Wall clock time and date at job start Wed Apr 1 2020 04:03:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08999 * 109.47363 * 2 1 4 4 N 1.46499 * 109.46929 * 239.99747 * 2 1 3 5 5 C 1.36937 * 120.00111 * 85.00274 * 4 2 1 6 6 H 1.08003 * 119.99729 * 0.02562 * 5 4 2 7 7 C 1.38810 * 120.00665 * 179.97438 * 5 4 2 8 8 N 1.31617 * 120.00416 * 180.02562 * 7 5 4 9 9 Si 1.86806 * 119.99624 * 0.02562 * 7 5 4 10 10 H 1.48504 * 109.46949 * 270.00081 * 9 7 5 11 11 H 1.48502 * 109.47180 * 29.99595 * 9 7 5 12 12 H 1.48495 * 109.47408 * 150.00198 * 9 7 5 13 13 C 1.52999 * 109.47108 * 120.00235 * 2 1 3 14 14 H 1.09005 * 109.50868 * 299.89729 * 13 2 1 15 15 C 1.53298 * 109.51603 * 179.74659 * 13 2 1 16 16 N 1.47144 * 108.38497 * 187.77118 * 15 13 2 17 17 C 1.34777 * 120.98242 * 230.55213 * 16 15 13 18 18 O 1.21585 * 120.00241 * 174.40119 * 17 16 15 19 19 C 1.47536 * 120.00053 * 354.40313 * 17 16 15 20 20 C 1.39411 * 120.75262 * 314.73896 * 19 17 16 21 21 N 1.31920 * 121.01806 * 179.66236 * 20 19 17 22 22 C 1.31798 * 122.59355 * 0.65071 * 21 20 19 23 23 C 1.39435 * 120.63516 * 359.65730 * 22 21 20 24 24 N 1.35702 * 134.43357 * 180.02562 * 23 22 21 25 25 C 1.30122 * 109.50602 * 179.97438 * 24 23 22 26 26 N 1.36264 * 110.05928 * 0.02562 * 25 24 23 27 27 H 0.96991 * 126.30320 * 180.02562 * 26 25 24 28 28 C 1.36930 * 107.40004 * 359.97438 * 26 25 24 29 29 C 1.47151 * 118.03876 * 50.53696 * 16 15 13 30 30 C 1.53297 * 108.38101 * 309.46319 * 29 16 15 31 31 O 1.42958 * 109.51540 * 59.99578 * 13 2 1 32 32 H 1.09003 * 109.46900 * 60.00380 * 1 2 3 33 33 H 1.08999 * 109.47363 * 179.97438 * 1 2 3 34 34 H 1.09002 * 109.47407 * 299.99872 * 1 2 3 35 35 H 0.96996 * 120.00625 * 265.00156 * 4 2 1 36 36 H 0.96996 * 119.99648 * 180.02562 * 8 7 5 37 37 H 1.09002 * 109.67713 * 307.49490 * 15 13 2 38 38 H 1.09005 * 109.68020 * 68.04322 * 15 13 2 39 39 H 1.07996 * 119.49301 * 359.97438 * 20 19 17 40 40 H 1.08004 * 119.68263 * 179.68818 * 22 21 20 41 41 H 1.07998 * 124.97648 * 180.02562 * 25 24 23 42 42 H 1.08994 * 109.68387 * 189.73877 * 29 16 15 43 43 H 1.09004 * 109.68438 * 69.18246 * 29 16 15 44 44 H 1.08999 * 109.51262 * 292.37349 * 30 29 16 45 45 H 1.09000 * 109.55354 * 172.25255 * 30 29 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0183 -0.6907 -1.1961 5 6 2.1491 -0.0076 -2.3758 6 1 1.8927 1.0404 -2.4242 7 6 2.6122 -0.6618 -3.5091 8 7 2.7384 -0.0051 -4.6427 9 14 3.0564 -2.4743 -3.4252 10 1 4.4890 -2.6165 -3.0607 11 1 2.2161 -3.1430 -2.3995 12 1 2.8175 -3.1043 -4.7485 13 6 2.0400 -0.7213 1.2492 14 1 1.6785 -0.2069 2.1397 15 6 3.5729 -0.7274 1.2471 16 7 4.0351 -1.5830 2.3514 17 6 4.9537 -1.1415 3.2334 18 8 5.2481 -1.8225 4.1966 19 6 5.6019 0.1681 3.0301 20 6 6.0806 0.5393 1.7744 21 7 6.6551 1.7117 1.5853 22 6 6.8214 2.5859 2.5574 23 6 6.3813 2.3035 3.8500 24 7 6.4043 2.9744 5.0293 25 6 5.8487 2.2469 5.9540 26 7 5.4330 1.0604 5.4285 27 1 4.9892 0.3438 5.9083 28 6 5.7560 1.0664 4.0978 29 6 3.4647 -2.9347 2.4646 30 6 1.9370 -2.8210 2.4075 31 8 1.5639 -2.0693 1.2501 32 1 -0.3633 0.5138 -0.8901 33 1 -0.3634 -1.0276 -0.0005 34 1 -0.3634 0.5138 0.8900 35 1 2.2489 -1.6318 -1.1527 36 1 3.0617 -0.4624 -5.4346 37 1 3.9371 -1.1231 0.2989 38 1 3.9443 0.2876 1.3887 39 1 5.9750 -0.1413 0.9426 40 1 7.3028 3.5304 2.3508 41 1 5.7337 2.5404 6.9870 42 1 3.7644 -3.3814 3.4126 43 1 3.8179 -3.5526 1.6390 44 1 1.5759 -2.3146 3.3026 45 1 1.4989 -3.8175 2.3513 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001570972772.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:03:02 Heat of formation + Delta-G solvation = 11.224661 kcal Electronic energy + Delta-G solvation = -31241.946108 eV Core-core repulsion = 27067.357201 eV Total energy + Delta-G solvation = -4174.588907 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -43.57896 -41.63116 -39.91085 -39.38134 -37.18074 -35.98978 -34.53470 -34.18554 -32.66371 -31.91942 -31.15603 -30.44198 -28.98635 -25.99717 -25.78251 -24.92115 -24.24835 -23.86492 -22.77904 -21.39879 -20.80442 -19.80294 -19.58223 -18.94867 -18.33646 -17.78675 -17.33355 -17.00478 -16.57393 -16.43473 -16.38054 -16.10789 -15.86939 -15.79679 -15.30099 -15.10137 -14.91086 -14.69241 -14.38000 -14.23635 -14.17273 -13.73567 -13.65073 -13.34315 -13.11193 -12.83914 -12.60785 -12.49661 -12.10851 -12.08320 -11.91376 -11.77875 -11.74796 -11.50075 -11.37660 -11.17449 -10.96791 -10.67783 -10.29050 -9.80645 -9.51588 -9.24357 -7.95927 -5.27717 -0.72297 0.16117 1.21130 1.41175 1.43237 1.50806 1.54119 1.74091 1.74638 2.53041 2.62264 2.69318 2.95667 3.05301 3.37250 3.37588 3.46079 3.54697 3.70830 3.78542 3.81322 3.95125 4.02593 4.09117 4.16090 4.17251 4.32180 4.37445 4.50721 4.57472 4.67845 4.71943 4.74906 4.78143 4.90211 5.02050 5.03061 5.14290 5.22067 5.27286 5.57155 5.84305 5.98188 6.15055 6.17485 6.29040 6.51580 6.71521 6.81198 7.15112 7.90746 8.10720 9.25711 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.011963 B = 0.003820 C = 0.003399 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2340.006811 B = 7328.685078 C = 8234.539253 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.180 3.820 3 H 0.066 0.934 4 N -0.742 5.742 5 C -0.219 4.219 6 H 0.061 0.939 7 C -0.058 4.058 8 N -0.984 5.984 9 Si 0.942 3.058 10 H -0.279 1.279 11 H -0.254 1.254 12 H -0.302 1.302 13 C 0.087 3.913 14 H 0.083 0.917 15 C 0.080 3.920 16 N -0.599 5.599 17 C 0.574 3.426 18 O -0.564 6.564 19 C -0.184 4.184 20 C 0.135 3.865 21 N -0.502 5.502 22 C 0.192 3.808 23 C -0.024 4.024 24 N -0.507 5.507 25 C 0.290 3.710 26 N -0.580 5.580 27 H 0.440 0.560 28 C 0.108 3.892 29 C 0.073 3.927 30 C 0.050 3.950 31 O -0.382 6.382 32 H 0.035 0.965 33 H 0.051 0.949 34 H 0.069 0.931 35 H 0.368 0.632 36 H 0.255 0.745 37 H 0.077 0.923 38 H 0.098 0.902 39 H 0.167 0.833 40 H 0.192 0.808 41 H 0.277 0.723 42 H 0.108 0.892 43 H 0.080 0.920 44 H 0.065 0.935 45 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.870 -0.663 26.651 26.813 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.071 3.929 3 H 0.084 0.916 4 N -0.386 5.386 5 C -0.350 4.350 6 H 0.079 0.921 7 C -0.250 4.250 8 N -0.635 5.635 9 Si 0.771 3.229 10 H -0.205 1.205 11 H -0.179 1.179 12 H -0.229 1.229 13 C 0.028 3.972 14 H 0.100 0.900 15 C -0.043 4.043 16 N -0.331 5.331 17 C 0.363 3.637 18 O -0.444 6.444 19 C -0.193 4.193 20 C -0.017 4.017 21 N -0.211 5.211 22 C 0.027 3.973 23 C -0.145 4.145 24 N -0.226 5.226 25 C 0.003 3.997 26 N -0.191 5.191 27 H 0.282 0.718 28 C -0.014 4.014 29 C -0.049 4.049 30 C -0.027 4.027 31 O -0.301 6.301 32 H 0.054 0.946 33 H 0.070 0.930 34 H 0.087 0.913 35 H 0.202 0.798 36 H 0.064 0.936 37 H 0.095 0.905 38 H 0.116 0.884 39 H 0.184 0.816 40 H 0.209 0.791 41 H 0.293 0.707 42 H 0.127 0.873 43 H 0.098 0.902 44 H 0.083 0.917 45 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 3.537 0.053 26.087 26.326 hybrid contribution -0.335 -2.259 0.218 2.294 sum 3.202 -2.206 26.305 26.591 Atomic orbital electron populations 1.22177 0.96848 1.01478 1.00678 1.20448 0.93695 0.94864 0.83849 0.91610 1.42695 1.79631 1.09608 1.06657 1.19014 1.34372 0.94371 0.87268 0.92087 1.25329 1.02723 1.01637 0.95281 1.69865 1.55004 1.37458 1.01147 0.85592 0.78626 0.81968 0.76758 1.20492 1.17852 1.22919 1.22714 0.91556 0.84100 0.98862 0.89970 1.22643 0.96004 0.96101 0.89574 1.48129 1.40411 1.16162 1.28400 1.18062 0.78663 0.85168 0.81785 1.90740 1.64484 1.58534 1.30628 1.19703 1.09872 0.95870 0.93864 1.22944 0.91560 0.93135 0.94017 1.67800 1.16409 1.03116 1.33821 1.22758 0.91552 0.98481 0.84488 1.20325 1.05354 0.92560 0.96213 1.70512 1.22790 1.31212 0.98130 1.26736 0.91520 0.79819 1.01578 1.43192 1.50097 1.19508 1.06302 0.71762 1.18735 0.99647 0.96705 0.86333 1.22534 0.95135 0.82549 1.04679 1.23131 0.92550 0.98485 0.88577 1.88053 1.75448 1.23521 1.43054 0.94571 0.93020 0.91251 0.79847 0.93593 0.90459 0.88382 0.81596 0.79122 0.70742 0.87350 0.90218 0.91722 0.85299 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.93 9.35 71.98 0.67 -4.26 16 2 C 0.18 6.21 2.74 44.99 0.12 6.33 16 3 H 0.07 2.32 8.08 -2.39 -0.02 2.30 16 4 N -0.74 -32.48 4.09 -322.95 -1.32 -33.80 16 5 C -0.22 -11.94 10.41 84.03 0.87 -11.07 16 6 H 0.06 3.64 8.06 -2.91 -0.02 3.62 16 7 C -0.06 -3.37 5.50 84.86 0.47 -2.90 16 8 N -0.98 -62.43 13.97 21.65 0.30 -62.13 16 9 Si 0.94 45.17 27.74 68.60 1.90 47.07 16 10 H -0.28 -12.98 7.11 99.48 0.71 -12.28 16 11 H -0.25 -11.20 6.52 99.48 0.65 -10.55 16 12 H -0.30 -14.90 7.11 99.48 0.71 -14.20 16 13 C 0.09 2.37 2.53 30.69 0.08 2.45 16 14 H 0.08 1.90 8.14 -2.38 -0.02 1.88 16 15 C 0.08 2.17 4.47 86.36 0.39 2.55 16 16 N -0.60 -14.64 3.02 -821.11 -2.48 -17.12 16 17 C 0.57 14.89 7.30 86.70 0.63 15.52 16 18 O -0.56 -16.23 16.47 -3.98 -0.07 -16.30 16 19 C -0.18 -4.67 4.94 -20.02 -0.10 -4.77 16 20 C 0.14 3.65 8.71 84.96 0.74 4.39 16 21 N -0.50 -13.84 10.30 -193.92 -2.00 -15.83 16 22 C 0.19 4.54 11.25 84.99 0.96 5.49 16 23 C -0.02 -0.56 7.27 39.46 0.29 -0.28 16 24 N -0.51 -9.96 11.28 -191.91 -2.16 -12.13 16 25 C 0.29 3.32 12.97 179.98 2.34 5.65 16 26 N -0.58 -8.70 6.19 -190.33 -1.18 -9.87 16 27 H 0.44 4.96 8.96 -92.71 -0.83 4.13 16 28 C 0.11 2.45 7.04 39.50 0.28 2.73 16 29 C 0.07 1.53 6.65 86.35 0.57 2.10 16 30 C 0.05 0.95 6.98 72.08 0.50 1.46 16 31 O -0.38 -10.42 9.22 -148.98 -1.37 -11.79 16 32 H 0.04 1.32 8.14 -2.39 -0.02 1.30 16 33 H 0.05 1.72 7.68 -2.39 -0.02 1.70 16 34 H 0.07 1.78 8.14 -2.39 -0.02 1.76 16 35 H 0.37 16.04 5.06 -92.71 -0.47 15.57 16 36 H 0.26 15.58 8.31 -92.71 -0.77 14.81 16 37 H 0.08 2.47 7.26 -2.39 -0.02 2.45 16 38 H 0.10 2.63 5.24 -2.38 -0.01 2.62 16 39 H 0.17 4.44 7.08 -2.91 -0.02 4.42 16 40 H 0.19 3.46 8.06 -2.91 -0.02 3.43 16 41 H 0.28 -0.27 8.06 -2.91 -0.02 -0.29 16 42 H 0.11 2.12 7.06 -2.39 -0.02 2.10 16 43 H 0.08 1.71 8.14 -2.38 -0.02 1.69 16 44 H 0.06 1.09 8.14 -2.39 -0.02 1.08 16 45 H 0.13 1.89 8.14 -2.39 -0.02 1.87 16 Total: -1.00 -77.23 368.89 0.13 -77.09 By element: Atomic # 1 Polarization: 29.72 SS G_CDS: -0.30 Total: 29.42 kcal Atomic # 6 Polarization: 16.59 SS G_CDS: 8.81 Total: 25.40 kcal Atomic # 7 Polarization: -142.05 SS G_CDS: -8.84 Total: -150.89 kcal Atomic # 8 Polarization: -26.65 SS G_CDS: -1.44 Total: -28.09 kcal Atomic # 14 Polarization: 45.17 SS G_CDS: 1.90 Total: 47.07 kcal Total: -77.23 0.13 -77.09 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001570972772.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.319 kcal (2) G-P(sol) polarization free energy of solvation -77.229 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.090 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.134 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.095 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.225 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds