Wall clock time and date at job start Wed Apr 1 2020 04:03:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08996 * 109.46884 * 2 1 4 4 N 1.46504 * 109.47365 * 120.00263 * 2 1 3 5 5 C 1.36931 * 119.99945 * 274.72547 * 4 2 1 6 6 H 1.08001 * 119.99811 * 0.02562 * 5 4 2 7 7 C 1.38815 * 120.00336 * 180.02562 * 5 4 2 8 8 N 1.31625 * 119.99496 * 359.97438 * 7 5 4 9 9 Si 1.86794 * 120.00445 * 180.02562 * 7 5 4 10 10 H 1.48498 * 109.46995 * 59.99381 * 9 7 5 11 11 H 1.48494 * 109.47211 * 179.97438 * 9 7 5 12 12 H 1.48497 * 109.46755 * 299.99725 * 9 7 5 13 13 C 1.52997 * 109.47111 * 240.00401 * 2 1 3 14 14 H 1.08998 * 109.51580 * 185.09926 * 13 2 1 15 15 C 1.53298 * 109.51592 * 64.99572 * 13 2 1 16 16 N 1.47151 * 108.38670 * 187.77338 * 15 13 2 17 17 C 1.34776 * 120.98104 * 230.55379 * 16 15 13 18 18 O 1.21583 * 120.00033 * 355.96323 * 17 16 15 19 19 C 1.47532 * 119.99697 * 175.95538 * 17 16 15 20 20 C 1.39410 * 120.75302 * 52.01414 * 19 17 16 21 21 N 1.31917 * 121.01844 * 179.67727 * 20 19 17 22 22 C 1.31794 * 122.59500 * 0.63749 * 21 20 19 23 23 C 1.39437 * 120.63454 * 359.65110 * 22 21 20 24 24 N 1.35707 * 134.43074 * 180.02562 * 23 22 21 25 25 C 1.30127 * 109.50150 * 180.02562 * 24 23 22 26 26 N 1.36261 * 110.05625 * 359.97438 * 25 24 23 27 27 H 0.97006 * 126.29498 * 180.02562 * 26 25 24 28 28 C 1.36919 * 107.40768 * 0.02562 * 26 25 24 29 29 C 1.47149 * 118.03236 * 50.54217 * 16 15 13 30 30 C 1.53298 * 108.38313 * 309.45814 * 29 16 15 31 31 O 1.42955 * 109.22077 * 52.30657 * 30 29 16 32 32 H 1.09002 * 109.47239 * 180.02562 * 1 2 3 33 33 H 1.09005 * 109.47220 * 299.99456 * 1 2 3 34 34 H 1.08996 * 109.47179 * 59.99956 * 1 2 3 35 35 H 0.96997 * 119.99589 * 94.99858 * 4 2 1 36 36 H 0.96998 * 119.99926 * 180.02562 * 8 7 5 37 37 H 1.08999 * 109.68071 * 307.50049 * 15 13 2 38 38 H 1.09006 * 109.67482 * 68.04831 * 15 13 2 39 39 H 1.08000 * 119.49405 * 359.97438 * 20 19 17 40 40 H 1.08008 * 119.68064 * 179.67663 * 22 21 20 41 41 H 1.08001 * 124.97050 * 180.02562 * 25 24 23 42 42 H 1.08992 * 109.68983 * 69.18455 * 29 16 15 43 43 H 1.09005 * 109.67654 * 189.73935 * 29 16 15 44 44 H 1.08999 * 109.51174 * 172.23439 * 30 29 16 45 45 H 1.09007 * 109.51164 * 292.32885 * 30 29 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0184 -0.6907 1.1962 5 6 2.1545 -0.0063 2.3743 6 1 1.9015 1.0426 2.4218 7 6 2.6178 -0.6605 3.5076 8 7 2.9257 -1.9389 3.4497 9 14 2.8028 0.2730 5.1150 10 1 1.4831 0.8146 5.5276 11 1 3.3107 -0.6457 6.1653 12 1 3.7612 1.3921 4.9299 13 6 2.0400 -0.7211 -1.2493 14 1 3.1261 -0.8013 -1.2055 15 6 1.6349 0.0698 -2.4984 16 7 1.9697 -0.7333 -3.6851 17 6 2.6770 -0.2048 -4.7034 18 8 2.9852 0.9711 -4.6837 19 6 3.0773 -1.0534 -5.8419 20 6 2.1358 -1.8241 -6.5224 21 7 2.4869 -2.5798 -7.5450 22 6 3.7307 -2.6623 -7.9729 23 6 4.7450 -1.9333 -7.3533 24 7 6.0815 -1.8067 -7.5521 25 6 6.5747 -0.9807 -6.6759 26 7 5.5863 -0.5225 -5.8574 27 1 5.6923 0.1032 -5.1238 28 6 4.4161 -1.1077 -6.2610 29 6 1.5097 -2.1304 -3.7270 30 6 1.9209 -2.8142 -2.4180 31 8 1.4659 -2.0289 -1.3136 32 1 -0.3634 -1.0277 0.0005 33 1 -0.3634 0.5138 0.8901 34 1 -0.3633 0.5138 -0.8899 35 1 2.2491 -1.6318 1.1525 36 1 3.2491 -2.3962 4.2417 37 1 0.5627 0.2648 -2.4777 38 1 2.1797 1.0135 -2.5280 39 1 1.1021 -1.7984 -6.2105 40 1 3.9665 -3.3003 -8.8119 41 1 7.6151 -0.6989 -6.6079 42 1 0.4250 -2.1570 -3.8299 43 1 1.9717 -2.6438 -4.5703 44 1 1.4720 -3.8063 -2.3689 45 1 3.0066 -2.9036 -2.3794 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001570972774.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:03:16 Heat of formation + Delta-G solvation = 7.611879 kcal Electronic energy + Delta-G solvation = -30455.911651 eV Core-core repulsion = 26281.166082 eV Total energy + Delta-G solvation = -4174.745569 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -43.57933 -41.61813 -39.90688 -39.31158 -37.16577 -35.88411 -34.58256 -34.26972 -32.58642 -31.83680 -31.07284 -30.02591 -28.63606 -26.58901 -25.71497 -25.02361 -24.24418 -23.88150 -22.86610 -21.25982 -20.79460 -19.57219 -19.35138 -18.97422 -18.30796 -17.76095 -17.17599 -17.02732 -16.64981 -16.55007 -16.34168 -16.14321 -15.90658 -15.67210 -15.46869 -15.12785 -14.93662 -14.54494 -14.36457 -14.20336 -14.02367 -13.67036 -13.61149 -13.20522 -13.00743 -12.81498 -12.46687 -12.43110 -12.23587 -12.10152 -11.96475 -11.79136 -11.65568 -11.54194 -11.40244 -11.17626 -10.93921 -10.67629 -10.28062 -9.75769 -9.49678 -9.01813 -7.92944 -5.21677 -0.68029 0.17017 1.20571 1.46787 1.49633 1.51382 1.55784 1.73392 1.74506 2.56032 2.62511 2.73613 2.96236 3.08235 3.39442 3.40720 3.48389 3.56243 3.77799 3.84187 3.89589 3.96181 4.05557 4.08342 4.15087 4.25430 4.34991 4.40726 4.53325 4.56065 4.60490 4.72162 4.77786 4.78460 4.93016 5.05123 5.08384 5.13254 5.25375 5.28616 5.50897 5.62518 6.02896 6.11892 6.19922 6.28533 6.49226 6.73480 6.80307 7.34875 8.10458 8.34871 9.30324 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.017524 B = 0.002557 C = 0.002436 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1597.448582 B =10949.518215 C =11490.878463 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.177 3.823 3 H 0.060 0.940 4 N -0.733 5.733 5 C -0.240 4.240 6 H 0.077 0.923 7 C -0.076 4.076 8 N -0.969 5.969 9 Si 0.972 3.028 10 H -0.278 1.278 11 H -0.297 1.297 12 H -0.278 1.278 13 C 0.091 3.909 14 H 0.039 0.961 15 C 0.093 3.907 16 N -0.599 5.599 17 C 0.569 3.431 18 O -0.570 6.570 19 C -0.183 4.183 20 C 0.139 3.861 21 N -0.492 5.492 22 C 0.194 3.806 23 C -0.025 4.025 24 N -0.505 5.505 25 C 0.286 3.714 26 N -0.588 5.588 27 H 0.437 0.563 28 C 0.099 3.901 29 C 0.069 3.931 30 C 0.041 3.959 31 O -0.378 6.378 32 H 0.046 0.954 33 H 0.036 0.964 34 H 0.072 0.928 35 H 0.375 0.625 36 H 0.250 0.750 37 H 0.100 0.900 38 H 0.092 0.908 39 H 0.190 0.810 40 H 0.195 0.805 41 H 0.271 0.729 42 H 0.109 0.891 43 H 0.112 0.888 44 H 0.130 0.870 45 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.931 -0.706 -24.926 25.010 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.068 3.932 3 H 0.078 0.922 4 N -0.373 5.373 5 C -0.371 4.371 6 H 0.095 0.905 7 C -0.269 4.269 8 N -0.620 5.620 9 Si 0.801 3.199 10 H -0.204 1.204 11 H -0.223 1.223 12 H -0.204 1.204 13 C 0.031 3.969 14 H 0.057 0.943 15 C -0.030 4.030 16 N -0.331 5.331 17 C 0.357 3.643 18 O -0.450 6.450 19 C -0.192 4.192 20 C -0.013 4.013 21 N -0.201 5.201 22 C 0.029 3.971 23 C -0.146 4.146 24 N -0.225 5.225 25 C -0.001 4.001 26 N -0.198 5.198 27 H 0.278 0.722 28 C -0.022 4.022 29 C -0.053 4.053 30 C -0.036 4.036 31 O -0.297 6.297 32 H 0.065 0.935 33 H 0.055 0.945 34 H 0.091 0.909 35 H 0.207 0.793 36 H 0.059 0.941 37 H 0.118 0.882 38 H 0.111 0.889 39 H 0.207 0.793 40 H 0.212 0.788 41 H 0.286 0.714 42 H 0.127 0.873 43 H 0.130 0.870 44 H 0.148 0.852 45 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 1.696 -0.931 -25.705 25.778 hybrid contribution 0.883 1.349 2.543 3.011 sum 2.579 0.418 -23.162 23.309 Atomic orbital electron populations 1.22224 0.96808 1.01263 1.00594 1.20427 0.93965 0.94494 0.84343 0.92215 1.42523 1.78304 1.10394 1.06082 1.19606 1.35005 0.94128 0.88405 0.90498 1.25547 1.03043 0.96855 1.01410 1.69833 1.52624 1.10147 1.29404 0.85238 0.77967 0.77289 0.79434 1.20433 1.22346 1.20406 1.22582 0.95957 0.83857 0.94504 0.94278 1.22344 1.02971 0.94932 0.82719 1.48152 1.53338 1.13821 1.17790 1.18274 0.77269 0.86583 0.82166 1.90787 1.57163 1.17339 1.79686 1.19737 0.92063 1.05683 1.01734 1.23125 0.99681 0.88742 0.89708 1.67834 1.18545 1.20215 1.13552 1.22760 0.84863 0.92815 0.96627 1.20428 0.93528 1.02609 0.97990 1.70523 1.06319 1.20187 1.25464 1.26649 0.97132 0.91003 0.85328 1.43301 1.06074 1.39380 1.31036 0.72190 1.18904 0.88248 0.97481 0.97598 1.22921 1.02573 0.80044 0.99783 1.23153 0.99157 0.96106 0.85233 1.88076 1.67578 1.25800 1.48249 0.93454 0.94486 0.90919 0.79314 0.94146 0.88183 0.88915 0.79278 0.78845 0.71361 0.87257 0.87030 0.85236 0.94086 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.15 9.06 71.98 0.65 -4.50 16 2 C 0.18 6.81 2.77 44.99 0.12 6.94 16 3 H 0.06 2.28 8.08 -2.39 -0.02 2.27 16 4 N -0.73 -37.05 5.10 -322.95 -1.65 -38.70 16 5 C -0.24 -13.25 9.93 84.04 0.83 -12.42 16 6 H 0.08 4.05 7.83 -2.91 -0.02 4.03 16 7 C -0.08 -4.39 5.50 84.86 0.47 -3.93 16 8 N -0.97 -59.72 13.06 21.65 0.28 -59.44 16 9 Si 0.97 46.14 29.55 68.60 2.03 48.16 16 10 H -0.28 -12.73 7.11 99.48 0.71 -12.02 16 11 H -0.30 -14.27 7.11 99.48 0.71 -13.56 16 12 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 13 C 0.09 2.93 2.61 30.69 0.08 3.01 16 14 H 0.04 1.43 8.14 -2.39 -0.02 1.41 16 15 C 0.09 2.42 5.81 86.35 0.50 2.92 16 16 N -0.60 -13.56 3.02 -821.11 -2.48 -16.04 16 17 C 0.57 14.05 7.26 86.69 0.63 14.68 16 18 O -0.57 -17.71 16.56 -3.98 -0.07 -17.78 16 19 C -0.18 -3.84 4.95 -20.02 -0.10 -3.94 16 20 C 0.14 2.37 8.62 84.96 0.73 3.10 16 21 N -0.49 -8.67 10.30 -193.91 -2.00 -10.67 16 22 C 0.19 3.28 11.25 84.99 0.96 4.24 16 23 C -0.03 -0.50 7.27 39.46 0.29 -0.21 16 24 N -0.51 -9.28 11.28 -191.90 -2.16 -11.44 16 25 C 0.29 3.50 12.97 179.98 2.34 5.84 16 26 N -0.59 -9.50 6.19 -190.33 -1.18 -10.68 16 27 H 0.44 6.24 8.96 -92.70 -0.83 5.41 16 28 C 0.10 2.06 7.10 39.50 0.28 2.34 16 29 C 0.07 1.18 5.58 86.36 0.48 1.66 16 30 C 0.04 0.91 6.98 72.08 0.50 1.42 16 31 O -0.38 -12.02 9.24 -148.98 -1.38 -13.40 16 32 H 0.05 1.73 7.56 -2.39 -0.02 1.71 16 33 H 0.04 1.38 8.14 -2.38 -0.02 1.36 16 34 H 0.07 1.95 6.42 -2.39 -0.02 1.93 16 35 H 0.37 20.79 7.59 -92.71 -0.70 20.09 16 36 H 0.25 14.97 8.31 -92.71 -0.77 14.20 16 37 H 0.10 2.33 6.27 -2.39 -0.01 2.31 16 38 H 0.09 2.59 7.11 -2.38 -0.02 2.57 16 39 H 0.19 2.26 7.21 -2.91 -0.02 2.24 16 40 H 0.19 2.16 8.06 -2.91 -0.02 2.14 16 41 H 0.27 0.29 8.06 -2.91 -0.02 0.27 16 42 H 0.11 1.45 8.14 -2.39 -0.02 1.43 16 43 H 0.11 1.57 4.86 -2.38 -0.01 1.56 16 44 H 0.13 2.29 8.14 -2.39 -0.02 2.27 16 45 H 0.04 1.00 8.14 -2.38 -0.02 0.98 16 Total: -1.00 -77.88 370.33 -0.30 -78.19 By element: Atomic # 1 Polarization: 31.09 SS G_CDS: -0.47 Total: 30.63 kcal Atomic # 6 Polarization: 12.39 SS G_CDS: 8.77 Total: 21.15 kcal Atomic # 7 Polarization: -137.77 SS G_CDS: -9.19 Total: -146.96 kcal Atomic # 8 Polarization: -29.73 SS G_CDS: -1.44 Total: -31.17 kcal Atomic # 14 Polarization: 46.14 SS G_CDS: 2.03 Total: 48.16 kcal Total: -77.88 -0.30 -78.19 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001570972774.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.799 kcal (2) G-P(sol) polarization free energy of solvation -77.884 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.914 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.303 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.187 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.612 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds