Wall clock time and date at job start Wed Apr 1 2020 04:03:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08996 * 109.46884 * 2 1 4 4 N 1.46504 * 109.47365 * 120.00263 * 2 1 3 5 5 C 1.36931 * 119.99945 * 274.72547 * 4 2 1 6 6 H 1.08001 * 119.99811 * 0.02562 * 5 4 2 7 7 C 1.38815 * 120.00336 * 180.02562 * 5 4 2 8 8 N 1.31625 * 119.99496 * 359.97438 * 7 5 4 9 9 Si 1.86794 * 120.00445 * 180.02562 * 7 5 4 10 10 H 1.48498 * 109.46995 * 59.99381 * 9 7 5 11 11 H 1.48494 * 109.47211 * 179.97438 * 9 7 5 12 12 H 1.48497 * 109.46755 * 299.99725 * 9 7 5 13 13 C 1.52997 * 109.47111 * 240.00401 * 2 1 3 14 14 H 1.08998 * 109.51580 * 185.09926 * 13 2 1 15 15 C 1.53298 * 109.51592 * 64.99572 * 13 2 1 16 16 N 1.47151 * 108.38670 * 187.77338 * 15 13 2 17 17 C 1.34776 * 120.98104 * 230.55379 * 16 15 13 18 18 O 1.21583 * 120.00033 * 355.96323 * 17 16 15 19 19 C 1.47532 * 119.99697 * 175.95538 * 17 16 15 20 20 C 1.39410 * 120.75302 * 52.01414 * 19 17 16 21 21 N 1.31917 * 121.01844 * 179.67727 * 20 19 17 22 22 C 1.31794 * 122.59500 * 0.63749 * 21 20 19 23 23 C 1.39437 * 120.63454 * 359.65110 * 22 21 20 24 24 N 1.35707 * 134.43074 * 180.02562 * 23 22 21 25 25 C 1.30127 * 109.50150 * 180.02562 * 24 23 22 26 26 N 1.36261 * 110.05625 * 359.97438 * 25 24 23 27 27 H 0.97006 * 126.29498 * 180.02562 * 26 25 24 28 28 C 1.36919 * 107.40768 * 0.02562 * 26 25 24 29 29 C 1.47149 * 118.03236 * 50.54217 * 16 15 13 30 30 C 1.53298 * 108.38313 * 309.45814 * 29 16 15 31 31 O 1.42955 * 109.22077 * 52.30657 * 30 29 16 32 32 H 1.09002 * 109.47239 * 180.02562 * 1 2 3 33 33 H 1.09005 * 109.47220 * 299.99456 * 1 2 3 34 34 H 1.08996 * 109.47179 * 59.99956 * 1 2 3 35 35 H 0.96997 * 119.99589 * 94.99858 * 4 2 1 36 36 H 0.96998 * 119.99926 * 180.02562 * 8 7 5 37 37 H 1.08999 * 109.68071 * 307.50049 * 15 13 2 38 38 H 1.09006 * 109.67482 * 68.04831 * 15 13 2 39 39 H 1.08000 * 119.49405 * 359.97438 * 20 19 17 40 40 H 1.08008 * 119.68064 * 179.67663 * 22 21 20 41 41 H 1.08001 * 124.97050 * 180.02562 * 25 24 23 42 42 H 1.08992 * 109.68983 * 69.18455 * 29 16 15 43 43 H 1.09005 * 109.67654 * 189.73935 * 29 16 15 44 44 H 1.08999 * 109.51174 * 172.23439 * 30 29 16 45 45 H 1.09007 * 109.51164 * 292.32885 * 30 29 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0184 -0.6907 1.1962 5 6 2.1545 -0.0063 2.3743 6 1 1.9015 1.0426 2.4218 7 6 2.6178 -0.6605 3.5076 8 7 2.9257 -1.9389 3.4497 9 14 2.8028 0.2730 5.1150 10 1 1.4831 0.8146 5.5276 11 1 3.3107 -0.6457 6.1653 12 1 3.7612 1.3921 4.9299 13 6 2.0400 -0.7211 -1.2493 14 1 3.1261 -0.8013 -1.2055 15 6 1.6349 0.0698 -2.4984 16 7 1.9697 -0.7333 -3.6851 17 6 2.6770 -0.2048 -4.7034 18 8 2.9852 0.9711 -4.6837 19 6 3.0773 -1.0534 -5.8419 20 6 2.1358 -1.8241 -6.5224 21 7 2.4869 -2.5798 -7.5450 22 6 3.7307 -2.6623 -7.9729 23 6 4.7450 -1.9333 -7.3533 24 7 6.0815 -1.8067 -7.5521 25 6 6.5747 -0.9807 -6.6759 26 7 5.5863 -0.5225 -5.8574 27 1 5.6923 0.1032 -5.1238 28 6 4.4161 -1.1077 -6.2610 29 6 1.5097 -2.1304 -3.7270 30 6 1.9209 -2.8142 -2.4180 31 8 1.4659 -2.0289 -1.3136 32 1 -0.3634 -1.0277 0.0005 33 1 -0.3634 0.5138 0.8901 34 1 -0.3633 0.5138 -0.8899 35 1 2.2491 -1.6318 1.1525 36 1 3.2491 -2.3962 4.2417 37 1 0.5627 0.2648 -2.4777 38 1 2.1797 1.0135 -2.5280 39 1 1.1021 -1.7984 -6.2105 40 1 3.9665 -3.3003 -8.8119 41 1 7.6151 -0.6989 -6.6079 42 1 0.4250 -2.1570 -3.8299 43 1 1.9717 -2.6438 -4.5703 44 1 1.4720 -3.8063 -2.3689 45 1 3.0066 -2.9036 -2.3794 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001570972774.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:03:17 Heat of formation + Delta-G solvation = 33.551653 kcal Electronic energy + Delta-G solvation = -30454.786818 eV Core-core repulsion = 26281.166082 eV Total energy + Delta-G solvation = -4173.620736 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -42.89804 -40.61238 -38.95929 -38.36057 -35.64043 -34.70256 -33.78939 -32.60527 -31.69363 -30.64843 -30.14587 -28.58226 -27.41055 -25.29448 -24.58478 -23.78865 -23.33663 -22.92429 -21.92165 -19.99883 -19.72722 -18.84249 -18.24985 -17.55465 -17.21983 -16.63389 -16.24215 -15.92170 -15.80109 -15.47455 -15.28294 -15.10260 -14.64599 -14.53787 -14.36469 -14.05133 -13.52817 -13.41010 -13.33563 -12.97276 -12.94395 -12.56453 -12.26319 -12.06416 -11.44132 -11.34203 -11.19953 -10.97118 -10.87436 -10.77879 -10.74771 -10.54800 -10.33137 -10.09376 -9.93794 -9.81937 -9.69014 -9.55090 -8.93520 -8.84678 -8.63346 -6.98307 -5.77508 -3.06684 0.02913 0.90709 2.03296 2.30345 2.39892 2.61429 3.35755 3.42299 3.46942 3.47822 3.61165 3.82616 3.87962 4.05002 4.22733 4.47374 4.53047 4.61344 4.65880 4.78935 4.80463 4.99582 5.05063 5.17486 5.21848 5.31366 5.46731 5.54692 5.56268 5.62699 5.69030 5.73275 5.87497 5.92296 5.94768 6.09341 6.22472 6.39692 6.59361 6.68651 6.76589 7.00096 7.11734 7.13983 7.38025 7.48335 7.67106 7.73482 8.40534 9.52376 10.09282 10.45848 11.44766 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.017524 B = 0.002557 C = 0.002436 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1597.448582 B =10949.518215 C =11490.878463 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.185 3.815 3 H 0.059 0.941 4 N -0.719 5.719 5 C -0.241 4.241 6 H 0.070 0.930 7 C -0.012 4.012 8 N -0.931 5.931 9 Si 0.907 3.093 10 H -0.286 1.286 11 H -0.291 1.291 12 H -0.286 1.286 13 C 0.076 3.924 14 H 0.062 0.938 15 C 0.082 3.918 16 N -0.601 5.601 17 C 0.565 3.435 18 O -0.535 6.535 19 C -0.168 4.168 20 C 0.133 3.867 21 N -0.484 5.484 22 C 0.193 3.807 23 C -0.011 4.011 24 N -0.477 5.477 25 C 0.272 3.728 26 N -0.585 5.585 27 H 0.434 0.566 28 C 0.119 3.881 29 C 0.062 3.938 30 C 0.047 3.953 31 O -0.356 6.356 32 H 0.057 0.943 33 H 0.053 0.947 34 H 0.035 0.965 35 H 0.389 0.611 36 H 0.255 0.745 37 H 0.086 0.914 38 H 0.100 0.900 39 H 0.170 0.830 40 H 0.172 0.828 41 H 0.226 0.774 42 H 0.086 0.914 43 H 0.094 0.906 44 H 0.107 0.893 45 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.319 -1.006 -23.354 23.490 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.075 3.925 3 H 0.077 0.923 4 N -0.361 5.361 5 C -0.372 4.372 6 H 0.088 0.912 7 C -0.208 4.208 8 N -0.579 5.579 9 Si 0.738 3.262 10 H -0.212 1.212 11 H -0.217 1.217 12 H -0.213 1.213 13 C 0.017 3.983 14 H 0.080 0.920 15 C -0.040 4.040 16 N -0.333 5.333 17 C 0.352 3.648 18 O -0.413 6.413 19 C -0.176 4.176 20 C -0.019 4.019 21 N -0.194 5.194 22 C 0.028 3.972 23 C -0.132 4.132 24 N -0.197 5.197 25 C -0.016 4.016 26 N -0.196 5.196 27 H 0.274 0.726 28 C -0.002 4.002 29 C -0.061 4.061 30 C -0.031 4.031 31 O -0.273 6.273 32 H 0.076 0.924 33 H 0.072 0.928 34 H 0.054 0.946 35 H 0.223 0.777 36 H 0.065 0.935 37 H 0.104 0.896 38 H 0.119 0.881 39 H 0.187 0.813 40 H 0.189 0.811 41 H 0.242 0.758 42 H 0.104 0.896 43 H 0.112 0.888 44 H 0.125 0.875 45 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 2.108 -1.248 -24.088 24.212 hybrid contribution 0.716 1.463 2.173 2.715 sum 2.824 0.214 -21.915 22.097 Atomic orbital electron populations 1.22419 0.98539 1.01714 0.99607 1.20188 0.92934 0.94540 0.84880 0.92318 1.42342 1.77871 1.10893 1.04947 1.19196 1.36830 0.93748 0.87450 0.91216 1.24743 1.02122 0.95948 0.98030 1.69669 1.50700 1.08549 1.28963 0.86276 0.77801 0.78576 0.83573 1.21241 1.21711 1.21314 1.22989 0.97511 0.83152 0.94664 0.92020 1.22593 1.02442 0.95666 0.83309 1.48131 1.53549 1.13087 1.18569 1.18041 0.78066 0.86895 0.81833 1.90812 1.55915 1.15767 1.78803 1.19817 0.91450 1.04726 1.01655 1.22807 0.99103 0.89693 0.90276 1.67742 1.18335 1.19931 1.13381 1.22337 0.85196 0.93227 0.96474 1.20165 0.92886 1.02287 0.97826 1.70512 1.06519 1.18600 1.24040 1.25695 0.95873 0.92919 0.87131 1.43153 1.06244 1.39414 1.30746 0.72598 1.18635 0.87655 0.96830 0.97056 1.22801 1.01109 0.81558 1.00590 1.22896 0.99464 0.95362 0.85383 1.88122 1.67389 1.25762 1.46063 0.92355 0.92823 0.94645 0.77672 0.93478 0.89580 0.88145 0.81332 0.81105 0.75779 0.89607 0.88800 0.87544 0.93040 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.90 9.06 37.16 0.34 -2.56 16 2 C 0.19 3.58 2.77 -67.93 -0.19 3.39 16 3 H 0.06 1.13 8.08 -51.93 -0.42 0.71 16 4 N -0.72 -17.85 5.10 -53.43 -0.27 -18.12 16 5 C -0.24 -6.61 9.93 -15.06 -0.15 -6.76 16 6 H 0.07 1.84 7.83 -52.49 -0.41 1.43 16 7 C -0.01 -0.35 5.50 -17.43 -0.10 -0.44 16 8 N -0.93 -28.00 13.06 55.49 0.72 -27.28 16 9 Si 0.91 22.23 29.55 -169.99 -5.02 17.20 16 10 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 11 H -0.29 -7.21 7.11 56.52 0.40 -6.80 16 12 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 13 C 0.08 1.24 2.61 -26.58 -0.07 1.17 16 14 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 15 C 0.08 1.11 5.81 -3.53 -0.02 1.09 16 16 N -0.60 -7.23 3.02 -173.51 -0.52 -7.76 16 17 C 0.56 7.24 7.26 -12.47 -0.09 7.15 16 18 O -0.54 -8.40 16.56 5.29 0.09 -8.31 16 19 C -0.17 -1.85 4.95 -104.86 -0.52 -2.37 16 20 C 0.13 1.26 8.62 -17.08 -0.15 1.12 16 21 N -0.48 -4.73 10.30 -12.64 -0.13 -4.86 16 22 C 0.19 1.79 11.25 -17.12 -0.19 1.59 16 23 C -0.01 -0.11 7.27 -84.73 -0.62 -0.73 16 24 N -0.48 -4.73 11.28 -12.01 -0.14 -4.86 16 25 C 0.27 1.91 12.97 -89.56 -1.16 0.75 16 26 N -0.59 -5.01 6.19 -11.51 -0.07 -5.08 16 27 H 0.43 3.20 8.96 -40.82 -0.37 2.84 16 28 C 0.12 1.29 7.10 -83.81 -0.60 0.70 16 29 C 0.06 0.61 5.58 -3.53 -0.02 0.59 16 30 C 0.05 0.56 6.98 37.31 0.26 0.82 16 31 O -0.36 -5.74 9.24 -35.23 -0.33 -6.06 16 32 H 0.06 1.10 7.56 -51.93 -0.39 0.70 16 33 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 34 H 0.03 0.52 6.42 -51.93 -0.33 0.18 16 35 H 0.39 10.46 7.59 -40.82 -0.31 10.15 16 36 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 37 H 0.09 1.11 6.27 -51.93 -0.33 0.78 16 38 H 0.10 1.43 7.11 -51.93 -0.37 1.06 16 39 H 0.17 1.25 7.21 -52.49 -0.38 0.87 16 40 H 0.17 1.12 8.06 -52.48 -0.42 0.69 16 41 H 0.23 0.46 8.06 -52.49 -0.42 0.04 16 42 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 43 H 0.09 0.78 4.86 -51.93 -0.25 0.53 16 44 H 0.11 1.05 8.14 -51.93 -0.42 0.62 16 45 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 LS Contribution 370.33 15.07 5.58 5.58 Total: -1.00 -35.33 370.33 -9.01 -44.34 By element: Atomic # 1 Polarization: 15.37 SS G_CDS: -5.65 Total: 9.72 kcal Atomic # 6 Polarization: 8.77 SS G_CDS: -3.27 Total: 5.50 kcal Atomic # 7 Polarization: -67.56 SS G_CDS: -0.41 Total: -67.96 kcal Atomic # 8 Polarization: -14.13 SS G_CDS: -0.24 Total: -14.37 kcal Atomic # 14 Polarization: 22.23 SS G_CDS: -5.02 Total: 17.20 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -35.33 -9.01 -44.34 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001570972774.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.891 kcal (2) G-P(sol) polarization free energy of solvation -35.329 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.562 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.010 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.339 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.552 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds