Wall clock time and date at job start Wed Apr 1 2020 04:04:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45197 * 1 3 3 C 1.34739 * 117.00131 * 2 1 4 4 O 1.21499 * 120.00068 * 0.02562 * 3 2 1 5 5 C 1.47515 * 119.99953 * 180.02562 * 3 2 1 6 6 C 1.39569 * 120.21630 * 357.55763 * 5 3 2 7 7 C 1.37913 * 119.96519 * 179.97438 * 6 5 3 8 8 C 1.38527 * 120.40124 * 359.97438 * 7 6 5 9 9 C 1.38063 * 120.43249 * 0.25569 * 8 7 6 10 10 C 1.50696 * 119.98322 * 179.74678 * 9 8 7 11 11 N 1.46902 * 109.47497 * 105.84680 * 10 9 8 12 12 C 1.46901 * 110.99716 * 295.32752 * 11 10 9 13 13 C 1.46889 * 111.00357 * 171.37168 * 11 10 9 14 14 H 1.09007 * 109.47642 * 59.99425 * 13 11 10 15 15 C 1.53011 * 109.47015 * 300.00071 * 13 11 10 16 16 C 1.50697 * 109.47615 * 180.02562 * 13 11 10 17 17 H 1.08007 * 119.99511 * 359.97438 * 16 13 11 18 18 C 1.37870 * 120.00704 * 180.02562 * 16 13 11 19 19 N 1.31521 * 119.99385 * 359.97438 * 18 16 13 20 20 Si 1.86794 * 120.00428 * 179.97438 * 18 16 13 21 21 H 1.48500 * 109.47259 * 59.99647 * 20 18 16 22 22 H 1.48501 * 109.47413 * 179.97438 * 20 18 16 23 23 H 1.48500 * 109.47012 * 299.99884 * 20 18 16 24 24 C 1.39152 * 120.02643 * 359.48892 * 9 8 7 25 25 C 1.48271 * 120.19708 * 180.25277 * 24 9 8 26 26 N 1.34117 * 126.68542 * 303.32859 * 25 24 9 27 27 N 1.28985 * 107.26109 * 179.97438 * 26 25 24 28 28 N 1.28731 * 108.96138 * 359.97438 * 27 26 25 29 29 H 0.97000 * 125.32929 * 180.02562 * 28 27 26 30 30 N 1.28870 * 109.33795 * 359.75521 * 28 27 26 31 31 H 1.08996 * 109.47512 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.47030 * 299.99843 * 1 2 3 33 33 H 1.09000 * 109.47515 * 59.99800 * 1 2 3 34 34 H 1.08004 * 120.01593 * 359.95486 * 6 5 3 35 35 H 1.07995 * 119.80432 * 179.97438 * 7 6 5 36 36 H 1.07992 * 119.78455 * 179.97438 * 8 7 6 37 37 H 1.09009 * 109.46870 * 225.84742 * 10 9 8 38 38 H 1.09003 * 109.47381 * 345.84261 * 10 9 8 39 39 H 1.08998 * 109.47271 * 64.11552 * 12 11 10 40 40 H 1.08999 * 109.47197 * 184.12244 * 12 11 10 41 41 H 1.09011 * 109.46874 * 304.11887 * 12 11 10 42 42 H 1.08996 * 109.46990 * 59.99799 * 15 13 11 43 43 H 1.09001 * 109.46739 * 179.97438 * 15 13 11 44 44 H 1.09001 * 109.46815 * 299.99560 * 15 13 11 45 45 H 0.97004 * 119.99777 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0637 1.2005 0.0000 4 8 1.4020 2.2195 0.0005 5 6 3.5368 1.2777 -0.0006 6 6 4.3013 0.1111 0.0503 7 6 5.6782 0.1892 0.0490 8 6 6.3104 1.4207 -0.0032 9 6 5.5704 2.5854 -0.0491 10 6 6.2686 3.9198 -0.0999 11 7 6.1621 4.4771 -1.4549 12 6 6.8777 3.6393 -2.4264 13 6 6.6495 5.8622 -1.4943 14 1 7.6950 5.8885 -1.1868 15 6 5.8164 6.7234 -0.5427 16 6 6.5243 6.3992 -2.8968 17 1 6.1230 5.7738 -3.6806 18 6 6.9228 7.6884 -3.1796 19 7 7.4118 8.4498 -2.2252 20 14 6.7681 8.3537 -4.9182 21 1 5.3438 8.3185 -5.3369 22 1 7.2608 9.7540 -4.9581 23 1 7.5763 7.5176 -5.8418 24 6 4.1801 2.5272 -0.0540 25 6 3.3816 3.7753 -0.1090 26 7 3.4434 4.8044 0.7489 27 7 2.5920 5.6872 0.3495 28 7 2.0079 5.2544 -0.7129 29 1 1.3246 5.7301 -1.2107 30 7 2.4770 4.0927 -1.0147 31 1 -0.3634 -1.0276 -0.0005 32 1 -0.3633 0.5138 0.8900 33 1 -0.3634 0.5139 -0.8899 34 1 3.8148 -0.8523 0.0910 35 1 6.2672 -0.7151 0.0888 36 1 7.3892 1.4703 -0.0033 37 1 5.8016 4.6015 0.6112 38 1 7.3197 3.7900 0.1580 39 1 6.4040 2.6591 -2.4794 40 1 6.8449 4.1123 -3.4079 41 1 7.9154 3.5249 -2.1127 42 1 5.9066 6.3352 0.4717 43 1 6.1784 7.7511 -0.5717 44 1 4.7710 6.6972 -0.8502 45 1 7.6919 9.3569 -2.4241 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001591301011.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:04:56 Heat of formation + Delta-G solvation = 95.271204 kcal Electronic energy + Delta-G solvation = -31643.008758 eV Core-core repulsion = 27472.064382 eV Total energy + Delta-G solvation = -4170.944375 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -43.73618 -40.63733 -39.20811 -36.83381 -36.43967 -33.84014 -33.16690 -32.92530 -31.66908 -30.57173 -29.01976 -27.99432 -26.89786 -24.84403 -24.68468 -23.85384 -23.56798 -22.79953 -20.95235 -20.69718 -19.36729 -18.64828 -17.60141 -17.12302 -16.49906 -16.42556 -16.26373 -16.16968 -15.31591 -15.11975 -14.61683 -14.15498 -13.97234 -13.74688 -13.55285 -13.48074 -13.36783 -12.67501 -12.44311 -12.40303 -12.29378 -12.02198 -11.73130 -11.62102 -11.35855 -11.12477 -11.00013 -10.92803 -10.79676 -10.73324 -10.58793 -10.52762 -10.46115 -10.06506 -9.98029 -9.85938 -9.71597 -9.03910 -8.88015 -8.63654 -8.39032 -7.19171 -6.00359 -4.05059 0.54300 1.14672 1.84891 2.51246 2.53955 2.76908 2.87137 3.30309 3.35120 3.37598 3.65192 4.09425 4.40175 4.57143 4.72992 4.81232 4.92349 5.00454 5.06381 5.17607 5.20211 5.30406 5.31951 5.38156 5.48788 5.70761 5.88973 5.92620 6.12290 6.16269 6.18590 6.21058 6.31132 6.34738 6.38440 6.56543 6.71434 6.80157 6.95113 6.99594 7.14175 7.19971 7.54871 7.68654 7.74600 7.82966 8.22171 8.33708 8.59135 8.82109 9.00648 9.59400 11.06117 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.014022 B = 0.003858 C = 0.003439 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1996.348723 B = 7256.603451 C = 8140.270250 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.039 3.961 2 O -0.357 6.357 3 C 0.507 3.493 4 O -0.488 6.488 5 C -0.104 4.104 6 C -0.072 4.072 7 C -0.120 4.120 8 C -0.081 4.081 9 C -0.038 4.038 10 C 0.073 3.927 11 N -0.529 5.529 12 C 0.035 3.965 13 C 0.214 3.786 14 H -0.002 1.002 15 C -0.125 4.125 16 C -0.504 4.504 17 H 0.061 0.939 18 C 0.061 3.939 19 N -0.891 5.891 20 Si 0.895 3.105 21 H -0.278 1.278 22 H -0.288 1.288 23 H -0.278 1.278 24 C 0.077 3.923 25 C 0.231 3.769 26 N -0.260 5.260 27 N -0.056 5.056 28 N -0.227 5.227 29 H 0.469 0.531 30 N -0.252 5.252 31 H 0.100 0.900 32 H 0.061 0.939 33 H 0.063 0.937 34 H 0.140 0.860 35 H 0.134 0.866 36 H 0.134 0.866 37 H 0.103 0.897 38 H 0.037 0.963 39 H 0.042 0.958 40 H 0.078 0.922 41 H 0.011 0.989 42 H 0.012 0.988 43 H 0.082 0.918 44 H 0.027 0.973 45 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.174 -17.857 5.486 20.812 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 O -0.274 6.274 3 C 0.351 3.649 4 O -0.375 6.375 5 C -0.107 4.107 6 C -0.090 4.090 7 C -0.138 4.138 8 C -0.100 4.100 9 C -0.040 4.040 10 C -0.055 4.055 11 N -0.253 5.253 12 C -0.114 4.114 13 C 0.108 3.892 14 H 0.016 0.984 15 C -0.183 4.183 16 C -0.542 4.542 17 H 0.079 0.921 18 C -0.141 4.141 19 N -0.530 5.530 20 Si 0.723 3.277 21 H -0.204 1.204 22 H -0.213 1.213 23 H -0.203 1.203 24 C 0.073 3.927 25 C -0.050 4.050 26 N -0.133 5.133 27 N -0.051 5.051 28 N -0.071 5.071 29 H 0.321 0.679 30 N -0.103 5.103 31 H 0.119 0.881 32 H 0.080 0.920 33 H 0.082 0.918 34 H 0.158 0.842 35 H 0.152 0.848 36 H 0.152 0.848 37 H 0.121 0.879 38 H 0.055 0.945 39 H 0.061 0.939 40 H 0.097 0.903 41 H 0.029 0.971 42 H 0.031 0.969 43 H 0.101 0.899 44 H 0.047 0.953 45 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -10.019 -16.731 5.594 20.288 hybrid contribution 0.298 0.351 -1.313 1.391 sum -9.721 -16.380 4.282 19.523 Atomic orbital electron populations 1.23228 0.76161 1.03493 1.02588 1.86524 1.23377 1.32750 1.84729 1.21064 0.89045 0.81505 0.73286 1.90882 1.66584 1.35579 1.44417 1.18944 0.89105 0.93669 1.08995 1.21278 0.93864 0.97226 0.96655 1.21187 0.94162 0.98018 1.00443 1.21344 1.00581 0.91366 0.96667 1.20037 0.91209 0.96727 0.96050 1.21336 0.97412 0.91687 0.95017 1.62178 1.56913 1.04372 1.01855 1.22265 0.94442 0.96184 0.98497 1.19253 0.92393 0.81417 0.96099 0.98409 1.21778 0.98810 1.02805 0.94880 1.21081 1.41481 0.97886 0.93773 0.92102 1.24907 0.95286 0.96840 0.97055 1.69894 1.42773 1.08545 1.31773 0.86616 0.78365 0.77881 0.84835 1.20415 1.21327 1.20340 1.16961 0.91082 0.86524 0.98149 1.22679 0.95641 0.95752 0.90924 1.75971 1.14550 0.98976 1.23849 1.78757 1.05028 1.20909 1.00429 1.47474 1.29279 1.11363 1.19028 0.67901 1.74896 1.12069 0.99244 1.24061 0.88116 0.92040 0.91832 0.84186 0.84803 0.84778 0.87949 0.94492 0.93922 0.90311 0.97086 0.96862 0.89931 0.95336 0.92942 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.33 10.57 101.05 1.07 1.40 16 2 O -0.36 -4.13 9.82 -40.60 -0.40 -4.53 16 3 C 0.51 7.36 7.87 34.51 0.27 7.64 16 4 O -0.49 -8.25 12.70 -19.27 -0.24 -8.49 16 5 C -0.10 -1.49 5.90 -104.72 -0.62 -2.11 16 6 C -0.07 -0.78 9.61 -39.20 -0.38 -1.15 16 7 C -0.12 -1.18 10.02 -39.59 -0.40 -1.57 16 8 C -0.08 -0.98 9.28 -39.54 -0.37 -1.34 16 9 C -0.04 -0.60 4.37 -104.35 -0.46 -1.06 16 10 C 0.07 1.37 4.25 -4.98 -0.02 1.35 16 11 N -0.53 -11.41 4.47 -237.72 -1.06 -12.47 16 12 C 0.03 0.68 9.05 60.07 0.54 1.23 16 13 C 0.21 5.44 2.06 -68.87 -0.14 5.30 16 14 H 0.00 -0.05 8.14 -51.93 -0.42 -0.47 16 15 C -0.12 -3.15 8.76 37.16 0.33 -2.83 16 16 C -0.50 -13.83 7.82 -34.44 -0.27 -14.10 16 17 H 0.06 1.68 6.43 -52.48 -0.34 1.34 16 18 C 0.06 1.68 5.30 -17.82 -0.09 1.58 16 19 N -0.89 -25.58 11.32 55.43 0.63 -24.96 16 20 Si 0.89 21.51 29.54 -169.99 -5.02 16.49 16 21 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 22 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 23 H -0.28 -6.58 7.11 56.52 0.40 -6.17 16 24 C 0.08 1.29 5.91 -104.53 -0.62 0.67 16 25 C 0.23 4.37 5.22 -156.26 -0.82 3.55 16 26 N -0.26 -5.13 11.20 32.13 0.36 -4.77 16 27 N -0.06 -1.04 13.19 60.35 0.80 -0.25 16 28 N -0.23 -3.72 7.90 60.35 0.48 -3.25 16 29 H 0.47 5.53 8.96 -340.35 -3.05 2.48 16 30 N -0.25 -4.65 10.28 32.15 0.33 -4.32 16 31 H 0.10 0.53 8.14 -51.93 -0.42 0.10 16 32 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 33 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 34 H 0.14 1.16 7.61 -52.48 -0.40 0.76 16 35 H 0.13 0.87 8.06 -52.49 -0.42 0.45 16 36 H 0.13 1.37 7.98 -52.49 -0.42 0.95 16 37 H 0.10 2.08 4.39 -51.92 -0.23 1.85 16 38 H 0.04 0.65 7.90 -51.93 -0.41 0.24 16 39 H 0.04 0.74 7.12 -51.93 -0.37 0.37 16 40 H 0.08 1.69 5.98 -51.93 -0.31 1.38 16 41 H 0.01 0.20 8.11 -51.92 -0.42 -0.22 16 42 H 0.01 0.30 6.22 -51.93 -0.32 -0.02 16 43 H 0.08 2.29 6.07 -51.93 -0.32 1.98 16 44 H 0.03 0.72 7.86 -51.93 -0.41 0.31 16 45 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 LS Contribution 371.30 15.07 5.60 5.60 Total: -1.00 -33.98 371.30 -8.75 -42.72 By element: Atomic # 1 Polarization: 7.92 SS G_CDS: -8.24 Total: -0.32 kcal Atomic # 6 Polarization: 0.51 SS G_CDS: -1.97 Total: -1.45 kcal Atomic # 7 Polarization: -51.54 SS G_CDS: 1.53 Total: -50.01 kcal Atomic # 8 Polarization: -12.38 SS G_CDS: -0.64 Total: -13.02 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.02 Total: 16.49 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -33.98 -8.75 -42.72 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001591301011.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 137.994 kcal (2) G-P(sol) polarization free energy of solvation -33.976 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 104.018 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.747 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.723 kcal (6) G-S(sol) free energy of system = (1) + (5) 95.271 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds