Wall clock time and date at job start Wed Apr 1 2020 03:17:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08993 * 109.47136 * 2 1 4 4 N 1.46499 * 109.47086 * 240.00207 * 2 1 3 5 5 C 1.34780 * 120.00246 * 85.00135 * 4 2 1 6 6 O 1.21592 * 119.99573 * 359.97438 * 5 4 2 7 7 N 1.34775 * 120.00138 * 179.97438 * 5 4 2 8 8 C 1.47429 * 125.64764 * 359.69652 * 7 5 4 9 9 C 1.55128 * 104.71896 * 155.81430 * 8 7 5 10 10 C 1.55154 * 101.48735 * 37.29348 * 9 8 7 11 11 O 1.42902 * 110.71792 * 82.69510 * 10 9 8 12 12 C 1.50703 * 110.87104 * 205.89386 * 10 9 8 13 13 H 1.08001 * 120.00067 * 355.06559 * 12 10 9 14 14 C 1.37878 * 119.99868 * 175.06296 * 12 10 9 15 15 N 1.31520 * 119.99969 * 0.02562 * 14 12 10 16 16 Si 1.86796 * 119.99831 * 180.02562 * 14 12 10 17 17 H 1.48492 * 109.47333 * 0.02562 * 16 14 12 18 18 H 1.48505 * 109.47311 * 120.00359 * 16 14 12 19 19 H 1.48505 * 109.47108 * 240.00098 * 16 14 12 20 20 C 1.47017 * 125.64565 * 179.97438 * 7 5 4 21 21 C 1.50698 * 109.46814 * 120.00437 * 2 1 3 22 22 N 1.30799 * 126.25250 * 75.00076 * 21 2 1 23 23 N 1.28675 * 110.29501 * 179.97438 * 22 21 2 24 24 C 1.32308 * 109.48562 * 359.97392 * 23 22 21 25 25 C 1.40815 * 133.46951 * 179.97438 * 24 23 22 26 26 C 1.36025 * 119.22400 * 180.02562 * 25 24 23 27 27 C 1.40539 * 119.74790 * 0.02562 * 26 25 24 28 28 C 1.34954 * 120.36843 * 359.97438 * 27 26 25 29 29 N 1.36063 * 126.24353 * 254.99674 * 21 2 1 30 30 H 1.08998 * 109.47427 * 299.99665 * 1 2 3 31 31 H 1.09000 * 109.46808 * 59.99900 * 1 2 3 32 32 H 1.09001 * 109.47301 * 179.97438 * 1 2 3 33 33 H 0.97000 * 120.00043 * 264.99976 * 4 2 1 34 34 H 1.09000 * 110.36161 * 274.74389 * 8 7 5 35 35 H 1.09000 * 110.36537 * 37.06757 * 8 7 5 36 36 H 1.09001 * 111.19083 * 279.18509 * 9 8 7 37 37 H 1.09003 * 110.90280 * 155.27836 * 9 8 7 38 38 H 0.96700 * 113.99733 * 185.02085 * 11 10 9 39 39 H 0.96995 * 119.99479 * 179.97438 * 15 14 12 40 40 H 1.09000 * 109.88612 * 300.43996 * 20 7 5 41 41 H 1.08997 * 109.88155 * 61.45392 * 20 7 5 42 42 H 1.07996 * 120.38429 * 0.31257 * 25 24 23 43 43 H 1.08005 * 120.12127 * 179.97438 * 26 25 24 44 44 H 1.08003 * 119.81727 * 179.97438 * 27 26 25 45 45 H 1.08003 * 119.74400 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0183 -0.6906 -1.1962 5 6 2.1471 -0.0182 -2.3572 6 8 1.8575 1.1615 -2.4118 7 7 2.5968 -0.6534 -3.4575 8 6 2.9882 -2.0729 -3.5305 9 6 2.8173 -2.4525 -5.0249 10 6 3.2882 -1.1529 -5.7296 11 8 4.7132 -1.1214 -5.8322 12 6 2.6546 -1.0203 -7.0905 13 1 2.0371 -1.8168 -7.4787 14 6 2.8631 0.1180 -7.8400 15 7 3.6154 1.0878 -7.3675 16 14 2.0772 0.2827 -9.5266 17 1 1.2838 -0.9367 -9.8242 18 1 1.1847 1.4696 -9.5431 19 1 3.1377 0.4467 -10.5531 20 6 2.7838 -0.0440 -4.7823 21 6 2.0323 -0.7105 1.2304 22 7 2.0327 -2.0030 1.4312 23 7 2.5318 -2.2751 2.5856 24 6 2.8820 -1.1520 3.1909 25 6 3.4628 -0.8658 4.4414 26 6 3.7051 0.4290 4.7804 27 6 3.3737 1.4585 3.8829 28 6 2.8175 1.1691 2.6879 29 7 2.5682 -0.1245 2.3353 30 1 -0.3634 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3634 -1.0277 -0.0005 33 1 2.2490 -1.6317 -1.1527 34 1 4.0261 -2.1966 -3.2215 35 1 2.3311 -2.6800 -2.9078 36 1 1.7751 -2.6688 -5.2598 37 1 3.4581 -3.2940 -5.2881 38 1 5.0632 -0.2963 -6.1954 39 1 3.7624 1.8884 -7.8950 40 1 1.8353 0.3512 -5.1459 41 1 3.5200 0.7574 -4.7211 42 1 3.7172 -1.6654 5.1213 43 1 4.1497 0.6650 5.7360 44 1 3.5652 2.4871 4.1511 45 1 2.5665 1.9683 2.0061 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001649840903.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:17:07 Heat of formation + Delta-G solvation = 40.695306 kcal Electronic energy + Delta-G solvation = -30167.093829 eV Core-core repulsion = 25993.782865 eV Total energy + Delta-G solvation = -4173.310964 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 1.48 seconds Orbital eigenvalues (eV) -43.88352 -39.81311 -38.57360 -37.61937 -35.67857 -34.28138 -34.10001 -32.21622 -31.61434 -31.04344 -29.67800 -28.96812 -27.70821 -25.25314 -24.64145 -24.31051 -23.58112 -22.69226 -21.12623 -19.69511 -19.57628 -18.46324 -17.83077 -17.31044 -17.04112 -16.88985 -16.33685 -15.92803 -15.48263 -15.17790 -14.91688 -14.84810 -14.26214 -13.99034 -13.67191 -13.06639 -13.06417 -12.92004 -12.89208 -12.77755 -12.60033 -12.24106 -12.12094 -11.89960 -11.67058 -11.61785 -11.54254 -11.42275 -11.05496 -10.83163 -10.76511 -10.64677 -10.45837 -10.16533 -9.95449 -9.70326 -9.30897 -9.06359 -8.67634 -8.45962 -8.30562 -7.80346 -6.27514 -4.35664 0.19984 0.68548 1.84257 2.33127 2.93649 3.06178 3.21559 3.30056 3.33771 3.55639 3.67554 3.95820 4.04264 4.26418 4.31607 4.36275 4.45878 4.52521 4.85498 5.00253 5.00755 5.08855 5.28882 5.40741 5.43256 5.49938 5.62475 5.64982 5.70044 5.74686 5.81173 5.89900 6.04809 6.08838 6.11571 6.44640 6.52378 6.58517 6.73856 6.89403 6.96027 7.24368 7.32275 7.59468 7.74317 8.04690 8.22403 8.45849 8.68304 9.02625 9.30560 9.39254 10.80353 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.022905 B = 0.002350 C = 0.002305 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1222.146824 B =11912.501924 C =12147.100286 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.261 3.739 3 H 0.102 0.898 4 N -0.741 5.741 5 C 0.720 3.280 6 O -0.597 6.597 7 N -0.626 5.626 8 C 0.101 3.899 9 C -0.115 4.115 10 C 0.247 3.753 11 O -0.585 6.585 12 C -0.535 4.535 13 H 0.067 0.933 14 C 0.070 3.930 15 N -0.894 5.894 16 Si 0.903 3.097 17 H -0.271 1.271 18 H -0.282 1.282 19 H -0.282 1.282 20 C 0.123 3.877 21 C 0.139 3.861 22 N -0.236 5.236 23 N -0.286 5.286 24 C 0.191 3.809 25 C -0.079 4.079 26 C -0.087 4.087 27 C -0.137 4.137 28 C 0.068 3.932 29 N -0.384 5.384 30 H 0.062 0.938 31 H 0.081 0.919 32 H 0.068 0.932 33 H 0.403 0.597 34 H 0.062 0.938 35 H 0.059 0.941 36 H 0.078 0.922 37 H 0.076 0.924 38 H 0.382 0.618 39 H 0.269 0.731 40 H 0.065 0.935 41 H 0.063 0.937 42 H 0.158 0.842 43 H 0.148 0.852 44 H 0.158 0.842 45 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.085 0.840 23.591 23.631 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.152 3.848 3 H 0.119 0.881 4 N -0.400 5.400 5 C 0.422 3.578 6 O -0.477 6.477 7 N -0.363 5.363 8 C -0.022 4.022 9 C -0.153 4.153 10 C 0.207 3.793 11 O -0.393 6.393 12 C -0.573 4.573 13 H 0.085 0.915 14 C -0.133 4.133 15 N -0.533 5.533 16 Si 0.731 3.269 17 H -0.196 1.196 18 H -0.208 1.208 19 H -0.208 1.208 20 C 0.001 3.999 21 C -0.124 4.124 22 N -0.076 5.076 23 N -0.132 5.132 24 C -0.057 4.057 25 C -0.100 4.100 26 C -0.112 4.112 27 C -0.159 4.159 28 C -0.055 4.055 29 N -0.064 5.064 30 H 0.081 0.919 31 H 0.100 0.900 32 H 0.087 0.913 33 H 0.239 0.761 34 H 0.081 0.919 35 H 0.077 0.923 36 H 0.096 0.904 37 H 0.094 0.906 38 H 0.232 0.768 39 H 0.079 0.921 40 H 0.084 0.916 41 H 0.082 0.918 42 H 0.175 0.825 43 H 0.166 0.834 44 H 0.175 0.825 45 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges -1.589 -0.269 23.386 23.442 hybrid contribution 0.037 1.715 -0.768 1.879 sum -1.552 1.446 22.619 22.718 Atomic orbital electron populations 1.22209 0.92859 1.03518 1.03100 1.18692 0.94366 0.94725 0.77039 0.88060 1.45065 1.72995 1.14102 1.07844 1.15399 0.78586 0.84437 0.79398 1.90879 1.58269 1.14202 1.84301 1.47956 1.66749 1.11551 1.10011 1.22330 0.99104 0.81868 0.98949 1.22759 1.01375 0.99177 0.91992 1.19528 0.79553 0.88348 0.91909 1.86114 1.22235 1.43884 1.87104 1.21530 1.31371 1.03333 1.01113 0.91459 1.25078 0.94426 0.95190 0.98643 1.69711 1.37982 1.07442 1.38134 0.86350 0.79119 0.78208 0.83236 1.19587 1.20798 1.20777 1.22895 1.01447 0.97673 0.77858 1.24942 1.05197 0.90592 0.91644 1.74169 1.13867 1.09994 1.09557 1.74998 1.16864 1.19809 1.01554 1.22406 1.03673 0.84718 0.94939 1.20306 0.99172 0.98315 0.92255 1.21219 0.98089 0.91594 1.00282 1.20981 1.00655 1.01539 0.92714 1.21805 1.00486 0.84366 0.98800 1.43645 1.40059 1.08043 1.14617 0.91922 0.90033 0.91263 0.76147 0.91939 0.92288 0.90365 0.90555 0.76801 0.92096 0.91621 0.91836 0.82483 0.83383 0.82477 0.81028 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.87 9.47 37.16 0.35 -1.52 16 2 C 0.26 3.46 3.05 -69.08 -0.21 3.25 16 3 H 0.10 1.33 7.14 -51.93 -0.37 0.96 16 4 N -0.74 -11.69 5.03 -59.81 -0.30 -11.99 16 5 C 0.72 14.34 8.45 -86.92 -0.73 13.60 16 6 O -0.60 -13.63 16.33 5.29 0.09 -13.55 16 7 N -0.63 -13.01 3.32 -176.10 -0.59 -13.60 16 8 C 0.10 1.82 6.58 -2.41 -0.02 1.80 16 9 C -0.12 -2.31 6.24 -24.47 -0.15 -2.46 16 10 C 0.25 5.96 0.85 -89.94 -0.08 5.89 16 11 O -0.58 -14.67 13.07 -35.23 -0.46 -15.14 16 12 C -0.54 -13.95 8.13 -34.44 -0.28 -14.23 16 13 H 0.07 1.73 7.78 -52.49 -0.41 1.32 16 14 C 0.07 1.82 5.28 -17.82 -0.09 1.72 16 15 N -0.89 -23.73 10.96 55.43 0.61 -23.13 16 16 Si 0.90 20.46 29.54 -169.99 -5.02 15.43 16 17 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 18 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 19 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 20 C 0.12 2.98 5.23 -3.07 -0.02 2.97 16 21 C 0.14 1.83 6.93 -154.23 -1.07 0.76 16 22 N -0.24 -3.54 11.89 32.94 0.39 -3.15 16 23 N -0.29 -4.20 12.31 31.14 0.38 -3.81 16 24 C 0.19 2.24 7.92 -156.05 -1.24 1.00 16 25 C -0.08 -0.59 10.11 -39.40 -0.40 -0.99 16 26 C -0.09 -0.43 10.07 -39.51 -0.40 -0.83 16 27 C -0.14 -0.68 9.98 -39.88 -0.40 -1.08 16 28 C 0.07 0.51 10.80 -16.69 -0.18 0.33 16 29 N -0.38 -4.26 2.95 -59.73 -0.18 -4.43 16 30 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.08 1.09 8.14 -51.93 -0.42 0.66 16 32 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 33 H 0.40 6.06 6.83 -40.82 -0.28 5.78 16 34 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 35 H 0.06 0.89 7.29 -51.93 -0.38 0.51 16 36 H 0.08 1.51 8.05 -51.93 -0.42 1.09 16 37 H 0.08 1.45 8.14 -51.93 -0.42 1.03 16 38 H 0.38 9.80 7.45 45.56 0.34 10.13 16 39 H 0.27 6.85 8.31 -40.82 -0.34 6.51 16 40 H 0.07 1.73 7.82 -51.93 -0.41 1.33 16 41 H 0.06 1.68 7.92 -51.93 -0.41 1.27 16 42 H 0.16 0.83 8.06 -52.49 -0.42 0.40 16 43 H 0.15 0.25 8.06 -52.48 -0.42 -0.18 16 44 H 0.16 0.28 8.06 -52.48 -0.42 -0.14 16 45 H 0.17 0.92 7.76 -52.48 -0.41 0.51 16 LS Contribution 377.04 15.07 5.68 5.68 Total: -1.00 -33.05 377.04 -9.56 -42.61 By element: Atomic # 1 Polarization: 20.10 SS G_CDS: -5.26 Total: 14.84 kcal Atomic # 6 Polarization: 15.13 SS G_CDS: -4.91 Total: 10.22 kcal Atomic # 7 Polarization: -60.43 SS G_CDS: 0.32 Total: -60.11 kcal Atomic # 8 Polarization: -28.31 SS G_CDS: -0.37 Total: -28.68 kcal Atomic # 14 Polarization: 20.46 SS G_CDS: -5.02 Total: 15.43 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -33.05 -9.56 -42.61 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001649840903.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.307 kcal (2) G-P(sol) polarization free energy of solvation -33.055 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.252 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.557 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.611 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.695 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.48 seconds