Wall clock time and date at job start Wed Apr 1 2020 04:49:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08999 * 109.47554 * 2 1 4 4 C 1.53010 * 109.47027 * 119.99518 * 2 1 3 5 5 N 1.46506 * 109.46877 * 174.99969 * 4 2 1 6 6 C 1.34772 * 119.99555 * 180.02562 * 5 4 2 7 7 O 1.21589 * 120.00108 * 0.02562 * 6 5 4 8 8 C 1.47585 * 119.99929 * 179.97438 * 6 5 4 9 9 C 1.40084 * 120.35574 * 359.97372 * 8 6 5 10 10 N 1.31167 * 121.11938 * 180.02562 * 9 8 6 11 11 C 1.33367 * 121.67447 * 0.02562 * 10 9 8 12 12 C 1.41845 * 133.16684 * 179.97438 * 11 10 9 13 13 C 1.34452 * 107.96006 * 180.02562 * 12 11 10 14 14 N 1.36545 * 109.71370 * 0.02562 * 13 12 11 15 15 H 0.97003 * 125.59715 * 180.02562 * 14 13 12 16 16 C 1.37852 * 108.80200 * 0.02562 * 14 13 12 17 17 C 1.38731 * 133.56557 * 179.97438 * 16 14 13 18 18 N 1.46896 * 109.47529 * 239.99687 * 2 1 3 19 19 C 1.46897 * 111.00194 * 84.99707 * 18 2 1 20 20 C 1.50693 * 109.47481 * 180.02562 * 19 18 2 21 21 O 1.21301 * 119.99874 * 0.02562 * 20 19 18 22 22 N 1.34783 * 120.00340 * 180.02562 * 20 19 18 23 23 C 1.37094 * 119.99949 * 179.97438 * 22 20 19 24 24 H 1.07999 * 120.00375 * 359.97438 * 23 22 20 25 25 C 1.38952 * 119.99778 * 179.97438 * 23 22 20 26 26 N 1.31410 * 119.99972 * 179.97438 * 25 23 22 27 27 Si 1.86797 * 119.99927 * 0.02562 * 25 23 22 28 28 H 1.48502 * 109.47349 * 89.99975 * 27 25 23 29 29 H 1.48505 * 109.47309 * 209.99501 * 27 25 23 30 30 H 1.48500 * 109.47144 * 329.99842 * 27 25 23 31 31 H 1.09001 * 109.47245 * 180.02562 * 1 2 3 32 32 H 1.09006 * 109.47154 * 300.00627 * 1 2 3 33 33 H 1.09002 * 109.47221 * 60.00247 * 1 2 3 34 34 H 1.08992 * 109.46738 * 55.00312 * 4 2 1 35 35 H 1.08995 * 109.47238 * 295.00056 * 4 2 1 36 36 H 0.96999 * 120.00277 * 0.02562 * 5 4 2 37 37 H 1.07996 * 119.44152 * 0.05205 * 9 8 6 38 38 H 1.08001 * 126.02266 * 0.04472 * 12 11 10 39 39 H 1.08002 * 125.14431 * 180.26568 * 13 12 11 40 40 H 1.07998 * 120.91264 * 0.04370 * 17 16 14 41 41 H 1.00905 * 110.99608 * 321.04744 * 18 2 1 42 42 H 1.09003 * 109.47269 * 300.00606 * 19 18 2 43 43 H 1.09002 * 109.46769 * 60.00175 * 19 18 2 44 44 H 0.96999 * 119.99954 * 0.02562 * 22 20 19 45 45 H 0.97004 * 120.00193 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7212 1.2494 5 7 3.5001 -0.8263 1.1907 6 6 4.1730 -1.4290 2.1908 7 8 3.5682 -1.8859 3.1416 8 6 5.6438 -1.5355 2.1315 9 6 6.3479 -1.0132 1.0389 10 7 7.6549 -1.0999 0.9706 11 6 8.3690 -1.6863 1.9322 12 6 9.7581 -1.9131 2.1081 13 6 9.9283 -2.5592 3.2749 14 7 8.7159 -2.7651 3.8684 15 1 8.5716 -3.2099 4.7183 16 6 7.7308 -2.2371 3.0615 17 6 6.3493 -2.1625 3.1635 18 7 2.0197 -0.6925 -1.1993 19 6 2.0825 0.2224 -2.3468 20 6 2.5874 -0.5220 -3.5559 21 8 2.8671 -1.6992 -3.4702 22 7 2.7284 0.1202 -4.7325 23 6 3.1882 -0.5569 -5.8322 24 1 3.4380 -1.6048 -5.7557 25 6 3.3330 0.1051 -7.0453 26 7 3.7743 -0.5439 -8.0994 27 14 2.9017 1.9177 -7.1774 28 1 4.1025 2.7360 -6.8711 29 1 2.4374 2.2170 -8.5559 30 1 1.8223 2.2415 -6.2103 31 1 -0.3634 -1.0277 0.0005 32 1 -0.3634 0.5140 0.8900 33 1 -0.3634 0.5138 -0.8900 34 1 1.6054 -1.7197 1.2953 35 1 1.7516 -0.1582 2.1370 36 1 3.9825 -0.4622 0.4320 37 1 5.8054 -0.5305 0.2395 38 1 10.5413 -1.6185 1.4252 39 1 10.8802 -2.8652 3.6831 40 1 5.8330 -2.5745 4.0180 41 1 1.4496 -1.4980 -1.4099 42 1 1.0871 0.6162 -2.5525 43 1 2.7589 1.0461 -2.1182 44 1 2.5051 1.0617 -4.8009 45 1 3.8757 -0.0817 -8.9462 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001662256917.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:49:50 Heat of formation + Delta-G solvation = 8.122439 kcal Electronic energy + Delta-G solvation = -28819.952347 eV Core-core repulsion = 24645.228917 eV Total energy + Delta-G solvation = -4174.723430 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.99687 -39.88586 -38.63161 -37.76160 -36.97222 -34.24264 -33.82036 -33.11117 -31.69796 -31.03841 -30.41327 -29.75239 -26.71128 -26.32661 -23.98371 -23.77150 -23.48222 -21.18423 -21.08589 -20.56620 -19.41640 -18.70357 -18.39374 -17.50047 -16.89394 -16.31325 -16.10555 -15.85917 -15.44586 -15.20866 -15.09847 -14.86668 -14.53252 -14.40479 -13.93778 -13.60857 -13.53332 -13.26020 -13.15880 -13.03903 -12.84480 -12.70326 -12.64180 -12.47015 -12.39691 -12.14402 -11.78064 -11.57271 -11.16724 -11.07085 -10.59931 -10.58348 -10.32124 -9.97434 -9.57294 -9.44604 -9.08960 -8.72396 -8.63698 -8.40692 -8.24140 -8.17267 -6.30758 -3.82288 0.37218 1.08649 2.17540 2.56959 2.94870 3.01881 3.06980 3.15273 3.17255 3.72707 3.82210 3.98710 4.04030 4.10573 4.38857 4.60662 4.65768 4.71694 4.74821 4.82778 4.92984 4.93528 5.07222 5.12162 5.22029 5.36127 5.42134 5.51906 5.57647 5.63488 5.67297 5.76274 5.82331 5.87145 5.90915 5.98775 6.07506 6.13951 6.40683 6.59782 6.99583 6.99873 7.47958 7.52232 7.57884 7.83497 8.14677 8.17360 8.59406 8.95305 9.42410 9.82116 10.82352 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.009914 B = 0.002507 C = 0.002082 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2823.648076 B =11165.374903 C =13442.154536 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.067 3.933 3 H 0.085 0.915 4 C 0.135 3.865 5 N -0.704 5.704 6 C 0.567 3.433 7 O -0.550 6.550 8 C -0.176 4.176 9 C 0.139 3.861 10 N -0.451 5.451 11 C 0.115 3.885 12 C -0.197 4.197 13 C 0.078 3.922 14 N -0.582 5.582 15 H 0.421 0.579 16 C 0.022 3.978 17 C -0.014 4.014 18 N -0.664 5.664 19 C 0.046 3.954 20 C 0.448 3.552 21 O -0.563 6.563 22 N -0.590 5.590 23 C -0.305 4.305 24 H 0.120 0.880 25 C 0.041 3.959 26 N -0.881 5.881 27 Si 0.880 3.120 28 H -0.270 1.270 29 H -0.277 1.277 30 H -0.270 1.270 31 H 0.062 0.938 32 H 0.063 0.937 33 H 0.062 0.938 34 H 0.069 0.931 35 H 0.071 0.929 36 H 0.410 0.590 37 H 0.164 0.836 38 H 0.155 0.845 39 H 0.181 0.819 40 H 0.144 0.856 41 H 0.356 0.644 42 H 0.046 0.954 43 H 0.088 0.912 44 H 0.370 0.630 45 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.689 2.676 25.400 25.968 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C -0.044 4.044 3 H 0.104 0.896 4 C 0.010 3.990 5 N -0.356 5.356 6 C 0.354 3.646 7 O -0.430 6.430 8 C -0.183 4.183 9 C -0.032 4.032 10 N -0.159 5.159 11 C -0.016 4.016 12 C -0.223 4.223 13 C -0.053 4.053 14 N -0.185 5.185 15 H 0.259 0.741 16 C -0.087 4.087 17 C -0.043 4.043 18 N -0.297 5.297 19 C -0.086 4.086 20 C 0.234 3.766 21 O -0.445 6.445 22 N -0.229 5.229 23 C -0.433 4.433 24 H 0.137 0.863 25 C -0.162 4.162 26 N -0.521 5.521 27 Si 0.706 3.294 28 H -0.195 1.195 29 H -0.202 1.202 30 H -0.196 1.196 31 H 0.081 0.919 32 H 0.082 0.918 33 H 0.081 0.919 34 H 0.087 0.913 35 H 0.089 0.911 36 H 0.247 0.753 37 H 0.181 0.819 38 H 0.173 0.827 39 H 0.198 0.802 40 H 0.161 0.839 41 H 0.176 0.824 42 H 0.064 0.936 43 H 0.106 0.894 44 H 0.203 0.797 45 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 5.669 1.895 25.445 26.138 hybrid contribution -1.545 1.154 0.078 1.930 sum 4.124 3.049 25.523 26.033 Atomic orbital electron populations 1.22434 0.96121 1.02849 1.02631 1.21873 0.93479 0.98363 0.90672 0.89644 1.21363 0.79725 1.01168 0.96731 1.45687 1.07903 1.58808 1.23154 1.17842 0.86284 0.77994 0.82524 1.90755 1.69775 1.48653 1.33795 1.20594 0.94274 1.05669 0.97745 1.22870 0.89321 0.95351 0.95653 1.67231 1.07399 1.14902 1.26351 1.19236 0.94647 0.97565 0.90169 1.20634 0.94033 1.08231 0.99396 1.22063 0.89089 0.99963 0.94200 1.41731 1.05028 1.50893 1.20835 0.74067 1.19006 0.90971 1.03730 0.94990 1.20492 0.89572 0.95721 0.98547 1.60176 1.57881 1.09202 1.02468 1.21762 1.00142 0.95769 0.90966 1.19697 0.84884 0.88282 0.83770 1.90586 1.53762 1.15938 1.84218 1.42206 1.60062 1.11086 1.09576 1.19427 1.40119 0.98025 0.85773 0.86275 1.25045 0.97480 0.98390 0.95260 1.69622 1.45038 1.36546 1.00862 0.86671 0.78991 0.85198 0.78494 1.19547 1.20238 1.19573 0.91860 0.91781 0.91946 0.91252 0.91127 0.75272 0.81900 0.82723 0.80188 0.83851 0.82396 0.93564 0.89407 0.79725 0.91607 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.54 9.16 37.16 0.34 -1.20 16 2 C 0.07 0.66 2.75 -67.71 -0.19 0.47 16 3 H 0.09 0.76 7.80 -51.93 -0.40 0.35 16 4 C 0.13 1.43 5.37 -4.03 -0.02 1.41 16 5 N -0.70 -8.28 5.34 -61.33 -0.33 -8.61 16 6 C 0.57 7.62 7.77 -12.45 -0.10 7.53 16 7 O -0.55 -8.76 16.40 5.29 0.09 -8.68 16 8 C -0.18 -2.23 5.89 -104.79 -0.62 -2.85 16 9 C 0.14 1.80 10.69 -17.14 -0.18 1.62 16 10 N -0.45 -6.49 10.40 -10.71 -0.11 -6.60 16 11 C 0.11 1.45 7.32 -84.80 -0.62 0.83 16 12 C -0.20 -1.87 10.84 -39.54 -0.43 -2.30 16 13 C 0.08 0.48 11.82 -16.79 -0.20 0.28 16 14 N -0.58 -3.99 6.14 -10.66 -0.07 -4.05 16 15 H 0.42 1.48 8.96 -40.82 -0.37 1.12 16 16 C 0.02 0.24 7.27 -83.96 -0.61 -0.37 16 17 C -0.01 -0.16 9.72 -38.79 -0.38 -0.54 16 18 N -0.66 -8.91 5.32 -108.00 -0.57 -9.48 16 19 C 0.05 0.68 5.96 -4.98 -0.03 0.65 16 20 C 0.45 9.67 7.82 -10.99 -0.09 9.59 16 21 O -0.56 -14.62 15.78 5.54 0.09 -14.54 16 22 N -0.59 -13.63 5.09 -10.96 -0.06 -13.69 16 23 C -0.30 -8.51 10.16 -14.93 -0.15 -8.67 16 24 H 0.12 3.83 7.39 -52.49 -0.39 3.44 16 25 C 0.04 1.12 5.50 -17.47 -0.10 1.03 16 26 N -0.88 -25.66 13.96 55.50 0.77 -24.88 16 27 Si 0.88 19.13 27.74 -169.99 -4.71 14.42 16 28 H -0.27 -5.77 7.11 56.52 0.40 -5.37 16 29 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 30 H -0.27 -5.31 6.52 56.52 0.37 -4.94 16 31 H 0.06 0.55 8.13 -51.93 -0.42 0.13 16 32 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 33 H 0.06 0.55 7.45 -51.93 -0.39 0.16 16 34 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 35 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 36 H 0.41 4.62 6.17 -40.82 -0.25 4.37 16 37 H 0.16 1.86 6.38 -52.49 -0.34 1.53 16 38 H 0.16 1.25 8.06 -52.49 -0.42 0.83 16 39 H 0.18 0.33 8.06 -52.49 -0.42 -0.09 16 40 H 0.14 1.45 7.72 -52.49 -0.41 1.05 16 41 H 0.36 5.22 8.17 -39.29 -0.32 4.90 16 42 H 0.05 0.60 7.44 -51.93 -0.39 0.21 16 43 H 0.09 1.12 8.06 -51.93 -0.42 0.70 16 44 H 0.37 7.47 5.76 -40.82 -0.24 7.24 16 45 H 0.27 7.35 8.31 -40.82 -0.34 7.01 16 LS Contribution 383.21 15.07 5.77 5.77 Total: -1.00 -37.10 383.21 -8.09 -45.19 By element: Atomic # 1 Polarization: 23.27 SS G_CDS: -5.60 Total: 17.66 kcal Atomic # 6 Polarization: 10.84 SS G_CDS: -3.36 Total: 7.48 kcal Atomic # 7 Polarization: -66.95 SS G_CDS: -0.36 Total: -67.31 kcal Atomic # 8 Polarization: -23.39 SS G_CDS: 0.17 Total: -23.21 kcal Atomic # 14 Polarization: 19.13 SS G_CDS: -4.71 Total: 14.42 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -37.10 -8.09 -45.19 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001662256917.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.309 kcal (2) G-P(sol) polarization free energy of solvation -37.096 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.213 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.091 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.186 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.122 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds