Wall clock time and date at job start Wed Apr 1 2020 04:04:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42897 * 114.00183 * 2 1 4 4 C 1.52995 * 109.47635 * 180.02562 * 3 2 1 5 5 N 1.46495 * 109.47198 * 64.99582 * 4 3 2 6 6 C 1.34776 * 120.00012 * 263.87635 * 5 4 3 7 7 O 1.21293 * 119.99669 * 184.91732 * 6 5 4 8 8 C 1.50700 * 120.00443 * 4.91860 * 6 5 4 9 9 H 1.09002 * 109.46546 * 37.49463 * 8 6 5 10 10 C 1.52991 * 109.47032 * 277.49655 * 8 6 5 11 11 C 1.50697 * 109.47320 * 157.49357 * 8 6 5 12 12 H 1.08004 * 119.99831 * 0.02562 * 11 8 6 13 13 C 1.37872 * 120.00156 * 180.02562 * 11 8 6 14 14 N 1.31521 * 119.99744 * 359.97438 * 13 11 8 15 15 Si 1.86798 * 120.00279 * 180.02562 * 13 11 8 16 16 H 1.48497 * 109.47071 * 59.99737 * 15 13 11 17 17 H 1.48495 * 109.47434 * 179.97438 * 15 13 11 18 18 H 1.48498 * 109.47218 * 299.99808 * 15 13 11 19 19 C 1.39823 * 119.99832 * 83.87994 * 5 4 3 20 20 C 1.38977 * 119.95280 * 172.49633 * 19 5 4 21 21 C 1.37878 * 120.04360 * 179.97438 * 20 19 5 22 22 C 1.39361 * 119.95557 * 0.02994 * 21 20 19 23 23 C 1.48420 * 120.04540 * 180.02562 * 22 21 20 24 24 N 1.34062 * 126.67808 * 0.02562 * 23 22 21 25 25 N 1.28991 * 107.26566 * 179.97438 * 24 23 22 26 26 N 1.28722 * 108.94963 * 0.02562 * 25 24 23 27 27 H 0.96998 * 125.34401 * 179.97438 * 26 25 24 28 28 N 1.28876 * 109.32218 * 0.02562 * 26 25 24 29 29 C 1.39361 * 119.90682 * 0.26788 * 22 21 20 30 30 C 1.37880 * 119.95054 * 359.40469 * 29 22 21 31 31 H 1.08999 * 109.47538 * 299.99915 * 1 2 3 32 32 H 1.09007 * 109.47021 * 60.00321 * 1 2 3 33 33 H 1.09002 * 109.47130 * 179.97438 * 1 2 3 34 34 H 1.09001 * 109.47121 * 59.99757 * 3 2 1 35 35 H 1.09000 * 109.46978 * 299.99944 * 3 2 1 36 36 H 1.09004 * 109.46788 * 304.99734 * 4 3 2 37 37 H 1.08998 * 109.47711 * 185.00012 * 4 3 2 38 38 H 1.09004 * 109.46934 * 184.34937 * 10 8 6 39 39 H 1.09002 * 109.47533 * 304.35399 * 10 8 6 40 40 H 1.09008 * 109.47403 * 64.35345 * 10 8 6 41 41 H 0.96997 * 119.99549 * 180.02562 * 14 13 11 42 42 H 1.07995 * 119.97870 * 359.97438 * 20 19 5 43 43 H 1.08004 * 120.01862 * 180.02562 * 21 20 19 44 44 H 1.08000 * 120.02178 * 179.70920 * 29 22 21 45 45 H 1.07998 * 119.97859 * 180.29481 * 30 29 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1847 -0.0006 5 7 3.9756 0.5644 -1.2527 6 6 4.2138 -0.7613 -1.3006 7 8 4.6632 -1.2605 -2.3106 8 6 3.9217 -1.6234 -0.0996 9 1 3.0127 -1.2711 0.3880 10 6 5.0917 -1.5423 0.8829 11 6 3.7340 -3.0521 -0.5404 12 1 3.8182 -3.3102 -1.5858 13 6 3.4547 -4.0298 0.3907 14 7 3.3527 -3.7156 1.6637 15 14 3.2227 -5.8010 -0.1556 16 1 4.4616 -6.2807 -0.8190 17 1 2.9348 -6.6505 1.0279 18 1 2.0878 -5.8800 -1.1100 19 6 4.1488 1.3478 -2.3978 20 6 4.7136 0.7922 -3.5397 21 6 4.8847 1.5628 -4.6701 22 6 4.4916 2.8998 -4.6670 23 6 4.6744 3.7310 -5.8830 24 7 5.1996 3.3359 -7.0515 25 7 5.1788 4.3534 -7.8440 26 7 4.6670 5.3574 -7.2220 27 1 4.5388 6.2432 -7.5960 28 7 4.3527 5.0016 -6.0239 29 6 3.9312 3.4566 -3.5189 30 6 3.7556 2.6807 -2.3928 31 1 -0.3634 0.5138 0.8900 32 1 -0.3633 0.5138 -0.8901 33 1 -0.3633 -1.0277 -0.0005 34 1 1.6886 1.8464 0.8900 35 1 1.6886 1.8463 -0.8900 36 1 3.8514 0.5683 0.8410 37 1 3.9785 2.1765 0.0889 38 1 4.9157 -2.2247 1.7145 39 1 6.0141 -1.8208 0.3733 40 1 5.1788 -0.5236 1.2611 41 1 3.1566 -4.4035 2.3188 42 1 5.0186 -0.2438 -3.5416 43 1 5.3233 1.1305 -5.5574 44 1 3.6302 4.4937 -3.5129 45 1 3.3170 3.1104 -1.5044 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001591419102.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:04:40 Heat of formation + Delta-G solvation = 94.893894 kcal Electronic energy + Delta-G solvation = -30394.137855 eV Core-core repulsion = 26223.177119 eV Total energy + Delta-G solvation = -4170.960737 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -44.49745 -40.53691 -38.22287 -37.55808 -35.39843 -34.36717 -33.95346 -33.22569 -31.00043 -30.74451 -29.92037 -28.73873 -26.10912 -25.20414 -24.88358 -24.50660 -23.20051 -22.58457 -21.94945 -21.03394 -19.26466 -18.92279 -17.30427 -17.19859 -16.92313 -16.18279 -15.93003 -15.88450 -15.60554 -14.92729 -14.67893 -14.42543 -14.10260 -13.93124 -13.80126 -13.24792 -13.11396 -12.85354 -12.73743 -12.57565 -12.35744 -12.19921 -11.93281 -11.73445 -11.45614 -11.37587 -11.28490 -11.07287 -11.05183 -10.86657 -10.86035 -10.66688 -10.50811 -10.18860 -9.97478 -9.64855 -9.39816 -8.96526 -8.79630 -8.45931 -8.16834 -7.53403 -5.99942 -4.02295 0.77804 1.17738 1.59164 2.14519 2.39330 3.22599 3.37627 3.40174 3.45590 3.49090 3.71662 3.98093 4.11543 4.18707 4.48257 4.95172 5.06013 5.14773 5.18178 5.28441 5.33996 5.37117 5.40636 5.42510 5.49111 5.56386 5.61154 5.67083 5.81736 5.88044 5.96221 6.01487 6.21709 6.30452 6.44241 6.53161 6.62611 6.70191 6.79246 6.90821 6.97029 7.38499 7.46662 7.54719 7.80403 7.85035 8.05833 8.08771 8.33763 8.97399 9.03618 9.60883 11.07352 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.015638 B = 0.002827 C = 0.002585 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1790.103556 B = 9901.870465 C =10831.205207 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.361 6.361 3 C 0.038 3.962 4 C 0.097 3.903 5 N -0.557 5.557 6 C 0.532 3.468 7 O -0.515 6.515 8 C 0.027 3.973 9 H 0.084 0.916 10 C -0.137 4.137 11 C -0.496 4.496 12 H 0.068 0.932 13 C 0.062 3.938 14 N -0.894 5.894 15 Si 0.897 3.103 16 H -0.276 1.276 17 H -0.288 1.288 18 H -0.277 1.277 19 C 0.198 3.802 20 C -0.181 4.181 21 C -0.047 4.047 22 C -0.075 4.075 23 C 0.238 3.762 24 N -0.273 5.273 25 N -0.055 5.055 26 N -0.234 5.234 27 H 0.472 0.528 28 N -0.307 5.307 29 C -0.051 4.051 30 C -0.183 4.183 31 H 0.036 0.964 32 H 0.033 0.967 33 H 0.087 0.913 34 H 0.059 0.941 35 H 0.050 0.950 36 H 0.114 0.886 37 H 0.093 0.907 38 H 0.099 0.901 39 H 0.031 0.969 40 H 0.013 0.987 41 H 0.260 0.740 42 H 0.194 0.806 43 H 0.133 0.867 44 H 0.128 0.872 45 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.136 19.451 -6.080 20.491 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.279 6.279 3 C -0.040 4.040 4 C -0.026 4.026 5 N -0.277 5.277 6 C 0.326 3.674 7 O -0.390 6.390 8 C 0.007 3.993 9 H 0.101 0.899 10 C -0.195 4.195 11 C -0.535 4.535 12 H 0.086 0.914 13 C -0.139 4.139 14 N -0.533 5.533 15 Si 0.725 3.275 16 H -0.202 1.202 17 H -0.214 1.214 18 H -0.203 1.203 19 C 0.099 3.901 20 C -0.200 4.200 21 C -0.067 4.067 22 C -0.080 4.080 23 C -0.041 4.041 24 N -0.146 5.146 25 N -0.050 5.050 26 N -0.079 5.079 27 H 0.326 0.674 28 N -0.158 5.158 29 C -0.072 4.072 30 C -0.204 4.204 31 H 0.054 0.946 32 H 0.052 0.948 33 H 0.106 0.894 34 H 0.077 0.923 35 H 0.068 0.932 36 H 0.132 0.868 37 H 0.111 0.889 38 H 0.117 0.883 39 H 0.050 0.950 40 H 0.032 0.968 41 H 0.070 0.930 42 H 0.210 0.790 43 H 0.151 0.849 44 H 0.146 0.854 45 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -1.638 18.925 -6.969 20.233 hybrid contribution -0.733 0.147 -0.070 0.751 sum -2.370 19.072 -7.039 20.467 Atomic orbital electron populations 1.22702 0.81703 1.02986 0.98846 1.88182 1.19077 1.25536 1.95111 1.22998 0.94105 0.86604 1.00321 1.21995 0.93006 1.00081 0.87485 1.46111 1.64079 1.08681 1.08855 1.22557 0.73511 0.79555 0.91748 1.90138 1.43276 1.72185 1.33417 1.19122 0.97639 0.94045 0.88540 0.89885 1.21842 0.97238 0.98584 1.01793 1.20980 1.47394 0.90509 0.94573 0.91420 1.24864 0.95258 0.98930 0.94844 1.69849 1.49438 1.33403 1.00607 0.86563 0.78816 0.84267 0.77822 1.20205 1.21422 1.20287 1.18458 0.93512 0.90519 0.87601 1.22973 1.01125 1.05091 0.90816 1.21206 0.95650 0.91314 0.98573 1.17171 1.08941 0.92847 0.89030 1.23813 0.97322 0.87986 0.94935 1.76109 1.18616 1.19182 1.00666 1.78879 1.12896 0.91408 1.21855 1.47681 1.39124 1.14429 1.06681 0.67397 1.74925 1.23438 1.15524 1.01934 1.20749 0.96135 0.99310 0.91032 1.20701 1.07241 0.92928 0.99552 0.94575 0.94836 0.89404 0.92332 0.93154 0.86780 0.88901 0.88266 0.95019 0.96819 0.92980 0.79025 0.84902 0.85362 0.85382 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.47 11.01 101.05 1.11 1.58 16 2 O -0.36 -6.22 8.05 -35.23 -0.28 -6.50 16 3 C 0.04 0.50 5.99 37.16 0.22 0.72 16 4 C 0.10 1.36 4.98 -4.05 -0.02 1.34 16 5 N -0.56 -9.84 2.66 -113.43 -0.30 -10.14 16 6 C 0.53 11.78 6.59 -10.99 -0.07 11.70 16 7 O -0.51 -12.53 12.14 5.55 0.07 -12.47 16 8 C 0.03 0.65 1.74 -92.93 -0.16 0.49 16 9 H 0.08 2.03 4.70 -51.93 -0.24 1.78 16 10 C -0.14 -3.09 8.77 37.15 0.33 -2.76 16 11 C -0.50 -13.68 8.34 -34.44 -0.29 -13.97 16 12 H 0.07 1.96 6.98 -52.48 -0.37 1.60 16 13 C 0.06 1.67 5.29 -17.82 -0.09 1.58 16 14 N -0.89 -24.38 11.30 55.43 0.63 -23.75 16 15 Si 0.90 21.49 29.54 -169.99 -5.02 16.47 16 16 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 17 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 18 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 19 C 0.20 3.26 6.47 -83.67 -0.54 2.72 16 20 C -0.18 -3.16 9.03 -39.44 -0.36 -3.51 16 21 C -0.05 -0.71 9.69 -39.30 -0.38 -1.09 16 22 C -0.07 -1.06 5.88 -104.87 -0.62 -1.67 16 23 C 0.24 3.24 7.93 -156.30 -1.24 2.00 16 24 N -0.27 -3.85 12.23 32.15 0.39 -3.45 16 25 N -0.06 -0.64 13.47 60.35 0.81 0.18 16 26 N -0.23 -2.01 7.90 60.35 0.48 -1.53 16 27 H 0.47 1.59 8.96 -340.37 -3.05 -1.46 16 28 N -0.31 -3.47 12.08 32.17 0.39 -3.08 16 29 C -0.05 -0.65 9.69 -39.29 -0.38 -1.03 16 30 C -0.18 -2.40 8.57 -39.44 -0.34 -2.74 16 31 H 0.04 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.03 0.41 8.14 -51.92 -0.42 -0.02 16 33 H 0.09 1.25 8.14 -51.93 -0.42 0.83 16 34 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 35 H 0.05 0.62 7.00 -51.93 -0.36 0.26 16 36 H 0.11 1.75 4.58 -51.93 -0.24 1.51 16 37 H 0.09 0.97 6.91 -51.93 -0.36 0.61 16 38 H 0.10 2.46 5.97 -51.93 -0.31 2.15 16 39 H 0.03 0.72 8.14 -51.93 -0.42 0.29 16 40 H 0.01 0.25 6.31 -51.92 -0.33 -0.08 16 41 H 0.26 6.83 8.31 -40.82 -0.34 6.50 16 42 H 0.19 3.88 4.52 -56.29 -0.25 3.62 16 43 H 0.13 1.92 7.88 -52.48 -0.41 1.51 16 44 H 0.13 1.35 7.88 -52.49 -0.41 0.93 16 45 H 0.13 1.34 5.79 -52.49 -0.30 1.03 16 LS Contribution 367.14 15.07 5.53 5.53 Total: -1.00 -32.97 367.14 -8.03 -41.00 By element: Atomic # 1 Polarization: 10.29 SS G_CDS: -7.89 Total: 2.40 kcal Atomic # 6 Polarization: -1.82 SS G_CDS: -2.83 Total: -4.65 kcal Atomic # 7 Polarization: -44.18 SS G_CDS: 2.40 Total: -41.79 kcal Atomic # 8 Polarization: -18.75 SS G_CDS: -0.22 Total: -18.97 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.02 Total: 16.47 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -32.97 -8.03 -41.00 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001591419102.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 135.896 kcal (2) G-P(sol) polarization free energy of solvation -32.972 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 102.924 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.030 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.002 kcal (6) G-S(sol) free energy of system = (1) + (5) 94.894 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds