Wall clock time and date at job start Wed Apr 1 2020 02:52:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09004 * 110.77900 * 2 1 4 4 C 1.54317 * 110.72232 * 236.75381 * 2 1 3 5 5 N 1.47026 * 107.27374 * 263.83101 * 4 2 1 6 6 C 1.34776 * 125.64934 * 181.02383 * 5 4 2 7 7 O 1.21649 * 119.99844 * 180.02562 * 6 5 4 8 8 C 1.47056 * 120.00136 * 0.02562 * 6 5 4 9 9 C 1.38002 * 125.92090 * 179.97438 * 8 6 5 10 10 C 1.39356 * 107.48678 * 180.24928 * 9 8 6 11 11 C 1.38088 * 107.51080 * 359.62842 * 10 9 8 12 12 C 1.43205 * 125.88884 * 180.11699 * 11 10 9 13 13 N 6.97715 * 105.35349 * 268.90669 * 2 1 3 14 14 N 1.36717 * 108.21221 * 0.37208 * 11 10 9 15 15 H 0.96998 * 125.68299 * 179.78312 * 14 11 10 16 16 C 1.47429 * 108.70104 * 1.28646 * 5 4 2 17 17 C 1.55131 * 104.72135 * 335.55047 * 16 5 4 18 18 H 1.08993 * 111.22712 * 279.17857 * 17 16 5 19 19 N 1.46897 * 110.90467 * 155.27302 * 17 16 5 20 20 C 1.46904 * 111.00014 * 92.97944 * 19 17 16 21 21 C 1.50696 * 109.47208 * 180.02562 * 20 19 17 22 22 O 1.21299 * 120.00308 * 359.97438 * 21 20 19 23 23 N 1.34780 * 119.99762 * 179.97438 * 21 20 19 24 24 C 1.37095 * 119.99559 * 179.97438 * 23 21 20 25 25 H 1.07998 * 120.00536 * 0.02562 * 24 23 21 26 26 C 1.38957 * 119.99822 * 180.02562 * 24 23 21 27 27 N 1.31415 * 119.99499 * 0.02562 * 26 24 23 28 28 Si 1.86796 * 120.00179 * 179.97438 * 26 24 23 29 29 H 1.48502 * 109.46762 * 59.99920 * 28 26 24 30 30 H 1.48497 * 109.47218 * 179.97438 * 28 26 24 31 31 H 1.48498 * 109.47481 * 300.00184 * 28 26 24 32 32 H 1.08998 * 109.47149 * 181.78960 * 1 2 3 33 33 H 1.09000 * 109.47185 * 301.79211 * 1 2 3 34 34 H 1.08998 * 109.46994 * 61.78959 * 1 2 3 35 35 H 1.09006 * 109.88235 * 144.41371 * 4 2 1 36 36 H 1.09001 * 109.88410 * 23.24825 * 4 2 1 37 37 H 1.08002 * 126.25328 * 359.97438 * 9 8 6 38 38 H 1.07999 * 126.24445 * 179.75081 * 10 9 8 39 39 H 1.08993 * 110.36782 * 94.48375 * 16 5 4 40 40 H 1.09000 * 110.36201 * 216.80965 * 16 5 4 41 41 H 1.00903 * 111.00367 * 329.02545 * 19 17 16 42 42 H 1.08998 * 109.46581 * 299.99954 * 20 19 17 43 43 H 1.08997 * 109.47144 * 59.99582 * 20 19 17 44 44 H 0.96992 * 120.00353 * 0.02562 * 23 21 20 45 45 H 0.97002 * 119.99417 * 180.02562 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9167 1.0191 0.0000 4 6 2.0760 -0.7913 -1.2071 5 7 2.3716 -2.1532 -0.7387 6 6 2.8850 -3.1479 -1.4893 7 8 3.0891 -4.2403 -0.9943 8 6 3.1985 -2.9128 -2.9067 9 6 3.7256 -3.8388 -3.7837 10 6 3.8731 -3.2096 -5.0184 11 6 3.4257 -1.9107 -4.8788 12 6 3.3988 -0.9168 -5.9094 13 7 3.3773 -0.1284 -6.7269 14 7 3.0182 -1.7358 -3.5856 15 1 2.6608 -0.9155 -3.2110 16 6 2.0074 -2.2524 0.6865 17 6 2.0790 -0.7953 1.2140 18 1 3.1058 -0.5067 1.4380 19 7 1.2172 -0.6210 2.3908 20 6 1.9719 -0.8367 3.6325 21 6 1.0569 -0.6505 4.8153 22 8 -0.1092 -0.3655 4.6411 23 7 1.5343 -0.8005 6.0668 24 6 0.7020 -0.6305 7.1428 25 1 -0.3363 -0.3768 6.9877 26 6 1.1942 -0.7846 8.4331 27 7 2.4577 -1.0929 8.6218 28 14 0.0603 -0.5523 9.8993 29 1 -1.0554 -1.5293 9.8218 30 1 0.8231 -0.7712 11.1545 31 1 -0.4883 0.8275 9.8872 32 1 -0.3633 -1.0271 0.0321 33 1 -0.3633 0.5414 0.8735 34 1 -0.3633 0.4858 -0.9056 35 1 2.9869 -0.3208 -1.5774 36 1 1.3263 -0.8257 -1.9976 37 1 3.9816 -4.8626 -3.5539 38 1 4.2639 -3.6569 -5.9204 39 1 0.9974 -2.6479 0.7933 40 1 2.7208 -2.8830 1.2172 41 1 0.4147 -1.2309 2.3449 42 1 2.3750 -1.8494 3.6414 43 1 2.7906 -0.1194 3.6894 44 1 2.4668 -1.0280 6.2062 45 1 2.8012 -1.2008 9.5225 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001570337270.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:52:40 Heat of formation + Delta-G solvation = -0.702490 kcal Electronic energy + Delta-G solvation = -28917.384096 eV Core-core repulsion = 24742.277989 eV Total energy + Delta-G solvation = -4175.106107 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 5.53 seconds Orbital eigenvalues (eV) -42.67645 -41.03362 -40.08217 -39.08180 -37.63176 -36.26547 -35.63385 -33.45256 -33.16396 -32.45391 -31.27348 -29.86734 -27.89487 -27.68534 -26.01163 -24.95073 -23.43106 -22.11044 -21.64388 -21.15849 -20.87721 -19.93602 -19.61321 -18.59545 -17.68082 -17.40572 -17.00946 -16.71148 -16.37659 -16.15629 -15.95479 -15.75553 -15.47471 -15.16484 -15.11759 -14.60881 -14.53393 -14.34503 -14.24041 -14.13445 -14.02593 -13.72435 -13.61469 -13.58280 -13.43266 -13.31157 -13.14445 -13.05408 -12.83587 -12.42438 -12.19663 -12.12487 -11.86285 -11.66329 -11.49027 -11.35792 -10.33228 -10.22626 -10.00893 -9.96928 -9.43231 -9.34594 -8.45981 -5.94535 -0.15217 1.07499 1.09641 1.40243 1.42445 1.52980 1.64717 1.98869 2.06585 2.17276 2.29586 2.34560 2.82751 2.92502 3.21134 3.23223 3.38193 3.53588 3.70579 3.90453 4.02147 4.08448 4.13325 4.21737 4.29383 4.33523 4.46052 4.56325 4.59714 4.64661 4.77176 4.81450 4.83104 4.88165 5.09821 5.14838 5.27012 5.41579 5.43985 5.53690 5.67752 5.86310 6.00582 6.07523 6.24761 6.29203 6.30800 6.60514 6.86833 7.13322 7.57442 8.12268 8.71007 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.026094 B = 0.001811 C = 0.001739 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1072.768364 B =15457.972680 C =16100.675957 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.081 4.081 3 H 0.114 0.886 4 C 0.084 3.916 5 N -0.609 5.609 6 C 0.597 3.403 7 O -0.562 6.562 8 C -0.009 4.009 9 C -0.115 4.115 10 C -0.111 4.111 11 C 0.089 3.911 12 C 0.299 3.701 13 N -0.432 5.432 14 N -0.509 5.509 15 H 0.432 0.568 16 C 0.080 3.920 17 C 0.083 3.917 18 H 0.107 0.893 19 N -0.655 5.655 20 C 0.062 3.938 21 C 0.438 3.562 22 O -0.622 6.622 23 N -0.573 5.573 24 C -0.334 4.334 25 H 0.080 0.920 26 C -0.013 4.013 27 N -0.920 5.920 28 Si 0.992 3.008 29 H -0.272 1.272 30 H -0.272 1.272 31 H -0.272 1.272 32 H 0.043 0.957 33 H 0.057 0.943 34 H 0.072 0.928 35 H 0.096 0.904 36 H 0.092 0.908 37 H 0.165 0.835 38 H 0.185 0.815 39 H 0.068 0.932 40 H 0.070 0.930 41 H 0.348 0.652 42 H 0.065 0.935 43 H 0.109 0.891 44 H 0.396 0.604 45 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.405 -1.593 -26.410 27.004 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.100 4.100 3 H 0.132 0.868 4 C -0.038 4.038 5 N -0.342 5.342 6 C 0.388 3.612 7 O -0.440 6.440 8 C -0.128 4.128 9 C -0.142 4.142 10 C -0.139 4.139 11 C -0.029 4.029 12 C -0.016 4.016 13 N -0.110 5.110 14 N -0.112 5.112 15 H 0.277 0.723 16 C -0.045 4.045 17 C -0.028 4.028 18 H 0.125 0.875 19 N -0.286 5.286 20 C -0.070 4.070 21 C 0.225 3.775 22 O -0.508 6.508 23 N -0.211 5.211 24 C -0.464 4.464 25 H 0.098 0.902 26 C -0.213 4.213 27 N -0.561 5.561 28 Si 0.816 3.184 29 H -0.198 1.198 30 H -0.196 1.196 31 H -0.197 1.197 32 H 0.062 0.938 33 H 0.076 0.924 34 H 0.091 0.909 35 H 0.114 0.886 36 H 0.110 0.890 37 H 0.183 0.817 38 H 0.202 0.798 39 H 0.086 0.914 40 H 0.088 0.912 41 H 0.168 0.832 42 H 0.083 0.917 43 H 0.127 0.873 44 H 0.230 0.770 45 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 4.826 0.017 -27.223 27.647 hybrid contribution -0.191 -0.999 1.722 2.000 sum 4.635 -0.982 -25.501 25.937 Atomic orbital electron populations 1.21676 0.93803 1.01566 1.02640 1.22178 0.96917 0.99949 0.90943 0.86786 1.22692 1.01482 0.80963 0.98713 1.48287 1.62313 1.12161 1.11478 1.17037 0.76948 0.83051 0.84212 1.90867 1.55430 1.24854 1.72883 1.20271 1.12459 0.87965 0.92070 1.21497 1.01146 1.00036 0.91500 1.21595 1.02442 0.90167 0.99678 1.15612 1.12203 0.92834 0.82245 1.24261 0.92847 0.91761 0.92720 1.81394 1.10177 1.09076 1.10323 1.42487 1.48333 1.12684 1.07650 0.72255 1.23117 1.00735 0.99634 0.81007 1.22943 0.97966 0.91771 0.90161 0.87456 1.60168 1.09018 1.59991 0.99421 1.21632 0.95567 1.01930 0.87918 1.20861 0.89228 0.82532 0.84834 1.90498 1.20007 1.54333 1.86010 1.41932 1.12517 1.61941 1.04677 1.19629 0.94537 1.46776 0.85418 0.90229 1.26028 0.97919 0.96353 1.00982 1.69667 1.14345 1.47949 1.24114 0.85002 0.77775 0.78872 0.76785 1.19766 1.19625 1.19691 0.93775 0.92398 0.90905 0.88572 0.89024 0.81724 0.79794 0.91378 0.91150 0.83200 0.91698 0.87262 0.76995 0.91343 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.16 8.27 71.98 0.60 -1.56 16 2 C -0.08 -1.02 3.56 -9.61 -0.03 -1.05 16 3 H 0.11 1.15 8.14 -2.38 -0.02 1.14 16 4 C 0.08 0.77 4.68 86.73 0.41 1.17 16 5 N -0.61 -9.93 3.33 -815.62 -2.71 -12.64 16 6 C 0.60 11.89 7.83 86.56 0.68 12.57 16 7 O -0.56 -15.91 17.13 -4.19 -0.07 -15.98 16 8 C -0.01 -0.13 6.88 40.58 0.28 0.15 16 9 C -0.12 -1.36 10.60 22.48 0.24 -1.12 16 10 C -0.11 -0.87 10.80 22.50 0.24 -0.63 16 11 C 0.09 0.82 6.93 39.59 0.27 1.09 16 12 C 0.30 3.60 15.89 88.33 1.40 5.00 16 13 N -0.43 -7.44 18.54 19.00 0.35 -7.09 16 14 N -0.51 -4.46 5.64 -175.92 -0.99 -5.45 16 15 H 0.43 2.09 4.87 -92.71 -0.45 1.64 16 16 C 0.08 1.56 6.18 86.93 0.54 2.09 16 17 C 0.08 1.49 3.19 46.39 0.15 1.64 16 18 H 0.11 1.75 7.83 -2.39 -0.02 1.73 16 19 N -0.65 -17.23 4.95 -488.01 -2.42 -19.65 16 20 C 0.06 1.90 6.03 85.56 0.52 2.41 16 21 C 0.44 19.77 7.82 87.66 0.69 20.45 16 22 O -0.62 -32.87 15.78 -3.09 -0.05 -32.92 16 23 N -0.57 -28.56 5.29 -306.97 -1.62 -30.19 16 24 C -0.33 -18.63 9.68 84.04 0.81 -17.82 16 25 H 0.08 4.72 7.16 -2.91 -0.02 4.70 16 26 C -0.01 -0.68 5.50 84.93 0.47 -0.22 16 27 N -0.92 -49.08 13.05 21.67 0.28 -48.80 16 28 Si 0.99 42.44 29.55 68.60 2.03 44.46 16 29 H -0.27 -11.53 7.11 99.48 0.71 -10.82 16 30 H -0.27 -10.99 7.11 99.48 0.71 -10.28 16 31 H -0.27 -11.48 7.11 99.48 0.71 -10.77 16 32 H 0.04 0.75 7.42 -2.39 -0.02 0.73 16 33 H 0.06 1.24 7.65 -2.39 -0.02 1.22 16 34 H 0.07 0.81 8.14 -2.39 -0.02 0.80 16 35 H 0.10 0.44 7.08 -2.38 -0.02 0.42 16 36 H 0.09 0.54 6.93 -2.39 -0.02 0.52 16 37 H 0.17 1.83 8.06 -2.91 -0.02 1.80 16 38 H 0.18 0.46 8.06 -2.91 -0.02 0.44 16 39 H 0.07 1.44 7.31 -2.39 -0.02 1.42 16 40 H 0.07 1.58 8.03 -2.39 -0.02 1.56 16 41 H 0.35 10.02 7.52 -89.69 -0.67 9.34 16 42 H 0.07 1.79 8.14 -2.39 -0.02 1.77 16 43 H 0.11 2.95 8.09 -2.39 -0.02 2.93 16 44 H 0.40 18.77 7.90 -92.71 -0.73 18.04 16 45 H 0.28 13.92 8.31 -92.71 -0.77 13.15 16 Total: -1.00 -73.87 385.05 1.27 -72.60 By element: Atomic # 1 Polarization: 32.24 SS G_CDS: -0.78 Total: 31.46 kcal Atomic # 6 Polarization: 16.93 SS G_CDS: 7.25 Total: 24.18 kcal Atomic # 7 Polarization: -116.70 SS G_CDS: -7.11 Total: -123.81 kcal Atomic # 8 Polarization: -48.78 SS G_CDS: -0.12 Total: -48.90 kcal Atomic # 14 Polarization: 42.44 SS G_CDS: 2.03 Total: 44.46 kcal Total: -73.87 1.27 -72.60 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001570337270.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.901 kcal (2) G-P(sol) polarization free energy of solvation -73.875 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.973 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.271 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.604 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.702 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 5.54 seconds