Wall clock time and date at job start Wed Apr 1 2020 04:04:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42897 * 114.00183 * 2 1 4 4 C 1.52995 * 109.47635 * 180.02562 * 3 2 1 5 5 N 1.46495 * 109.47198 * 64.99582 * 4 3 2 6 6 C 1.34776 * 120.00012 * 263.87635 * 5 4 3 7 7 O 1.21293 * 119.99669 * 184.91732 * 6 5 4 8 8 C 1.50700 * 120.00443 * 4.91860 * 6 5 4 9 9 H 1.09002 * 109.46546 * 37.49463 * 8 6 5 10 10 C 1.52991 * 109.47032 * 277.49655 * 8 6 5 11 11 C 1.50697 * 109.47320 * 157.49357 * 8 6 5 12 12 H 1.08004 * 119.99831 * 0.02562 * 11 8 6 13 13 C 1.37872 * 120.00156 * 180.02562 * 11 8 6 14 14 N 1.31521 * 119.99744 * 359.97438 * 13 11 8 15 15 Si 1.86798 * 120.00279 * 180.02562 * 13 11 8 16 16 H 1.48497 * 109.47071 * 59.99737 * 15 13 11 17 17 H 1.48495 * 109.47434 * 179.97438 * 15 13 11 18 18 H 1.48498 * 109.47218 * 299.99808 * 15 13 11 19 19 C 1.39823 * 119.99832 * 83.87994 * 5 4 3 20 20 C 1.38977 * 119.95280 * 172.49633 * 19 5 4 21 21 C 1.37878 * 120.04360 * 179.97438 * 20 19 5 22 22 C 1.39361 * 119.95557 * 0.02994 * 21 20 19 23 23 C 1.48420 * 120.04540 * 180.02562 * 22 21 20 24 24 N 1.34062 * 126.67808 * 0.02562 * 23 22 21 25 25 N 1.28991 * 107.26566 * 179.97438 * 24 23 22 26 26 N 1.28722 * 108.94963 * 0.02562 * 25 24 23 27 27 H 0.96998 * 125.34401 * 179.97438 * 26 25 24 28 28 N 1.28876 * 109.32218 * 0.02562 * 26 25 24 29 29 C 1.39361 * 119.90682 * 0.26788 * 22 21 20 30 30 C 1.37880 * 119.95054 * 359.40469 * 29 22 21 31 31 H 1.08999 * 109.47538 * 299.99915 * 1 2 3 32 32 H 1.09007 * 109.47021 * 60.00321 * 1 2 3 33 33 H 1.09002 * 109.47130 * 179.97438 * 1 2 3 34 34 H 1.09001 * 109.47121 * 59.99757 * 3 2 1 35 35 H 1.09000 * 109.46978 * 299.99944 * 3 2 1 36 36 H 1.09004 * 109.46788 * 304.99734 * 4 3 2 37 37 H 1.08998 * 109.47711 * 185.00012 * 4 3 2 38 38 H 1.09004 * 109.46934 * 184.34937 * 10 8 6 39 39 H 1.09002 * 109.47533 * 304.35399 * 10 8 6 40 40 H 1.09008 * 109.47403 * 64.35345 * 10 8 6 41 41 H 0.96997 * 119.99549 * 180.02562 * 14 13 11 42 42 H 1.07995 * 119.97870 * 359.97438 * 20 19 5 43 43 H 1.08004 * 120.01862 * 180.02562 * 21 20 19 44 44 H 1.08000 * 120.02178 * 179.70920 * 29 22 21 45 45 H 1.07998 * 119.97859 * 180.29481 * 30 29 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1847 -0.0006 5 7 3.9756 0.5644 -1.2527 6 6 4.2138 -0.7613 -1.3006 7 8 4.6632 -1.2605 -2.3106 8 6 3.9217 -1.6234 -0.0996 9 1 3.0127 -1.2711 0.3880 10 6 5.0917 -1.5423 0.8829 11 6 3.7340 -3.0521 -0.5404 12 1 3.8182 -3.3102 -1.5858 13 6 3.4547 -4.0298 0.3907 14 7 3.3527 -3.7156 1.6637 15 14 3.2227 -5.8010 -0.1556 16 1 4.4616 -6.2807 -0.8190 17 1 2.9348 -6.6505 1.0279 18 1 2.0878 -5.8800 -1.1100 19 6 4.1488 1.3478 -2.3978 20 6 4.7136 0.7922 -3.5397 21 6 4.8847 1.5628 -4.6701 22 6 4.4916 2.8998 -4.6670 23 6 4.6744 3.7310 -5.8830 24 7 5.1996 3.3359 -7.0515 25 7 5.1788 4.3534 -7.8440 26 7 4.6670 5.3574 -7.2220 27 1 4.5388 6.2432 -7.5960 28 7 4.3527 5.0016 -6.0239 29 6 3.9312 3.4566 -3.5189 30 6 3.7556 2.6807 -2.3928 31 1 -0.3634 0.5138 0.8900 32 1 -0.3633 0.5138 -0.8901 33 1 -0.3633 -1.0277 -0.0005 34 1 1.6886 1.8464 0.8900 35 1 1.6886 1.8463 -0.8900 36 1 3.8514 0.5683 0.8410 37 1 3.9785 2.1765 0.0889 38 1 4.9157 -2.2247 1.7145 39 1 6.0141 -1.8208 0.3733 40 1 5.1788 -0.5236 1.2611 41 1 3.1566 -4.4035 2.3188 42 1 5.0186 -0.2438 -3.5416 43 1 5.3233 1.1305 -5.5574 44 1 3.6302 4.4937 -3.5129 45 1 3.3170 3.1104 -1.5044 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001591419102.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:04:37 Heat of formation + Delta-G solvation = 72.463408 kcal Electronic energy + Delta-G solvation = -30395.110514 eV Core-core repulsion = 26223.177119 eV Total energy + Delta-G solvation = -4171.933396 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -45.41414 -41.91685 -39.51371 -38.76749 -36.73172 -35.86188 -35.27387 -34.32198 -32.59674 -32.02439 -31.17736 -29.95653 -27.27621 -27.14452 -25.96816 -25.61275 -24.43761 -23.92199 -23.06926 -22.32795 -20.43633 -20.13927 -18.66373 -18.29253 -18.09971 -17.78002 -17.35792 -17.11418 -16.85663 -16.55406 -16.00938 -15.65513 -15.34760 -15.27704 -14.98833 -14.71093 -14.52197 -14.20924 -14.10652 -13.81658 -13.52682 -13.33569 -13.19771 -13.03434 -12.92007 -12.74707 -12.63444 -12.43649 -12.38943 -12.24992 -12.18710 -12.08435 -12.01389 -11.94314 -11.76733 -10.97523 -10.82374 -10.49015 -10.41371 -9.93199 -9.86977 -8.76937 -8.07950 -6.16027 -0.26182 0.20196 0.46935 1.26759 1.42462 1.43832 1.47203 1.51607 1.87303 1.97741 2.48444 2.73220 2.89293 3.00378 3.22042 3.23081 3.78019 4.00048 4.08271 4.15324 4.20523 4.30288 4.38633 4.44325 4.47699 4.49441 4.56361 4.59642 4.63259 4.73379 4.81636 4.90486 4.94533 5.07470 5.10859 5.14778 5.29460 5.33852 5.52278 5.60273 5.63030 5.66873 5.87805 6.00481 6.12925 6.26142 6.43686 6.51957 6.88401 7.15831 7.36911 7.49904 8.97412 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.015638 B = 0.002827 C = 0.002585 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1790.103556 B = 9901.870465 C =10831.205207 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.408 6.408 3 C 0.036 3.964 4 C 0.087 3.913 5 N -0.550 5.550 6 C 0.527 3.473 7 O -0.554 6.554 8 C 0.027 3.973 9 H 0.082 0.918 10 C -0.126 4.126 11 C -0.522 4.522 12 H 0.039 0.961 13 C 0.026 3.974 14 N -0.905 5.905 15 Si 0.946 3.054 16 H -0.280 1.280 17 H -0.274 1.274 18 H -0.278 1.278 19 C 0.174 3.826 20 C -0.204 4.204 21 C -0.053 4.053 22 C -0.071 4.071 23 C 0.222 3.778 24 N -0.304 5.304 25 N -0.060 5.060 26 N -0.200 5.200 27 H 0.494 0.506 28 N -0.294 5.294 29 C -0.041 4.041 30 C -0.161 4.161 31 H 0.061 0.939 32 H 0.046 0.954 33 H 0.069 0.931 34 H 0.095 0.905 35 H 0.063 0.937 36 H 0.098 0.902 37 H 0.139 0.861 38 H 0.076 0.924 39 H 0.016 0.984 40 H 0.051 0.949 41 H 0.263 0.737 42 H 0.159 0.841 43 H 0.129 0.871 44 H 0.161 0.839 45 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.210 23.344 -5.746 24.254 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.327 6.327 3 C -0.041 4.041 4 C -0.034 4.034 5 N -0.271 5.271 6 C 0.321 3.679 7 O -0.432 6.432 8 C 0.007 3.993 9 H 0.099 0.901 10 C -0.184 4.184 11 C -0.561 4.561 12 H 0.058 0.942 13 C -0.173 4.173 14 N -0.544 5.544 15 Si 0.773 3.227 16 H -0.206 1.206 17 H -0.199 1.199 18 H -0.203 1.203 19 C 0.077 3.923 20 C -0.224 4.224 21 C -0.074 4.074 22 C -0.075 4.075 23 C -0.058 4.058 24 N -0.177 5.177 25 N -0.054 5.054 26 N -0.051 5.051 27 H 0.353 0.647 28 N -0.146 5.146 29 C -0.061 4.061 30 C -0.182 4.182 31 H 0.079 0.921 32 H 0.065 0.935 33 H 0.088 0.912 34 H 0.113 0.887 35 H 0.081 0.919 36 H 0.116 0.884 37 H 0.157 0.843 38 H 0.095 0.905 39 H 0.035 0.965 40 H 0.069 0.931 41 H 0.073 0.927 42 H 0.175 0.825 43 H 0.147 0.853 44 H 0.179 0.821 45 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges -2.725 22.881 -6.638 23.980 hybrid contribution -0.409 -0.855 -0.300 0.994 sum -3.133 22.026 -6.938 23.304 Atomic orbital electron populations 1.22766 0.80425 1.02490 1.00695 1.88104 1.20776 1.28343 1.95499 1.23193 0.92961 0.85421 1.02561 1.22379 0.94266 1.01634 0.85090 1.45864 1.63396 1.07226 1.10578 1.22121 0.73783 0.81387 0.90609 1.90177 1.45096 1.73705 1.34265 1.18975 0.97955 0.92755 0.89653 0.90057 1.21672 0.95977 1.00275 1.00474 1.21155 1.48307 0.93181 0.93456 0.94232 1.25424 0.95009 1.01865 0.95017 1.69921 1.49332 1.34257 1.00915 0.85803 0.78361 0.80778 0.77807 1.20595 1.19921 1.20331 1.18589 0.95120 0.91878 0.86760 1.22613 1.03066 1.04040 0.92664 1.21100 0.96270 0.92208 0.97803 1.17298 1.08000 0.92173 0.90061 1.23716 0.98524 0.88736 0.94802 1.76109 1.19761 1.20482 1.01305 1.78835 1.13351 0.91615 1.21645 1.47761 1.36687 1.14954 1.05692 0.64655 1.74866 1.22765 1.14337 1.02676 1.21095 0.94615 1.00560 0.89859 1.21006 1.05299 0.90900 1.00948 0.92065 0.93495 0.91250 0.88722 0.91914 0.88418 0.84337 0.90506 0.96517 0.93058 0.92740 0.82483 0.85279 0.82099 0.81649 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.85 11.01 113.37 1.25 2.10 16 2 O -0.41 -13.72 8.05 -148.98 -1.20 -14.92 16 3 C 0.04 0.83 5.99 71.98 0.43 1.26 16 4 C 0.09 2.22 4.98 86.38 0.43 2.65 16 5 N -0.55 -19.24 2.66 -631.17 -1.68 -20.92 16 6 C 0.53 24.34 6.59 87.66 0.58 24.92 16 7 O -0.55 -29.01 12.14 -3.07 -0.04 -29.05 16 8 C 0.03 1.36 1.74 -12.29 -0.02 1.34 16 9 H 0.08 4.08 4.70 -2.39 -0.01 4.07 16 10 C -0.13 -5.83 8.77 71.98 0.63 -5.20 16 11 C -0.52 -30.25 8.34 25.60 0.21 -30.04 16 12 H 0.04 2.45 6.98 -2.91 -0.02 2.43 16 13 C 0.03 1.46 5.29 84.65 0.45 1.91 16 14 N -0.90 -50.25 11.30 21.45 0.24 -50.01 16 15 Si 0.95 45.17 29.54 68.60 2.03 47.20 16 16 H -0.28 -13.45 7.11 99.48 0.71 -12.75 16 17 H -0.27 -12.38 7.11 99.48 0.71 -11.68 16 18 H -0.28 -13.18 7.11 99.48 0.71 -12.48 16 19 C 0.17 5.58 6.47 38.22 0.25 5.83 16 20 C -0.20 -7.44 9.03 22.36 0.20 -7.24 16 21 C -0.05 -1.66 9.69 22.45 0.22 -1.44 16 22 C -0.07 -1.87 5.88 -20.02 -0.12 -1.99 16 23 C 0.22 5.56 7.93 137.36 1.09 6.65 16 24 N -0.30 -8.25 12.23 -52.20 -0.64 -8.89 16 25 N -0.06 -1.26 13.47 37.02 0.50 -0.76 16 26 N -0.20 -2.80 7.90 37.02 0.29 -2.51 16 27 H 0.49 1.51 8.96 -347.54 -3.12 -1.61 16 28 N -0.29 -5.64 12.08 -52.14 -0.63 -6.27 16 29 C -0.04 -0.87 9.69 22.46 0.22 -0.65 16 30 C -0.16 -3.63 8.57 22.36 0.19 -3.44 16 31 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 32 H 0.05 1.07 8.14 -2.38 -0.02 1.05 16 33 H 0.07 2.01 8.14 -2.39 -0.02 1.99 16 34 H 0.09 1.52 8.14 -2.39 -0.02 1.50 16 35 H 0.06 1.29 7.00 -2.39 -0.02 1.28 16 36 H 0.10 2.83 4.58 -2.38 -0.01 2.82 16 37 H 0.14 2.21 6.91 -2.39 -0.02 2.19 16 38 H 0.08 3.90 5.97 -2.39 -0.01 3.89 16 39 H 0.02 0.76 8.14 -2.39 -0.02 0.74 16 40 H 0.05 1.92 6.31 -2.38 -0.02 1.91 16 41 H 0.26 13.92 8.31 -92.71 -0.77 13.15 16 42 H 0.16 6.97 4.52 -63.06 -0.29 6.68 16 43 H 0.13 3.98 7.88 -2.91 -0.02 3.96 16 44 H 0.16 2.46 7.88 -2.91 -0.02 2.44 16 45 H 0.17 2.46 5.79 -2.91 -0.02 2.44 16 Total: -1.00 -76.76 367.14 2.57 -74.19 By element: Atomic # 1 Polarization: 17.60 SS G_CDS: -2.32 Total: 15.28 kcal Atomic # 6 Polarization: -9.35 SS G_CDS: 6.01 Total: -3.35 kcal Atomic # 7 Polarization: -87.44 SS G_CDS: -1.91 Total: -89.36 kcal Atomic # 8 Polarization: -42.73 SS G_CDS: -1.24 Total: -43.97 kcal Atomic # 14 Polarization: 45.17 SS G_CDS: 2.03 Total: 47.20 kcal Total: -76.76 2.57 -74.19 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001591419102.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 146.657 kcal (2) G-P(sol) polarization free energy of solvation -76.762 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.895 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.568 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.193 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.463 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds