Wall clock time and date at job start Wed Apr 1 2020 03:02:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45208 * 1 3 3 C 1.34218 * 116.99689 * 2 1 4 4 O 1.20825 * 120.00360 * 0.02562 * 3 2 1 5 5 C 1.50703 * 119.99856 * 180.02562 * 3 2 1 6 6 C 1.53003 * 109.47354 * 180.02562 * 5 3 2 7 7 N 1.46501 * 109.47196 * 179.97438 * 6 5 3 8 8 C 1.36936 * 120.00016 * 269.99868 * 7 6 5 9 9 H 1.07996 * 120.00178 * 322.37726 * 8 7 6 10 10 C 1.38809 * 119.99776 * 142.37319 * 8 7 6 11 11 N 1.31617 * 120.00010 * 156.98218 * 10 8 7 12 12 Si 1.86802 * 120.00075 * 336.97680 * 10 8 7 13 13 H 1.48507 * 109.46881 * 95.44384 * 12 10 8 14 14 H 1.48500 * 109.47453 * 215.44559 * 12 10 8 15 15 H 1.48497 * 109.47220 * 335.44785 * 12 10 8 16 16 C 1.46502 * 120.00009 * 90.00302 * 7 6 5 17 17 H 1.08996 * 109.46723 * 236.07233 * 16 7 6 18 18 C 1.53008 * 109.46927 * 356.06635 * 16 7 6 19 19 C 1.50694 * 109.47167 * 116.06338 * 16 7 6 20 20 C 1.38330 * 119.94731 * 313.70154 * 19 16 7 21 21 C 1.38295 * 120.24214 * 180.02562 * 20 19 16 22 22 C 1.38050 * 120.11428 * 0.02562 * 21 20 19 23 23 C 1.39280 * 119.87914 * 359.97232 * 22 21 20 24 24 C 1.48465 * 120.11402 * 179.97438 * 23 22 21 25 25 N 1.34046 * 126.67218 * 179.69320 * 24 23 22 26 26 N 1.28988 * 107.26645 * 179.83162 * 25 24 23 27 27 N 1.28730 * 108.94255 * 0.43416 * 26 25 24 28 28 H 0.97005 * 125.33850 * 179.72704 * 27 26 25 29 29 N 1.28864 * 109.31913 * 359.72166 * 27 26 25 30 30 C 1.38005 * 119.93712 * 133.71899 * 19 16 7 31 31 H 1.08994 * 109.46971 * 59.99679 * 1 2 3 32 32 H 1.09001 * 109.46611 * 179.97438 * 1 2 3 33 33 H 1.09002 * 109.46712 * 299.99418 * 1 2 3 34 34 H 1.09001 * 109.47113 * 60.00047 * 5 3 2 35 35 H 1.08997 * 109.47307 * 300.00101 * 5 3 2 36 36 H 1.09001 * 109.47056 * 59.99910 * 6 5 3 37 37 H 1.08997 * 109.46913 * 300.00240 * 6 5 3 38 38 H 0.97000 * 120.00298 * 180.02562 * 11 10 8 39 39 H 1.08999 * 109.46914 * 305.35436 * 18 16 7 40 40 H 1.08999 * 109.46955 * 65.35268 * 18 16 7 41 41 H 1.09000 * 109.46800 * 185.35744 * 18 16 7 42 42 H 1.08001 * 119.88134 * 0.04141 * 20 19 16 43 43 H 1.07994 * 119.94484 * 179.97438 * 21 20 19 44 44 H 1.08004 * 120.05764 * 179.70451 * 22 21 20 45 45 H 1.08003 * 120.06144 * 359.95770 * 30 19 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2748 -0.0006 6 6 4.0001 2.7421 0.0002 7 7 5.4631 2.8187 0.0002 8 6 6.1469 2.8540 1.1862 9 1 5.7460 3.4043 2.0245 10 6 7.3552 2.1823 1.3108 11 7 8.2226 2.5530 2.2287 12 14 7.7503 0.7522 0.1758 13 1 8.5561 1.2395 -0.9724 14 1 8.5222 -0.2736 0.9223 15 1 6.4868 0.1538 -0.3247 16 6 6.1947 2.8578 -1.2685 17 1 6.9167 2.0418 -1.2967 18 6 5.2098 2.7078 -2.4298 19 6 6.9185 4.1739 -1.3906 20 6 6.2592 5.3543 -1.0987 21 6 6.9175 6.5655 -1.2092 22 6 8.2372 6.6023 -1.6125 23 6 8.9059 5.4167 -1.9076 24 6 10.3251 5.4502 -2.3423 25 7 11.0926 4.3958 -2.6520 26 7 12.2536 4.8510 -2.9816 27 7 12.2430 6.1344 -2.8818 28 1 12.9948 6.7180 -3.0695 29 7 11.0771 6.5221 -2.4934 30 6 8.2381 4.1992 -1.7939 31 1 -0.3633 0.5139 -0.8899 32 1 -0.3632 -1.0277 -0.0005 33 1 -0.3633 0.5138 0.8901 34 1 3.9557 0.7809 -0.8908 35 1 3.9564 0.7806 0.8891 36 1 3.6108 3.2356 0.8907 37 1 3.6100 3.2367 -0.8893 38 1 9.0672 2.0839 2.3156 39 1 4.6192 1.8023 -2.2907 40 1 4.5473 3.5728 -2.4584 41 1 5.7614 2.6413 -3.3676 42 1 5.2266 5.3301 -0.7830 43 1 6.3980 7.4843 -0.9805 44 1 8.7490 7.5491 -1.7031 45 1 8.7522 3.2770 -2.0213 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001604938493.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:02:05 Heat of formation + Delta-G solvation = 74.060450 kcal Electronic energy + Delta-G solvation = -30300.087753 eV Core-core repulsion = 26128.223610 eV Total energy + Delta-G solvation = -4171.864143 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -45.47250 -41.42852 -40.52576 -38.37233 -37.38427 -35.44219 -34.68152 -34.12248 -33.48746 -31.62898 -31.22473 -30.10871 -28.60981 -26.26178 -25.79926 -25.44819 -24.87043 -23.01754 -22.83351 -21.72272 -20.93073 -20.16432 -19.03110 -18.45579 -18.15522 -17.74406 -17.46920 -17.36976 -17.12217 -16.46452 -16.02411 -15.68524 -15.44319 -15.21450 -14.84002 -14.61915 -14.42913 -14.32034 -14.20350 -13.69445 -13.52926 -13.40696 -13.36359 -13.08835 -12.90537 -12.82673 -12.68775 -12.58205 -12.42353 -12.27792 -12.20801 -12.02623 -11.78542 -11.74559 -11.64842 -11.56811 -11.42362 -11.39637 -10.51690 -9.64754 -9.43057 -8.77248 -8.13846 -5.52702 -0.21078 0.19445 0.56934 1.24698 1.35793 1.38323 1.42781 1.43952 1.51736 1.85259 2.47726 2.67180 2.91408 3.13539 3.18944 3.44816 3.96357 3.97941 4.08377 4.17451 4.21724 4.29306 4.34368 4.37040 4.38834 4.38993 4.42564 4.44124 4.60281 4.71472 4.73256 4.77356 4.90554 5.01281 5.08168 5.11014 5.17352 5.23629 5.37066 5.48739 5.52803 5.57585 5.65243 5.83967 6.00743 6.11134 6.27829 6.79949 7.02260 7.10181 7.68162 8.08368 9.05066 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.015957 B = 0.003111 C = 0.002882 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1754.268609 B = 8996.985083 C = 9712.967135 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.371 6.371 3 C 0.473 3.527 4 O -0.534 6.534 5 C -0.136 4.136 6 C 0.161 3.839 7 N -0.595 5.595 8 C -0.244 4.244 9 H 0.047 0.953 10 C 0.002 3.998 11 N -0.939 5.939 12 Si 0.910 3.090 13 H -0.280 1.280 14 H -0.319 1.319 15 H -0.242 1.242 16 C 0.189 3.811 17 H 0.025 0.975 18 C -0.151 4.151 19 C -0.076 4.076 20 C -0.070 4.070 21 C -0.121 4.121 22 C -0.086 4.086 23 C -0.042 4.042 24 C 0.217 3.783 25 N -0.307 5.307 26 N -0.058 5.058 27 N -0.198 5.198 28 H 0.495 0.505 29 N -0.291 5.291 30 C -0.091 4.091 31 H 0.065 0.935 32 H 0.129 0.871 33 H 0.059 0.941 34 H 0.109 0.891 35 H 0.096 0.904 36 H 0.048 0.952 37 H 0.079 0.921 38 H 0.257 0.743 39 H 0.070 0.930 40 H 0.077 0.923 41 H 0.074 0.926 42 H 0.130 0.870 43 H 0.157 0.843 44 H 0.148 0.852 45 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.491 4.716 -12.467 14.066 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.287 6.287 3 C 0.317 3.683 4 O -0.424 6.424 5 C -0.176 4.176 6 C 0.036 3.964 7 N -0.317 5.317 8 C -0.374 4.374 9 H 0.064 0.936 10 C -0.195 4.195 11 N -0.582 5.582 12 Si 0.740 3.260 13 H -0.207 1.207 14 H -0.249 1.249 15 H -0.166 1.166 16 C 0.084 3.916 17 H 0.042 0.958 18 C -0.208 4.208 19 C -0.078 4.078 20 C -0.089 4.089 21 C -0.139 4.139 22 C -0.106 4.106 23 C -0.046 4.046 24 C -0.062 4.062 25 N -0.179 5.179 26 N -0.053 5.053 27 N -0.049 5.049 28 H 0.355 0.645 29 N -0.144 5.144 30 C -0.112 4.112 31 H 0.083 0.917 32 H 0.147 0.853 33 H 0.078 0.922 34 H 0.127 0.873 35 H 0.115 0.885 36 H 0.067 0.933 37 H 0.098 0.902 38 H 0.066 0.934 39 H 0.089 0.911 40 H 0.096 0.904 41 H 0.093 0.907 42 H 0.148 0.852 43 H 0.175 0.825 44 H 0.166 0.834 45 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -3.995 4.698 -12.603 14.031 hybrid contribution 0.900 -0.559 0.286 1.097 sum -3.095 4.139 -12.318 13.358 Atomic orbital electron populations 1.23531 0.75043 1.05508 1.02534 1.86544 1.24999 1.33335 1.83830 1.24082 0.92258 0.81062 0.70890 1.90613 1.67832 1.37035 1.46907 1.22335 0.85852 1.03586 1.05806 1.20839 0.82522 0.91498 1.01579 1.44270 1.01385 1.85147 1.00871 1.18466 1.02774 1.25033 0.91085 0.93555 1.25801 0.96957 0.99370 0.97388 1.69986 1.08075 1.41450 1.38711 0.86380 0.78807 0.81928 0.78901 1.20715 1.24895 1.16559 1.19752 0.93471 0.91593 0.86794 0.95760 1.22136 0.98977 1.03182 0.96502 1.20392 0.93297 0.97256 0.96853 1.21181 1.00686 0.91571 0.95474 1.21346 0.94177 0.98739 0.99633 1.21228 0.94901 0.96712 0.97763 1.17311 0.86303 0.95170 1.05768 1.23821 0.97197 0.84401 1.00796 1.76125 0.97615 1.27012 1.17165 1.78806 1.16229 0.94455 1.15810 1.47743 1.11008 1.05965 1.40185 0.64548 1.74847 0.93773 1.25914 1.19821 1.20940 0.94545 0.96515 0.99199 0.91652 0.85286 0.92199 0.87257 0.88534 0.93345 0.90244 0.93439 0.91104 0.90376 0.90743 0.85240 0.82492 0.83448 0.87751 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.50 10.56 113.37 1.20 1.70 16 2 O -0.37 -9.83 10.57 -51.30 -0.54 -10.37 16 3 C 0.47 14.34 7.96 71.24 0.57 14.91 16 4 O -0.53 -18.11 15.73 21.97 0.35 -17.76 16 5 C -0.14 -4.34 5.95 29.85 0.18 -4.16 16 6 C 0.16 5.68 4.29 86.38 0.37 6.05 16 7 N -0.59 -24.93 1.70 -682.20 -1.16 -26.08 16 8 C -0.24 -12.79 9.43 84.03 0.79 -11.99 16 9 H 0.05 2.73 8.06 -2.91 -0.02 2.71 16 10 C 0.00 0.14 5.33 84.86 0.45 0.59 16 11 N -0.94 -57.84 13.97 21.65 0.30 -57.54 16 12 Si 0.91 44.89 24.96 68.60 1.71 46.60 16 13 H -0.28 -13.76 6.45 99.48 0.64 -13.12 16 14 H -0.32 -16.54 7.11 99.48 0.71 -15.83 16 15 H -0.24 -10.71 7.11 99.48 0.71 -10.00 16 16 C 0.19 7.33 2.34 44.25 0.10 7.43 16 17 H 0.03 1.09 2.86 -2.39 -0.01 1.08 16 18 C -0.15 -4.36 7.93 71.98 0.57 -3.79 16 19 C -0.08 -2.94 4.46 -19.90 -0.09 -3.03 16 20 C -0.07 -2.39 9.12 22.31 0.20 -2.19 16 21 C -0.12 -3.54 10.03 22.24 0.22 -3.32 16 22 C -0.09 -2.61 9.70 22.48 0.22 -2.39 16 23 C -0.04 -1.52 5.88 -20.04 -0.12 -1.64 16 24 C 0.22 7.46 7.94 137.38 1.09 8.55 16 25 N -0.31 -11.13 12.23 -52.18 -0.64 -11.77 16 26 N -0.06 -1.66 13.47 37.02 0.50 -1.16 16 27 N -0.20 -4.14 7.90 37.02 0.29 -3.85 16 28 H 0.50 4.47 8.96 -347.53 -3.12 1.36 16 29 N -0.29 -7.91 12.08 -52.13 -0.63 -8.54 16 30 C -0.09 -3.67 9.32 22.48 0.21 -3.46 16 31 H 0.06 1.15 8.13 -2.39 -0.02 1.13 16 32 H 0.13 1.51 8.14 -2.39 -0.02 1.50 16 33 H 0.06 1.13 8.13 -2.39 -0.02 1.11 16 34 H 0.11 3.21 6.40 -2.39 -0.02 3.19 16 35 H 0.10 3.36 8.14 -2.39 -0.02 3.34 16 36 H 0.05 1.85 8.00 -2.39 -0.02 1.83 16 37 H 0.08 2.47 5.91 -2.39 -0.01 2.45 16 38 H 0.26 15.43 8.31 -92.71 -0.77 14.66 16 39 H 0.07 1.89 5.79 -2.39 -0.01 1.88 16 40 H 0.08 2.02 6.87 -2.39 -0.02 2.01 16 41 H 0.07 1.92 8.14 -2.39 -0.02 1.90 16 42 H 0.13 4.21 7.91 -2.91 -0.02 4.19 16 43 H 0.16 3.43 8.06 -2.91 -0.02 3.41 16 44 H 0.15 3.68 7.88 -2.91 -0.02 3.66 16 45 H 0.10 4.55 7.44 -2.91 -0.02 4.53 16 Total: -1.00 -74.26 376.64 4.02 -70.24 By element: Atomic # 1 Polarization: 19.11 SS G_CDS: -2.13 Total: 16.98 kcal Atomic # 6 Polarization: -2.71 SS G_CDS: 5.97 Total: 3.26 kcal Atomic # 7 Polarization: -107.61 SS G_CDS: -1.33 Total: -108.95 kcal Atomic # 8 Polarization: -27.94 SS G_CDS: -0.20 Total: -28.14 kcal Atomic # 14 Polarization: 44.89 SS G_CDS: 1.71 Total: 46.60 kcal Total: -74.26 4.02 -70.24 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001604938493.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 144.299 kcal (2) G-P(sol) polarization free energy of solvation -74.263 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.036 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.024 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.238 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.060 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds