Wall clock time and date at job start Wed Apr 1 2020 03:17:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08993 * 109.47136 * 2 1 4 4 N 1.46499 * 109.47086 * 240.00207 * 2 1 3 5 5 C 1.34780 * 120.00246 * 85.00135 * 4 2 1 6 6 O 1.21592 * 119.99573 * 359.97438 * 5 4 2 7 7 N 1.34775 * 120.00138 * 179.97438 * 5 4 2 8 8 C 1.47429 * 125.64764 * 359.69652 * 7 5 4 9 9 C 1.55128 * 104.71896 * 155.81430 * 8 7 5 10 10 C 1.55154 * 101.48735 * 37.29348 * 9 8 7 11 11 O 1.42902 * 110.71792 * 82.69510 * 10 9 8 12 12 C 1.50703 * 110.87104 * 205.89386 * 10 9 8 13 13 H 1.08001 * 120.00067 * 355.06559 * 12 10 9 14 14 C 1.37878 * 119.99868 * 175.06296 * 12 10 9 15 15 N 1.31520 * 119.99969 * 0.02562 * 14 12 10 16 16 Si 1.86796 * 119.99831 * 180.02562 * 14 12 10 17 17 H 1.48492 * 109.47333 * 0.02562 * 16 14 12 18 18 H 1.48505 * 109.47311 * 120.00359 * 16 14 12 19 19 H 1.48505 * 109.47108 * 240.00098 * 16 14 12 20 20 C 1.47017 * 125.64565 * 179.97438 * 7 5 4 21 21 C 1.50698 * 109.46814 * 120.00437 * 2 1 3 22 22 N 1.30799 * 126.25250 * 75.00076 * 21 2 1 23 23 N 1.28675 * 110.29501 * 179.97438 * 22 21 2 24 24 C 1.32308 * 109.48562 * 359.97392 * 23 22 21 25 25 C 1.40815 * 133.46951 * 179.97438 * 24 23 22 26 26 C 1.36025 * 119.22400 * 180.02562 * 25 24 23 27 27 C 1.40539 * 119.74790 * 0.02562 * 26 25 24 28 28 C 1.34954 * 120.36843 * 359.97438 * 27 26 25 29 29 N 1.36063 * 126.24353 * 254.99674 * 21 2 1 30 30 H 1.08998 * 109.47427 * 299.99665 * 1 2 3 31 31 H 1.09000 * 109.46808 * 59.99900 * 1 2 3 32 32 H 1.09001 * 109.47301 * 179.97438 * 1 2 3 33 33 H 0.97000 * 120.00043 * 264.99976 * 4 2 1 34 34 H 1.09000 * 110.36161 * 274.74389 * 8 7 5 35 35 H 1.09000 * 110.36537 * 37.06757 * 8 7 5 36 36 H 1.09001 * 111.19083 * 279.18509 * 9 8 7 37 37 H 1.09003 * 110.90280 * 155.27836 * 9 8 7 38 38 H 0.96700 * 113.99733 * 185.02085 * 11 10 9 39 39 H 0.96995 * 119.99479 * 179.97438 * 15 14 12 40 40 H 1.09000 * 109.88612 * 300.43996 * 20 7 5 41 41 H 1.08997 * 109.88155 * 61.45392 * 20 7 5 42 42 H 1.07996 * 120.38429 * 0.31257 * 25 24 23 43 43 H 1.08005 * 120.12127 * 179.97438 * 26 25 24 44 44 H 1.08003 * 119.81727 * 179.97438 * 27 26 25 45 45 H 1.08003 * 119.74400 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0183 -0.6906 -1.1962 5 6 2.1471 -0.0182 -2.3572 6 8 1.8575 1.1615 -2.4118 7 7 2.5968 -0.6534 -3.4575 8 6 2.9882 -2.0729 -3.5305 9 6 2.8173 -2.4525 -5.0249 10 6 3.2882 -1.1529 -5.7296 11 8 4.7132 -1.1214 -5.8322 12 6 2.6546 -1.0203 -7.0905 13 1 2.0371 -1.8168 -7.4787 14 6 2.8631 0.1180 -7.8400 15 7 3.6154 1.0878 -7.3675 16 14 2.0772 0.2827 -9.5266 17 1 1.2838 -0.9367 -9.8242 18 1 1.1847 1.4696 -9.5431 19 1 3.1377 0.4467 -10.5531 20 6 2.7838 -0.0440 -4.7823 21 6 2.0323 -0.7105 1.2304 22 7 2.0327 -2.0030 1.4312 23 7 2.5318 -2.2751 2.5856 24 6 2.8820 -1.1520 3.1909 25 6 3.4628 -0.8658 4.4414 26 6 3.7051 0.4290 4.7804 27 6 3.3737 1.4585 3.8829 28 6 2.8175 1.1691 2.6879 29 7 2.5682 -0.1245 2.3353 30 1 -0.3634 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3634 -1.0277 -0.0005 33 1 2.2490 -1.6317 -1.1527 34 1 4.0261 -2.1966 -3.2215 35 1 2.3311 -2.6800 -2.9078 36 1 1.7751 -2.6688 -5.2598 37 1 3.4581 -3.2940 -5.2881 38 1 5.0632 -0.2963 -6.1954 39 1 3.7624 1.8884 -7.8950 40 1 1.8353 0.3512 -5.1459 41 1 3.5200 0.7574 -4.7211 42 1 3.7172 -1.6654 5.1213 43 1 4.1497 0.6650 5.7360 44 1 3.5652 2.4871 4.1511 45 1 2.5665 1.9683 2.0061 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001649840903.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:17:06 Heat of formation + Delta-G solvation = 17.760046 kcal Electronic energy + Delta-G solvation = -30168.088377 eV Core-core repulsion = 25993.782865 eV Total energy + Delta-G solvation = -4174.305512 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -44.69236 -41.39311 -39.39979 -39.14622 -36.95699 -36.09658 -34.89069 -34.22721 -32.67103 -32.03817 -31.14187 -29.85496 -29.49764 -27.02919 -25.46280 -25.25552 -24.33211 -24.22956 -22.14639 -21.42762 -21.06636 -19.58670 -19.09412 -18.79814 -18.17430 -17.73741 -17.45324 -17.13120 -16.75771 -16.67148 -16.25183 -15.94140 -15.76518 -15.19564 -15.06591 -14.78240 -14.70622 -14.29390 -13.87147 -13.61201 -13.52853 -13.50494 -13.39431 -13.28019 -13.09064 -12.86734 -12.71455 -12.55622 -12.48366 -12.35343 -12.25168 -12.20364 -12.09720 -11.69581 -11.39277 -11.17863 -10.67617 -10.65605 -10.45932 -10.29351 -9.49687 -9.16290 -8.25832 -6.41223 -0.34408 -0.01260 1.02631 1.40393 1.43604 1.44635 1.54911 1.72911 2.03896 2.34017 2.38557 2.77750 2.93769 3.00869 3.24399 3.45256 3.60438 3.78050 3.82703 3.96120 4.03178 4.06114 4.10952 4.15802 4.33839 4.46270 4.55624 4.63232 4.68063 4.70954 4.72333 4.89905 4.99857 5.03822 5.09315 5.11269 5.14704 5.19455 5.29812 5.34533 5.41381 5.48208 5.74655 5.79227 5.97363 6.10550 6.65312 6.92554 7.27901 7.33303 7.35577 7.44090 8.80658 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.022905 B = 0.002350 C = 0.002305 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1222.146824 B =11912.501924 C =12147.100286 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.263 3.737 3 H 0.102 0.898 4 N -0.726 5.726 5 C 0.720 3.280 6 O -0.631 6.631 7 N -0.633 5.633 8 C 0.106 3.894 9 C -0.109 4.109 10 C 0.233 3.767 11 O -0.587 6.587 12 C -0.555 4.555 13 H 0.067 0.933 14 C 0.026 3.974 15 N -0.915 5.915 16 Si 0.963 3.037 17 H -0.266 1.266 18 H -0.283 1.283 19 H -0.278 1.278 20 C 0.143 3.857 21 C 0.124 3.876 22 N -0.263 5.263 23 N -0.336 5.336 24 C 0.187 3.813 25 C -0.105 4.105 26 C -0.059 4.059 27 C -0.117 4.117 28 C 0.036 3.964 29 N -0.384 5.384 30 H 0.086 0.914 31 H 0.064 0.936 32 H 0.066 0.934 33 H 0.408 0.592 34 H 0.067 0.933 35 H 0.095 0.905 36 H 0.085 0.915 37 H 0.089 0.911 38 H 0.375 0.625 39 H 0.270 0.730 40 H 0.035 0.965 41 H 0.031 0.969 42 H 0.175 0.825 43 H 0.193 0.807 44 H 0.199 0.801 45 H 0.188 0.812 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.848 1.300 26.120 26.166 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.155 3.845 3 H 0.120 0.880 4 N -0.383 5.383 5 C 0.422 3.578 6 O -0.512 6.512 7 N -0.369 5.369 8 C -0.016 4.016 9 C -0.147 4.147 10 C 0.193 3.807 11 O -0.395 6.395 12 C -0.593 4.593 13 H 0.085 0.915 14 C -0.175 4.175 15 N -0.554 5.554 16 Si 0.789 3.211 17 H -0.190 1.190 18 H -0.209 1.209 19 H -0.203 1.203 20 C 0.020 3.980 21 C -0.140 4.140 22 N -0.103 5.103 23 N -0.182 5.182 24 C -0.062 4.062 25 C -0.126 4.126 26 C -0.083 4.083 27 C -0.137 4.137 28 C -0.086 4.086 29 N -0.063 5.063 30 H 0.105 0.895 31 H 0.083 0.917 32 H 0.085 0.915 33 H 0.245 0.755 34 H 0.085 0.915 35 H 0.113 0.887 36 H 0.104 0.896 37 H 0.107 0.893 38 H 0.224 0.776 39 H 0.079 0.921 40 H 0.053 0.947 41 H 0.050 0.950 42 H 0.192 0.808 43 H 0.210 0.790 44 H 0.216 0.784 45 H 0.205 0.795 Dipole moment (debyes) X Y Z Total from point charges -1.355 0.152 25.966 26.002 hybrid contribution 0.044 1.714 -1.339 2.175 sum -1.310 1.867 24.627 24.733 Atomic orbital electron populations 1.22119 0.91834 1.03438 1.03411 1.18771 0.95090 0.94411 0.76212 0.88042 1.44947 1.71909 1.14168 1.07317 1.15489 0.78219 0.84097 0.80040 1.90847 1.59630 1.15792 1.84978 1.47889 1.67236 1.12586 1.09207 1.22426 1.00265 0.80564 0.98349 1.22753 1.01869 0.97505 0.92595 1.19725 0.78892 0.90443 0.91679 1.86106 1.22958 1.43446 1.87020 1.21830 1.31716 1.03529 1.02233 0.91499 1.25809 0.94889 0.94953 1.01871 1.69812 1.38702 1.07699 1.39161 0.85419 0.78274 0.78080 0.79333 1.18978 1.20898 1.20348 1.22377 0.98689 0.97089 0.79892 1.24584 1.06811 0.90397 0.92252 1.74017 1.14777 1.11150 1.10350 1.74866 1.19524 1.21686 1.02161 1.22997 1.02964 0.84204 0.96008 1.20727 1.00313 1.00375 0.91211 1.21822 0.94922 0.90175 1.01386 1.21617 0.97435 1.03624 0.91047 1.22452 1.02111 0.83356 1.00675 1.43715 1.39589 1.09197 1.13827 0.89540 0.91652 0.91507 0.75535 0.91488 0.88720 0.89615 0.89256 0.77560 0.92087 0.94699 0.95015 0.80755 0.79002 0.78365 0.79524 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.53 9.47 71.98 0.68 -2.84 16 2 C 0.26 7.00 3.05 44.24 0.13 7.14 16 3 H 0.10 2.68 7.14 -2.39 -0.02 2.66 16 4 N -0.73 -22.96 5.03 -461.41 -2.32 -25.28 16 5 C 0.72 29.15 8.45 179.05 1.51 30.66 16 6 O -0.63 -29.63 16.33 -4.00 -0.07 -29.70 16 7 N -0.63 -26.68 3.32 -829.31 -2.76 -29.43 16 8 C 0.11 3.73 6.58 86.93 0.57 4.30 16 9 C -0.11 -4.30 6.24 32.06 0.20 -4.10 16 10 C 0.23 11.42 0.85 -10.35 -0.01 11.41 16 11 O -0.59 -30.04 13.07 -148.98 -1.95 -31.99 16 12 C -0.55 -29.31 8.13 25.60 0.21 -29.10 16 13 H 0.07 3.45 7.78 -2.91 -0.02 3.43 16 14 C 0.03 1.36 5.28 84.65 0.45 1.80 16 15 N -0.91 -49.86 10.96 21.45 0.24 -49.62 16 16 Si 0.96 42.30 29.54 68.60 2.03 44.32 16 17 H -0.27 -11.32 7.11 99.48 0.71 -10.61 16 18 H -0.28 -12.39 7.11 99.48 0.71 -11.68 16 19 H -0.28 -11.94 7.11 99.48 0.71 -11.24 16 20 C 0.14 7.20 5.23 86.73 0.45 7.65 16 21 C 0.12 3.25 6.93 137.71 0.95 4.20 16 22 N -0.26 -8.06 11.89 -49.69 -0.59 -8.65 16 23 N -0.34 -10.05 12.31 -55.39 -0.68 -10.73 16 24 C 0.19 4.24 7.92 134.06 1.06 5.30 16 25 C -0.11 -1.31 10.11 22.39 0.23 -1.08 16 26 C -0.06 -0.30 10.07 22.32 0.22 -0.08 16 27 C -0.12 -0.63 9.98 22.08 0.22 -0.41 16 28 C 0.04 0.45 10.80 83.23 0.90 1.34 16 29 N -0.38 -8.16 2.95 -342.88 -1.01 -9.18 16 30 H 0.09 1.61 8.14 -2.39 -0.02 1.59 16 31 H 0.06 1.76 8.14 -2.39 -0.02 1.74 16 32 H 0.07 1.61 8.14 -2.39 -0.02 1.59 16 33 H 0.41 12.16 6.83 -92.71 -0.63 11.53 16 34 H 0.07 2.32 8.14 -2.39 -0.02 2.30 16 35 H 0.09 2.67 7.29 -2.39 -0.02 2.66 16 36 H 0.09 3.22 8.05 -2.39 -0.02 3.20 16 37 H 0.09 3.27 8.14 -2.39 -0.02 3.25 16 38 H 0.38 19.93 7.45 -74.06 -0.55 19.38 16 39 H 0.27 14.04 8.31 -92.71 -0.77 13.27 16 40 H 0.03 1.93 7.82 -2.39 -0.02 1.91 16 41 H 0.03 1.76 7.92 -2.39 -0.02 1.74 16 42 H 0.18 1.43 8.06 -2.91 -0.02 1.41 16 43 H 0.19 -0.63 8.06 -2.91 -0.02 -0.66 16 44 H 0.20 -0.53 8.06 -2.91 -0.02 -0.55 16 45 H 0.19 1.61 7.76 -2.91 -0.02 1.59 16 Total: -1.00 -76.07 377.04 0.54 -75.54 By element: Atomic # 1 Polarization: 38.65 SS G_CDS: -0.14 Total: 38.51 kcal Atomic # 6 Polarization: 28.42 SS G_CDS: 7.79 Total: 36.20 kcal Atomic # 7 Polarization: -125.77 SS G_CDS: -7.13 Total: -132.90 kcal Atomic # 8 Polarization: -59.67 SS G_CDS: -2.01 Total: -61.68 kcal Atomic # 14 Polarization: 42.30 SS G_CDS: 2.03 Total: 44.32 kcal Total: -76.07 0.54 -75.54 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001649840903.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.298 kcal (2) G-P(sol) polarization free energy of solvation -76.073 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.225 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.535 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.538 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.760 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds