total energy + Delta-G solvation = -4174.065864 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 3.72 seconds Orbital eigenvalues (eV) -42.11901 -40.29015 -38.59078 -37.96804 -36.99803 -35.02372 -33.89563 -32.55799 -31.93148 -31.26253 -30.64589 -28.94447 -27.12733 -26.38566 -24.74821 -23.81532 -22.74960 -21.56386 -21.10982 -20.13056 -19.43435 -18.98414 -18.03444 -17.77683 -16.66462 -16.25050 -15.98366 -15.70407 -15.33758 -15.23514 -14.69516 -14.54857 -14.44777 -14.12366 -14.00553 -13.90495 -13.79731 -13.50530 -13.44268 -13.25056 -13.11989 -12.97873 -12.78338 -12.74715 -12.31136 -12.25120 -11.79301 -11.57133 -11.41351 -11.13049 -11.03707 -10.97554 -10.53783 -10.47447 -10.25471 -9.75268 -9.54568 -9.24091 -8.85295 -8.57322 -8.21947 -8.01348 -6.45931 -3.87050 0.42400 1.63810 1.65295 2.34189 2.54536 2.85050 2.87038 3.17159 3.23620 3.27561 3.39017 3.81504 3.83976 3.93834 4.08223 4.20571 4.36501 4.46964 4.57683 4.68023 4.78286 4.82457 4.87543 5.06779 5.20771 5.25779 5.29913 5.37949 5.44413 5.47865 5.54670 5.59475 5.73587 5.79161 5.87612 5.93505 5.97101 6.15624 6.18611 6.26478 6.46223 6.83012 6.95251 7.00858 7.43222 7.51001 7.62688 8.00803 8.55582 9.12982 9.48769 9.99481 10.71487 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.026094 B = 0.001811 C = 0.001739 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1072.768364 B =15457.972680 C =16100.675957 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.088 4.088 3 H 0.097 0.903 4 C 0.085 3.915 5 N -0.612 5.612 6 C 0.600 3.400 7 O -0.515 6.515 8 C 0.002 3.998 9 C -0.113 4.113 10 C -0.123 4.123 11 C 0.085 3.915 12 C 0.274 3.726 13 N -0.394 5.394 14 N -0.519 5.519 15 H 0.424 0.576 16 C 0.078 3.922 17 C 0.081 3.919 18 H 0.096 0.904 19 N -0.648 5.648 20 C 0.047 3.953 21 C 0.439 3.561 22 O -0.584 6.584 23 N -0.561 5.561 24 C -0.301 4.301 25 H 0.103 0.897 26 C 0.023 3.977 27 N -0.900 5.900 28 Si 0.931 3.069 29 H -0.274 1.274 30 H -0.284 1.284 31 H -0.273 1.273 32 H 0.052 0.948 33 H 0.084 0.916 34 H 0.051 0.949 35 H 0.070 0.930 36 H 0.072 0.928 37 H 0.163 0.837 38 H 0.159 0.841 39 H 0.076 0.924 40 H 0.085 0.915 41 H 0.354 0.646 42 H 0.047 0.953 43 H 0.088 0.912 44 H 0.392 0.608 45 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.572 -2.143 -24.715 25.226 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.107 4.107 3 H 0.116 0.884 4 C -0.039 4.039 5 N -0.346 5.346 6 C 0.388 3.612 7 O -0.390 6.390 8 C -0.116 4.116 9 C -0.138 4.138 10 C -0.151 4.151 11 C -0.033 4.033 12 C -0.042 4.042 13 N -0.071 5.071 14 N -0.121 5.121 15 H 0.268 0.732 16 C -0.047 4.047 17 C -0.032 4.032 18 H 0.115 0.885 19 N -0.279 5.279 20 C -0.085 4.085 21 C 0.224 3.776 22 O -0.469 6.469 23 N -0.197 5.197 24 C -0.431 4.431 25 H 0.121 0.879 26 C -0.179 4.179 27 N -0.541 5.541 28 Si 0.758 3.242 29 H -0.199 1.199 30 H -0.210 1.210 31 H -0.199 1.199 32 H 0.071 0.929 33 H 0.103 0.897 34 H 0.070 0.930 35 H 0.088 0.912 36 H 0.090 0.910 37 H 0.180 0.820 38 H 0.177 0.823 39 H 0.094 0.906 40 H 0.103 0.897 41 H 0.176 0.824 42 H 0.065 0.935 43 H 0.106 0.894 44 H 0.226 0.774 45 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 3.981 -0.575 -25.504 25.819 hybrid contribution 0.089 -0.817 1.279 1.521 sum 4.070 -1.392 -24.224 24.603 Atomic orbital electron populations 1.21725 0.93041 1.02328 1.02873 1.22191 0.97636 0.99212 0.91672 0.88445 1.22503 0.99653 0.82767 0.98986 1.48270 1.63058 1.11211 1.12106 1.16731 0.77561 0.83563 0.83350 1.90895 1.53273 1.23032 1.71796 1.20604 1.11005 0.86851 0.93119 1.21305 1.01610 0.99836 0.91096 1.21305 1.03609 0.90765 0.99412 1.15643 1.12193 0.92918 0.82520 1.24316 0.94043 0.92507 0.93353 1.81354 1.08770 1.07858 1.09080 1.42619 1.48593 1.12931 1.07943 0.73190 1.23272 1.01582 0.99744 0.80054 1.22880 0.97930 0.91492 0.90861 0.88546 1.60141 1.08754 1.59902 0.99133 1.21775 0.96712 1.00294 0.89759 1.19734 0.88910 0.84998 0.83921 1.90528 1.17846 1.53266 1.85244 1.41850 1.12595 1.61015 1.04275 1.19652 0.94846 1.44862 0.83742 0.87930 1.25275 0.96461 0.97104 0.99025 1.69604 1.13350 1.47854 1.23328 0.85908 0.79495 0.79081 0.79683 1.19893 1.20958 1.19872 0.92897 0.89701 0.92994 0.91235 0.91008 0.81967 0.82295 0.90555 0.89704 0.82437 0.93498 0.89356 0.77428 0.91758 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.20 8.27 37.16 0.31 -0.89 16 2 C -0.09 -0.66 3.56 -88.78 -0.32 -0.98 16 3 H 0.10 0.66 8.14 -51.93 -0.42 0.24 16 4 C 0.08 0.51 4.68 -3.07 -0.01 0.50 16 5 N -0.61 -5.43 3.33 -171.78 -0.57 -6.00 16 6 C 0.60 6.24 7.83 -12.69 -0.10 6.14 16 7 O -0.52 -7.21 17.13 5.23 0.09 -7.12 16 8 C 0.00 0.02 6.88 -82.04 -0.56 -0.55 16 9 C -0.11 -0.77 10.60 -39.25 -0.42 -1.19 16 10 C -0.12 -0.66 10.80 -39.22 -0.42 -1.08 16 11 C 0.08 0.51 6.93 -83.82 -0.58 -0.07 16 12 C 0.27 1.98 15.89 -22.47 -0.36 1.63 16 13 N -0.39 -3.74 18.54 41.83 0.78 -2.96 16 14 N -0.52 -3.02 5.64 -6.96 -0.04 -3.06 16 15 H 0.42 1.75 4.87 -40.82 -0.20 1.55 16 16 C 0.08 0.78 6.18 -2.41 -0.01 0.76 16 17 C 0.08 0.78 3.19 -65.44 -0.21 0.57 16 18 H 0.10 0.90 7.83 -51.93 -0.41 0.50 16 19 N -0.65 -8.69 4.95 -105.60 -0.52 -9.21 16 20 C 0.05 0.74 6.03 -4.98 -0.03 0.71 16 21 C 0.44 9.75 7.82 -10.99 -0.09 9.66 16 22 O -0.58 -15.01 15.78 5.54 0.09 -14.93 16 23 N -0.56 -13.68 5.29 -10.96 -0.06 -13.74 16 24 C -0.30 -8.20 9.68 -14.93 -0.14 -8.34 16 25 H 0.10 2.92 7.16 -52.49 -0.38 2.55 16 26 C 0.02 0.61 5.50 -17.46 -0.10 0.51 16 27 N -0.90 -24.01 13.05 55.50 0.72 -23.29 16 28 Si 0.93 20.67 29.55 -169.99 -5.02 15.64 16 29 H -0.27 -6.04 7.11 56.52 0.40 -5.63 16 30 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 31 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 32 H 0.05 0.47 7.42 -51.93 -0.39 0.08 16 33 H 0.08 0.92 7.65 -51.93 -0.40 0.52 16 34 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 35 H 0.07 0.30 7.08 -51.93 -0.37 -0.07 16 36 H 0.07 0.34 6.93 -51.93 -0.36 -0.02 16 37 H 0.16 1.00 8.06 -52.49 -0.42 0.58 16 38 H 0.16 0.49 8.06 -52.49 -0.42 0.06 16 39 H 0.08 0.80 7.31 -51.93 -0.38 0.42 16 40 H 0.08 0.95 8.03 -51.93 -0.42 0.53 16 41 H 0.35 5.03 7.52 -39.29 -0.30 4.73 16 42 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 43 H 0.09 1.27 8.09 -51.93 -0.42 0.85 16 44 H 0.39 9.16 7.90 -40.82 -0.32 8.84 16 45 H 0.27 6.91 8.31 -40.82 -0.34 6.57 16 LS Contribution 385.05 15.07 5.80 5.80 Total: -1.00 -33.06 385.05 -7.35 -40.42 By element: Atomic # 1 Polarization: 16.64 SS G_CDS: -5.57 Total: 11.06 kcal Atomic # 6 Polarization: 10.43 SS G_CDS: -3.05 Total: 7.39 kcal Atomic # 7 Polarization: -58.57 SS G_CDS: 0.31 Total: -58.26 kcal Atomic # 8 Polarization: -22.23 SS G_CDS: 0.18 Total: -22.05 kcal Atomic # 14 Polarization: 20.67 SS G_CDS: -5.02 Total: 15.64 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -33.06 -7.35 -40.42 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001570337270.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.702 kcal (2) G-P(sol) polarization free energy of solvation -33.061 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.641 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.355 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.415 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.287 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.72 seconds