Wall clock time and date at job start Wed Apr 1 2020 03:02:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45208 * 1 3 3 C 1.34218 * 116.99689 * 2 1 4 4 O 1.20825 * 120.00360 * 0.02562 * 3 2 1 5 5 C 1.50703 * 119.99856 * 180.02562 * 3 2 1 6 6 C 1.53003 * 109.47354 * 180.02562 * 5 3 2 7 7 N 1.46501 * 109.47196 * 179.97438 * 6 5 3 8 8 C 1.36936 * 120.00016 * 269.99868 * 7 6 5 9 9 H 1.07996 * 120.00178 * 322.37726 * 8 7 6 10 10 C 1.38809 * 119.99776 * 142.37319 * 8 7 6 11 11 N 1.31617 * 120.00010 * 156.98218 * 10 8 7 12 12 Si 1.86802 * 120.00075 * 336.97680 * 10 8 7 13 13 H 1.48507 * 109.46881 * 95.44384 * 12 10 8 14 14 H 1.48500 * 109.47453 * 215.44559 * 12 10 8 15 15 H 1.48497 * 109.47220 * 335.44785 * 12 10 8 16 16 C 1.46502 * 120.00009 * 90.00302 * 7 6 5 17 17 H 1.08996 * 109.46723 * 236.07233 * 16 7 6 18 18 C 1.53008 * 109.46927 * 356.06635 * 16 7 6 19 19 C 1.50694 * 109.47167 * 116.06338 * 16 7 6 20 20 C 1.38330 * 119.94731 * 313.70154 * 19 16 7 21 21 C 1.38295 * 120.24214 * 180.02562 * 20 19 16 22 22 C 1.38050 * 120.11428 * 0.02562 * 21 20 19 23 23 C 1.39280 * 119.87914 * 359.97232 * 22 21 20 24 24 C 1.48465 * 120.11402 * 179.97438 * 23 22 21 25 25 N 1.34046 * 126.67218 * 179.69320 * 24 23 22 26 26 N 1.28988 * 107.26645 * 179.83162 * 25 24 23 27 27 N 1.28730 * 108.94255 * 0.43416 * 26 25 24 28 28 H 0.97005 * 125.33850 * 179.72704 * 27 26 25 29 29 N 1.28864 * 109.31913 * 359.72166 * 27 26 25 30 30 C 1.38005 * 119.93712 * 133.71899 * 19 16 7 31 31 H 1.08994 * 109.46971 * 59.99679 * 1 2 3 32 32 H 1.09001 * 109.46611 * 179.97438 * 1 2 3 33 33 H 1.09002 * 109.46712 * 299.99418 * 1 2 3 34 34 H 1.09001 * 109.47113 * 60.00047 * 5 3 2 35 35 H 1.08997 * 109.47307 * 300.00101 * 5 3 2 36 36 H 1.09001 * 109.47056 * 59.99910 * 6 5 3 37 37 H 1.08997 * 109.46913 * 300.00240 * 6 5 3 38 38 H 0.97000 * 120.00298 * 180.02562 * 11 10 8 39 39 H 1.08999 * 109.46914 * 305.35436 * 18 16 7 40 40 H 1.08999 * 109.46955 * 65.35268 * 18 16 7 41 41 H 1.09000 * 109.46800 * 185.35744 * 18 16 7 42 42 H 1.08001 * 119.88134 * 0.04141 * 20 19 16 43 43 H 1.07994 * 119.94484 * 179.97438 * 21 20 19 44 44 H 1.08004 * 120.05764 * 179.70451 * 22 21 20 45 45 H 1.08003 * 120.06144 * 359.95770 * 30 19 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2748 -0.0006 6 6 4.0001 2.7421 0.0002 7 7 5.4631 2.8187 0.0002 8 6 6.1469 2.8540 1.1862 9 1 5.7460 3.4043 2.0245 10 6 7.3552 2.1823 1.3108 11 7 8.2226 2.5530 2.2287 12 14 7.7503 0.7522 0.1758 13 1 8.5561 1.2395 -0.9724 14 1 8.5222 -0.2736 0.9223 15 1 6.4868 0.1538 -0.3247 16 6 6.1947 2.8578 -1.2685 17 1 6.9167 2.0418 -1.2967 18 6 5.2098 2.7078 -2.4298 19 6 6.9185 4.1739 -1.3906 20 6 6.2592 5.3543 -1.0987 21 6 6.9175 6.5655 -1.2092 22 6 8.2372 6.6023 -1.6125 23 6 8.9059 5.4167 -1.9076 24 6 10.3251 5.4502 -2.3423 25 7 11.0926 4.3958 -2.6520 26 7 12.2536 4.8510 -2.9816 27 7 12.2430 6.1344 -2.8818 28 1 12.9948 6.7180 -3.0695 29 7 11.0771 6.5221 -2.4934 30 6 8.2381 4.1992 -1.7939 31 1 -0.3633 0.5139 -0.8899 32 1 -0.3632 -1.0277 -0.0005 33 1 -0.3633 0.5138 0.8901 34 1 3.9557 0.7809 -0.8908 35 1 3.9564 0.7806 0.8891 36 1 3.6108 3.2356 0.8907 37 1 3.6100 3.2367 -0.8893 38 1 9.0672 2.0839 2.3156 39 1 4.6192 1.8023 -2.2907 40 1 4.5473 3.5728 -2.4584 41 1 5.7614 2.6413 -3.3676 42 1 5.2266 5.3301 -0.7830 43 1 6.3980 7.4843 -0.9805 44 1 8.7490 7.5491 -1.7031 45 1 8.7522 3.2770 -2.0213 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001604938493.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:02:06 Heat of formation + Delta-G solvation = 94.865091 kcal Electronic energy + Delta-G solvation = -30299.185596 eV Core-core repulsion = 26128.223610 eV Total energy + Delta-G solvation = -4170.961986 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -44.28645 -40.18146 -39.13452 -36.91268 -36.11286 -34.22802 -33.39784 -32.17097 -32.12340 -30.28209 -29.69423 -28.72824 -27.56142 -24.82249 -24.45275 -24.14490 -23.35216 -21.67527 -21.44030 -20.40392 -19.43645 -18.93690 -17.48101 -17.11123 -16.98317 -16.41786 -16.21041 -16.05892 -15.50244 -14.97709 -14.47444 -14.33521 -14.10322 -13.66905 -13.48964 -13.19484 -13.04523 -12.97332 -12.80105 -12.26068 -12.18665 -12.16389 -12.02995 -11.72301 -11.47397 -11.41933 -11.30682 -11.20688 -11.01120 -10.88282 -10.69981 -10.66942 -10.60714 -10.35691 -10.12209 -10.11198 -9.93248 -9.56094 -8.50963 -8.28101 -8.05424 -6.96456 -6.02203 -3.46930 1.02763 1.44683 1.92818 2.34823 2.51787 2.71130 2.98897 3.32622 3.45895 3.48760 3.91878 4.30000 4.40937 4.50664 4.85779 5.13386 5.17421 5.19826 5.29219 5.35574 5.41491 5.45697 5.52556 5.60173 5.61888 5.63765 5.76873 5.78737 5.82043 5.95242 5.99099 6.13945 6.20010 6.35168 6.39380 6.46528 6.50288 6.54785 6.60477 6.61374 6.84054 6.87403 6.96005 7.26961 7.44912 7.98186 8.04175 8.30487 8.35632 8.90877 9.66781 10.02917 11.12665 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.015957 B = 0.003111 C = 0.002882 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1754.268609 B = 8996.985083 C = 9712.967135 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.366 6.366 3 C 0.463 3.537 4 O -0.515 6.515 5 C -0.140 4.140 6 C 0.158 3.842 7 N -0.590 5.590 8 C -0.275 4.275 9 H 0.082 0.918 10 C 0.051 3.949 11 N -0.888 5.888 12 Si 0.861 3.139 13 H -0.277 1.277 14 H -0.301 1.301 15 H -0.268 1.268 16 C 0.195 3.805 17 H 0.048 0.952 18 C -0.158 4.158 19 C -0.060 4.060 20 C -0.058 4.058 21 C -0.131 4.131 22 C -0.089 4.089 23 C -0.033 4.033 24 C 0.237 3.763 25 N -0.268 5.268 26 N -0.057 5.057 27 N -0.235 5.235 28 H 0.472 0.528 29 N -0.303 5.303 30 C -0.067 4.067 31 H 0.059 0.941 32 H 0.095 0.905 33 H 0.060 0.940 34 H 0.096 0.904 35 H 0.109 0.891 36 H 0.063 0.937 37 H 0.057 0.943 38 H 0.263 0.737 39 H 0.060 0.940 40 H 0.063 0.937 41 H 0.057 0.943 42 H 0.125 0.875 43 H 0.122 0.878 44 H 0.123 0.877 45 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.164 3.837 -10.506 11.624 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.283 6.283 3 C 0.307 3.693 4 O -0.403 6.403 5 C -0.181 4.181 6 C 0.031 3.969 7 N -0.312 5.312 8 C -0.403 4.403 9 H 0.099 0.901 10 C -0.152 4.152 11 N -0.527 5.527 12 Si 0.691 3.309 13 H -0.205 1.205 14 H -0.229 1.229 15 H -0.193 1.193 16 C 0.089 3.911 17 H 0.066 0.934 18 C -0.215 4.215 19 C -0.062 4.062 20 C -0.077 4.077 21 C -0.149 4.149 22 C -0.109 4.109 23 C -0.037 4.037 24 C -0.042 4.042 25 N -0.141 5.141 26 N -0.052 5.052 27 N -0.080 5.080 28 H 0.325 0.675 29 N -0.154 5.154 30 C -0.088 4.088 31 H 0.077 0.923 32 H 0.113 0.887 33 H 0.079 0.921 34 H 0.114 0.886 35 H 0.127 0.873 36 H 0.082 0.918 37 H 0.075 0.925 38 H 0.073 0.927 39 H 0.079 0.921 40 H 0.082 0.918 41 H 0.076 0.924 42 H 0.143 0.857 43 H 0.140 0.860 44 H 0.141 0.859 45 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -2.634 3.840 -10.593 11.571 hybrid contribution 0.517 -0.427 -0.302 0.736 sum -2.116 3.413 -10.895 11.612 Atomic orbital electron populations 1.23172 0.77467 1.03095 1.02227 1.86584 1.22709 1.34632 1.84386 1.24486 0.92719 0.80809 0.71301 1.90615 1.67495 1.36317 1.45850 1.22589 0.84747 1.05044 1.05678 1.20884 0.84514 0.90273 1.01214 1.44269 1.00325 1.84955 1.01615 1.18674 1.03489 1.27656 0.90491 0.90090 1.25380 0.96611 0.97223 0.95969 1.69862 1.07413 1.39725 1.35720 0.87177 0.78285 0.84706 0.80713 1.20490 1.22918 1.19268 1.19692 0.93002 0.92045 0.86331 0.93449 1.22170 0.99537 1.02094 0.97707 1.20369 0.93203 0.96754 0.95844 1.21039 1.00295 0.91321 0.95015 1.20957 0.94318 0.98100 1.01501 1.20922 0.94710 0.96488 0.98814 1.17114 0.85645 0.94997 1.05941 1.23851 0.97011 0.83847 0.99537 1.76138 0.96564 1.25773 1.15620 1.78877 1.17191 0.93470 1.15662 1.47675 1.11057 1.06356 1.42902 0.67477 1.74907 0.93321 1.26901 1.20309 1.21026 0.94093 0.96483 0.97197 0.92260 0.88662 0.92147 0.88635 0.87306 0.91835 0.92487 0.92662 0.92080 0.91817 0.92357 0.85734 0.86010 0.85939 0.85621 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.37 10.56 101.05 1.07 1.43 16 2 O -0.37 -5.29 10.57 -39.23 -0.41 -5.71 16 3 C 0.46 7.46 7.96 36.01 0.29 7.75 16 4 O -0.51 -9.18 15.73 -18.75 -0.29 -9.48 16 5 C -0.14 -2.35 5.95 -27.88 -0.17 -2.52 16 6 C 0.16 2.87 4.29 -4.04 -0.02 2.85 16 7 N -0.59 -12.45 1.70 -166.98 -0.28 -12.74 16 8 C -0.28 -7.04 9.43 -15.06 -0.14 -7.18 16 9 H 0.08 2.28 8.06 -52.49 -0.42 1.86 16 10 C 0.05 1.38 5.33 -17.43 -0.09 1.28 16 11 N -0.89 -26.17 13.97 55.49 0.78 -25.40 16 12 Si 0.86 21.10 24.96 -169.99 -4.24 16.86 16 13 H -0.28 -6.70 6.45 56.52 0.36 -6.34 16 14 H -0.30 -7.68 7.11 56.52 0.40 -7.28 16 15 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 16 C 0.19 3.84 2.34 -69.08 -0.16 3.68 16 17 H 0.05 1.05 2.86 -51.93 -0.15 0.90 16 18 C -0.16 -2.46 7.93 37.16 0.29 -2.16 16 19 C -0.06 -1.16 4.46 -104.68 -0.47 -1.62 16 20 C -0.06 -1.02 9.12 -39.53 -0.36 -1.38 16 21 C -0.13 -2.05 10.03 -39.63 -0.40 -2.45 16 22 C -0.09 -1.43 9.70 -39.26 -0.38 -1.81 16 23 C -0.03 -0.61 5.88 -104.89 -0.62 -1.22 16 24 C 0.24 4.12 7.94 -156.30 -1.24 2.88 16 25 N -0.27 -4.83 12.23 32.16 0.39 -4.43 16 26 N -0.06 -0.83 13.47 60.35 0.81 -0.02 16 27 N -0.23 -2.69 7.90 60.35 0.48 -2.21 16 28 H 0.47 2.77 8.96 -340.36 -3.05 -0.28 16 29 N -0.30 -4.39 12.08 32.17 0.39 -4.00 16 30 C -0.07 -1.33 9.32 -39.26 -0.37 -1.69 16 31 H 0.06 0.60 8.13 -51.93 -0.42 0.18 16 32 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 33 H 0.06 0.64 8.13 -51.93 -0.42 0.21 16 34 H 0.10 1.53 6.40 -51.93 -0.33 1.19 16 35 H 0.11 1.94 8.14 -51.93 -0.42 1.52 16 36 H 0.06 1.22 8.00 -51.93 -0.42 0.81 16 37 H 0.06 0.95 5.91 -51.93 -0.31 0.64 16 38 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 39 H 0.06 0.90 5.79 -51.93 -0.30 0.60 16 40 H 0.06 0.91 6.87 -51.93 -0.36 0.56 16 41 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 42 H 0.12 2.12 7.91 -52.49 -0.41 1.70 16 43 H 0.12 1.56 8.06 -52.49 -0.42 1.13 16 44 H 0.12 1.71 7.88 -52.48 -0.41 1.30 16 45 H 0.13 2.60 7.44 -52.48 -0.39 2.21 16 LS Contribution 376.64 15.07 5.68 5.68 Total: -1.00 -32.85 376.64 -7.73 -40.58 By element: Atomic # 1 Polarization: 11.30 SS G_CDS: -8.26 Total: 3.04 kcal Atomic # 6 Polarization: 0.59 SS G_CDS: -2.76 Total: -2.17 kcal Atomic # 7 Polarization: -51.36 SS G_CDS: 2.56 Total: -48.80 kcal Atomic # 8 Polarization: -14.48 SS G_CDS: -0.71 Total: -15.19 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -4.24 Total: 16.86 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -32.85 -7.73 -40.58 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001604938493.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 135.446 kcal (2) G-P(sol) polarization free energy of solvation -32.846 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 102.600 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.735 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.581 kcal (6) G-S(sol) free energy of system = (1) + (5) 94.865 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds