Wall clock time and date at job start Wed Apr 1 2020 04:04:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45197 * 1 3 3 C 1.34739 * 117.00131 * 2 1 4 4 O 1.21499 * 120.00068 * 0.02562 * 3 2 1 5 5 C 1.47515 * 119.99953 * 180.02562 * 3 2 1 6 6 C 1.39569 * 120.21630 * 357.55763 * 5 3 2 7 7 C 1.37913 * 119.96519 * 179.97438 * 6 5 3 8 8 C 1.38527 * 120.40124 * 359.97438 * 7 6 5 9 9 C 1.38063 * 120.43249 * 0.25569 * 8 7 6 10 10 C 1.50696 * 119.98322 * 179.74678 * 9 8 7 11 11 N 1.46902 * 109.47497 * 105.84680 * 10 9 8 12 12 C 1.46901 * 110.99716 * 295.32752 * 11 10 9 13 13 C 1.46889 * 111.00357 * 171.37168 * 11 10 9 14 14 H 1.09007 * 109.47642 * 59.99425 * 13 11 10 15 15 C 1.53011 * 109.47015 * 300.00071 * 13 11 10 16 16 C 1.50697 * 109.47615 * 180.02562 * 13 11 10 17 17 H 1.08007 * 119.99511 * 359.97438 * 16 13 11 18 18 C 1.37870 * 120.00704 * 180.02562 * 16 13 11 19 19 N 1.31521 * 119.99385 * 359.97438 * 18 16 13 20 20 Si 1.86794 * 120.00428 * 179.97438 * 18 16 13 21 21 H 1.48500 * 109.47259 * 59.99647 * 20 18 16 22 22 H 1.48501 * 109.47413 * 179.97438 * 20 18 16 23 23 H 1.48500 * 109.47012 * 299.99884 * 20 18 16 24 24 C 1.39152 * 120.02643 * 359.48892 * 9 8 7 25 25 C 1.48271 * 120.19708 * 180.25277 * 24 9 8 26 26 N 1.34117 * 126.68542 * 303.32859 * 25 24 9 27 27 N 1.28985 * 107.26109 * 179.97438 * 26 25 24 28 28 N 1.28731 * 108.96138 * 359.97438 * 27 26 25 29 29 H 0.97000 * 125.32929 * 180.02562 * 28 27 26 30 30 N 1.28870 * 109.33795 * 359.75521 * 28 27 26 31 31 H 1.08996 * 109.47512 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.47030 * 299.99843 * 1 2 3 33 33 H 1.09000 * 109.47515 * 59.99800 * 1 2 3 34 34 H 1.08004 * 120.01593 * 359.95486 * 6 5 3 35 35 H 1.07995 * 119.80432 * 179.97438 * 7 6 5 36 36 H 1.07992 * 119.78455 * 179.97438 * 8 7 6 37 37 H 1.09009 * 109.46870 * 225.84742 * 10 9 8 38 38 H 1.09003 * 109.47381 * 345.84261 * 10 9 8 39 39 H 1.08998 * 109.47271 * 64.11552 * 12 11 10 40 40 H 1.08999 * 109.47197 * 184.12244 * 12 11 10 41 41 H 1.09011 * 109.46874 * 304.11887 * 12 11 10 42 42 H 1.08996 * 109.46990 * 59.99799 * 15 13 11 43 43 H 1.09001 * 109.46739 * 179.97438 * 15 13 11 44 44 H 1.09001 * 109.46815 * 299.99560 * 15 13 11 45 45 H 0.97004 * 119.99777 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0637 1.2005 0.0000 4 8 1.4020 2.2195 0.0005 5 6 3.5368 1.2777 -0.0006 6 6 4.3013 0.1111 0.0503 7 6 5.6782 0.1892 0.0490 8 6 6.3104 1.4207 -0.0032 9 6 5.5704 2.5854 -0.0491 10 6 6.2686 3.9198 -0.0999 11 7 6.1621 4.4771 -1.4549 12 6 6.8777 3.6393 -2.4264 13 6 6.6495 5.8622 -1.4943 14 1 7.6950 5.8885 -1.1868 15 6 5.8164 6.7234 -0.5427 16 6 6.5243 6.3992 -2.8968 17 1 6.1230 5.7738 -3.6806 18 6 6.9228 7.6884 -3.1796 19 7 7.4118 8.4498 -2.2252 20 14 6.7681 8.3537 -4.9182 21 1 5.3438 8.3185 -5.3369 22 1 7.2608 9.7540 -4.9581 23 1 7.5763 7.5176 -5.8418 24 6 4.1801 2.5272 -0.0540 25 6 3.3816 3.7753 -0.1090 26 7 3.4434 4.8044 0.7489 27 7 2.5920 5.6872 0.3495 28 7 2.0079 5.2544 -0.7129 29 1 1.3246 5.7301 -1.2107 30 7 2.4770 4.0927 -1.0147 31 1 -0.3634 -1.0276 -0.0005 32 1 -0.3633 0.5138 0.8900 33 1 -0.3634 0.5139 -0.8899 34 1 3.8148 -0.8523 0.0910 35 1 6.2672 -0.7151 0.0888 36 1 7.3892 1.4703 -0.0033 37 1 5.8016 4.6015 0.6112 38 1 7.3197 3.7900 0.1580 39 1 6.4040 2.6591 -2.4794 40 1 6.8449 4.1123 -3.4079 41 1 7.9154 3.5249 -2.1127 42 1 5.9066 6.3352 0.4717 43 1 6.1784 7.7511 -0.5717 44 1 4.7710 6.6972 -0.8502 45 1 7.6919 9.3569 -2.4241 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001591301011.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:04:55 Heat of formation + Delta-G solvation = 71.436129 kcal Electronic energy + Delta-G solvation = -31644.042324 eV Core-core repulsion = 27472.064382 eV Total energy + Delta-G solvation = -4171.977942 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -45.10678 -41.65428 -40.30399 -38.42420 -37.47371 -35.22663 -34.93784 -34.25910 -33.02084 -31.74343 -30.90777 -28.92275 -28.33511 -26.62618 -25.93741 -25.30974 -24.90521 -24.16858 -22.27891 -21.74239 -21.10230 -19.96465 -18.72552 -18.32638 -18.06640 -17.79979 -17.37591 -17.24076 -17.11259 -16.32430 -15.93252 -15.71230 -15.36900 -15.14490 -14.82212 -14.65353 -14.46354 -14.22817 -14.05342 -13.57013 -13.47712 -13.24297 -13.02955 -12.97069 -12.84689 -12.75442 -12.66579 -12.57506 -12.28629 -12.17665 -11.96666 -11.94452 -11.91714 -11.87520 -11.77294 -11.54839 -11.00169 -10.90223 -10.54835 -10.00434 -9.73382 -8.92154 -8.13010 -6.25014 -0.47235 0.13970 0.45952 1.38084 1.39531 1.41184 1.47266 1.50122 1.63456 1.68805 2.38597 2.65166 2.88873 3.14824 3.41983 3.65249 3.70890 3.79076 4.01921 4.27040 4.31296 4.32725 4.35074 4.35949 4.51426 4.54994 4.67367 4.72012 4.74476 4.78258 4.82832 4.90300 5.00616 5.05564 5.11933 5.21003 5.23173 5.27852 5.38590 5.47539 5.49020 5.68577 5.76485 5.79617 5.82690 6.22961 6.39228 6.68012 6.71055 6.89664 7.42943 7.43692 8.92612 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.014022 B = 0.003858 C = 0.003439 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1996.348723 B = 7256.603451 C = 8140.270250 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.349 6.349 3 C 0.504 3.496 4 O -0.522 6.522 5 C -0.120 4.120 6 C -0.053 4.053 7 C -0.097 4.097 8 C -0.074 4.074 9 C -0.058 4.058 10 C 0.078 3.922 11 N -0.536 5.536 12 C 0.042 3.958 13 C 0.222 3.778 14 H -0.035 1.035 15 C -0.102 4.102 16 C -0.517 4.517 17 H 0.056 0.944 18 C 0.014 3.986 19 N -0.919 5.919 20 Si 0.957 3.043 21 H -0.276 1.276 22 H -0.283 1.283 23 H -0.269 1.269 24 C 0.044 3.956 25 C 0.230 3.770 26 N -0.287 5.287 27 N -0.071 5.071 28 N -0.213 5.213 29 H 0.483 0.517 30 N -0.267 5.267 31 H 0.140 0.860 32 H 0.057 0.943 33 H 0.057 0.943 34 H 0.173 0.827 35 H 0.183 0.817 36 H 0.156 0.844 37 H 0.078 0.922 38 H 0.045 0.955 39 H 0.069 0.931 40 H 0.055 0.945 41 H 0.018 0.982 42 H 0.021 0.979 43 H 0.054 0.946 44 H 0.018 0.982 45 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.997 -21.523 4.862 23.829 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.266 6.266 3 C 0.350 3.650 4 O -0.412 6.412 5 C -0.122 4.122 6 C -0.071 4.071 7 C -0.115 4.115 8 C -0.093 4.093 9 C -0.060 4.060 10 C -0.049 4.049 11 N -0.260 5.260 12 C -0.107 4.107 13 C 0.116 3.884 14 H -0.017 1.017 15 C -0.161 4.161 16 C -0.555 4.555 17 H 0.074 0.926 18 C -0.185 4.185 19 N -0.558 5.558 20 Si 0.783 3.217 21 H -0.202 1.202 22 H -0.209 1.209 23 H -0.194 1.194 24 C 0.040 3.960 25 C -0.051 4.051 26 N -0.160 5.160 27 N -0.066 5.066 28 N -0.061 5.061 29 H 0.339 0.661 30 N -0.119 5.119 31 H 0.158 0.842 32 H 0.075 0.925 33 H 0.076 0.924 34 H 0.191 0.809 35 H 0.200 0.800 36 H 0.174 0.826 37 H 0.097 0.903 38 H 0.063 0.937 39 H 0.087 0.913 40 H 0.074 0.926 41 H 0.037 0.963 42 H 0.040 0.960 43 H 0.073 0.927 44 H 0.037 0.963 45 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -9.855 -20.427 4.972 23.218 hybrid contribution 0.188 1.336 -1.071 1.722 sum -9.667 -19.091 3.901 21.751 Atomic orbital electron populations 1.23534 0.74459 1.05879 1.02139 1.86506 1.24966 1.31033 1.84065 1.21271 0.89390 0.81806 0.72537 1.90865 1.67326 1.36840 1.46138 1.19096 0.89314 0.93929 1.09908 1.21723 0.94311 0.97150 0.93943 1.21681 0.93924 0.98646 0.97243 1.21635 1.01560 0.90867 0.95200 1.19806 0.90972 0.96296 0.98946 1.21213 0.98016 0.93122 0.92582 1.62059 1.56948 1.02891 1.04113 1.22198 0.95053 0.96672 0.96728 1.18975 0.90439 0.84013 0.95001 1.01738 1.21500 0.97837 1.01213 0.95520 1.21330 1.41375 0.98201 0.94625 0.92600 1.25677 0.94936 0.97107 1.00803 1.70029 1.43444 1.08736 1.33610 0.85629 0.78366 0.77348 0.80375 1.20180 1.20889 1.19367 1.17175 0.91477 0.86631 1.00684 1.23183 0.95423 0.96259 0.90236 1.75928 1.15368 0.99783 1.24910 1.78669 1.05479 1.21209 1.01220 1.47525 1.29020 1.10998 1.18544 0.66107 1.74850 1.12689 0.99790 1.24588 0.84237 0.92453 0.92432 0.80930 0.80012 0.82619 0.90336 0.93722 0.91265 0.92602 0.96305 0.96026 0.92692 0.96301 0.92960 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.49 10.57 113.37 1.20 1.69 16 2 O -0.35 -7.27 9.82 -56.50 -0.55 -7.82 16 3 C 0.50 14.11 7.87 70.27 0.55 14.66 16 4 O -0.52 -17.82 12.70 19.84 0.25 -17.57 16 5 C -0.12 -3.19 5.90 -19.92 -0.12 -3.31 16 6 C -0.05 -0.91 9.61 22.51 0.22 -0.69 16 7 C -0.10 -1.37 10.02 22.26 0.22 -1.15 16 8 C -0.07 -1.51 9.28 22.30 0.21 -1.31 16 9 C -0.06 -1.76 4.37 -19.69 -0.09 -1.84 16 10 C 0.08 2.94 4.25 85.56 0.36 3.30 16 11 N -0.54 -23.45 4.47 -906.01 -4.05 -27.50 16 12 C 0.04 1.62 9.05 127.69 1.16 2.77 16 13 C 0.22 11.70 2.06 44.17 0.09 11.79 16 14 H -0.03 -2.02 8.14 -2.38 -0.02 -2.04 16 15 C -0.10 -5.43 8.76 71.99 0.63 -4.80 16 16 C -0.52 -29.07 7.82 25.60 0.20 -28.87 16 17 H 0.06 3.14 6.43 -2.91 -0.02 3.12 16 18 C 0.01 0.77 5.30 84.65 0.45 1.21 16 19 N -0.92 -54.15 11.32 21.45 0.24 -53.91 16 20 Si 0.96 44.57 29.54 68.60 2.03 46.59 16 21 H -0.28 -12.69 7.11 99.48 0.71 -11.99 16 22 H -0.28 -12.92 7.11 99.48 0.71 -12.21 16 23 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 24 C 0.04 1.46 5.91 -19.80 -0.12 1.34 16 25 C 0.23 8.89 5.22 137.28 0.72 9.61 16 26 N -0.29 -11.81 11.20 -52.25 -0.59 -12.39 16 27 N -0.07 -2.75 13.19 37.02 0.49 -2.27 16 28 N -0.21 -7.27 7.90 37.02 0.29 -6.97 16 29 H 0.48 11.98 8.96 -347.52 -3.12 8.86 16 30 N -0.27 -10.17 10.28 -52.20 -0.54 -10.70 16 31 H 0.14 0.98 8.14 -2.39 -0.02 0.96 16 32 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 33 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 34 H 0.17 1.85 7.61 -2.91 -0.02 1.82 16 35 H 0.18 0.95 8.06 -2.91 -0.02 0.93 16 36 H 0.16 2.49 7.98 -2.91 -0.02 2.47 16 37 H 0.08 3.31 4.39 -2.38 -0.01 3.30 16 38 H 0.04 1.57 7.90 -2.39 -0.02 1.55 16 39 H 0.07 2.29 7.12 -2.39 -0.02 2.27 16 40 H 0.06 2.40 5.98 -2.39 -0.01 2.39 16 41 H 0.02 0.68 8.11 -2.38 -0.02 0.66 16 42 H 0.02 1.06 6.22 -2.39 -0.01 1.04 16 43 H 0.05 3.19 6.07 -2.39 -0.01 3.17 16 44 H 0.02 0.98 7.86 -2.39 -0.02 0.96 16 45 H 0.26 14.69 8.31 -92.70 -0.77 13.92 16 Total: -1.00 -77.63 371.30 1.20 -76.42 By element: Atomic # 1 Polarization: 13.75 SS G_CDS: -2.06 Total: 11.69 kcal Atomic # 6 Polarization: -1.26 SS G_CDS: 5.68 Total: 4.43 kcal Atomic # 7 Polarization: -109.60 SS G_CDS: -4.15 Total: -113.74 kcal Atomic # 8 Polarization: -25.09 SS G_CDS: -0.30 Total: -25.39 kcal Atomic # 14 Polarization: 44.57 SS G_CDS: 2.03 Total: 46.59 kcal Total: -77.63 1.20 -76.42 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001591301011.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 147.858 kcal (2) G-P(sol) polarization free energy of solvation -77.625 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.233 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.203 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.422 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.436 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds